Clinical Genomics Resource Incubator
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Clinical Genomics Resource Incubator, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/cg-incubator/ and changes regularly. See the Directory of published versions

: somaticVCFfile

Page standards status: Informative

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<DocumentReference xmlns="http://hl7.org/fhir">
  <id value="somaticVCFfile"/>
  <language value="en"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"><p class="res-header-id"><b>Generated Narrative: DocumentReference somaticVCFfile</b></p><a name="somaticVCFfile"> </a><a name="hcsomaticVCFfile"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Language: en</p></div><p><b>identifier</b>: <code>http://example.org/identifiers/files</code>/1134121</p><p><b>status</b>: Current</p><p><b>docStatus</b>: Preliminary</p><p><b>description</b>: </p><div><p>VCF file containing somatic variants identified from tumor/normal paired DNA sequencing</p>
</div><p><b>securityLabel</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/v3-Confidentiality R}">Restricted</span></p><blockquote><p><b>content</b></p><h3>Attachments</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ContentType</b></td><td><b>Url</b></td><td><b>Title</b></td></tr><tr><td style="display: none">*</td><td>text/plain</td><td><a href="http://example.org/files/somatic-dna-variants.vcf">http://example.org/files/somatic-dna-variants.vcf</a></td><td>somatic-dna-variants.vcf</td></tr></table></blockquote></div>
  </text>
  <identifier>
    <system value="http://example.org/identifiers/files"/>
    <value value="1134121"/>
  </identifier>
  <status value="current"/>
  <docStatus value="preliminary"/>
  <description
               value="VCF file containing somatic variants identified from tumor/normal paired DNA sequencing"/>
  <securityLabel>
    <coding>
      <system
              value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
      <code value="R"/>
      <display value="Restricted"/>
    </coding>
  </securityLabel>
  <content>
    <attachment>
      <contentType value="text/plain"/>
      <url value="http://example.org/files/somatic-dna-variants.vcf"/>
      <title value="somatic-dna-variants.vcf"/>
    </attachment>
  </content>
</DocumentReference>