INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/bulk-data --branch master repo DEBUG:root:Time to deadline 35879.996861 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.27812 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.258327 seconds /usr/local/bin/sushi -> /usr/local/lib/node_modules/fsh-sushi/dist/app.js npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@2.3.2 (node_modules/fsh-sushi/node_modules/fsevents): npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for fsevents@2.3.2: wanted {"os":"darwin","arch":"any"} (current: {"os":"linux","arch":"x64"}) + fsh-sushi@2.1.1 added 901 packages from 558 contributors in 15.818s DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -auto-ig-build -tx http://tx.fhir.org/r4 -target https://build.fhir.org/ig/HL7/bulk-data/ -out /scratch/ig-build-temp-USGJAU/repo DEBUG:root:Time to deadline 35861.883824 seconds FHIR IG Publisher Version 1.1.84 (Git# b6e78bd0369b). Built 2021-10-29T23:38:50.831Z (10 days old) Detected Java version: 11.0.9 from /usr/local/openjdk-11 on Linux/amd64 (64bit). 18366MB available dir = /scratch/ig-build-temp-USGJAU/repo, path = /usr/local/rvm/bin:/usr/local/rvm/rubies/ruby-2.5.1/bin:/usr/local/openjdk-11/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -auto-ig-build -tx http://tx.fhir.org/r4 -target https://build.fhir.org/ig/HL7/bulk-data/ -out /scratch/ig-build-temp-USGJAU/repo Start Clock @ Tuesday, November 9, 2021 at 8:35:17 PM Coordinated Universal Time (2021-11-09T20:35:17Z) API keys loaded from /etc/ig.builder.keyfile.ini (00:00.0007) Package Cache: var/lib/.fhir/packages (00:00.0010) Load Template from #smart-template (00:00.0796) Load Template from hl7.fhir.template#current (00:00.0820) Installing hl7.fhir.template#current to the package cache Fetching: Installing: done. Load Template from hl7.base.template#current (00:01.0549) Installing hl7.base.template#current to the package cache Fetching: Installing: done. Load Template from fhir.base.template#current (00:01.0574) Installing fhir.base.template#current to the package cache Fetching:. Installing: . done. Pre-Process: /scratch/ig-build-temp-USGJAU/repo/input/includes = _includes | null Pre-Process: /scratch/ig-build-temp-USGJAU/repo/input/pagecontent = _includes | /scratch/ig-build-temp-USGJAU/repo/template/scripts/processPages.xslt onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/template/onLoad-ig-working.xml to /scratch/ig-build-temp-USGJAU/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/ig-build-temp-USGJAU/repo (00:04.0725) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching:.................................................................................................... Installing: .................................................................................................... done. Terminology Cache is at /scratch/ig-build-temp-USGJAU/repo/input-cache/txcache. Trimming now (00:21.0193) Connect to Terminology Server at http://tx.fhir.org/r4 (00:21.0197) Installing hl7.fhir.pubpack#0.0.9 to the package cache Fetching:......... Installing: ......... done. Load Package hl7.fhir.pubpack#0.0.9 Installing hl7.fhir.xver-extensions#0.0.5 to the package cache Fetching: Installing: done. Load Package hl7.fhir.xver-extensions#0.0.5 Installing hl7.terminology.r4#2.1.0 to the package cache Fetching:............................................................................ Installing: ............................................................................ done. Load Package hl7.terminology.r4#2.1.0 Initialization complete (00:31.0767) Fetch http://hl7.org/fhir/uv/bulkdata/package-list.json for version check (00:31.0769) Load Content (00:31.0838) loadPrePages from FetchedFile[/scratch/ig-build-temp-USGJAU/repo/input/includes] as /scratch/ig-build-temp-USGJAU/repo/input/includes find pre-page /scratch/ig-build-temp-USGJAU/repo/input/includes/menu.xml at /scratch/ig-build-temp-USGJAU/repo/input/includes/menu.xml from /scratch/ig-build-temp-USGJAU/repo/input/includes loadPrePages from FetchedFile[/scratch/ig-build-temp-USGJAU/repo/input/pagecontent] as /scratch/ig-build-temp-USGJAU/repo/input/pagecontent find pre-page /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/downloads.xml at /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/downloads.xml from /scratch/ig-build-temp-USGJAU/repo/input/pagecontent find pre-page /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/export.md at /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/export.md from /scratch/ig-build-temp-USGJAU/repo/input/pagecontent find pre-page /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/changes.md at /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/changes.md from /scratch/ig-build-temp-USGJAU/repo/input/pagecontent find pre-page /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/abbreviations.md at /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/abbreviations.md from /scratch/ig-build-temp-USGJAU/repo/input/pagecontent find pre-page /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/authorization.md at /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/authorization.md from /scratch/ig-build-temp-USGJAU/repo/input/pagecontent find pre-page /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/index.md at /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/index.md from /scratch/ig-build-temp-USGJAU/repo/input/pagecontent find pre-page /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/operations.md at /scratch/ig-build-temp-USGJAU/repo/input/pagecontent/operations.md from /scratch/ig-build-temp-USGJAU/repo/input/pagecontent Processing Conformance Resources (00:31.0971) Generating Snapshots (00:32.0077) Generating Narratives (00:32.0077) Validating Conformance Resources (00:35.0561) Installing hl7.fhir.uv.bulkdata#1.1.0 to the package cache Fetching: Installing: done. Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching:.................................................................................................... Installing: .................................................................................................... done. -tx: Connect to http://tx.fhir.org/r4 Version Comparison: compare 1.1.0 to current for http://hl7.org/fhir/uv/bulkdata/CodeSystem/include-associated-data Version Comparison: compare 1.1.0 to current for http://hl7.org/fhir/uv/bulkdata/ValueSet/include-associated-data Version Comparison: compare 1.1.0 to current for http://hl7.org/fhir/uv/bulkdata/ImplementationGuide/hl7.fhir.uv.bulkdata Version Comparison: compare 1.1.0 to current for http://hl7.org/fhir/uv/bulkdata/OperationDefinition/export Version Comparison: compare 1.1.0 to current for http://hl7.org/fhir/uv/bulkdata/OperationDefinition/patient-export Version Comparison: compare 1.1.0 to current for http://hl7.org/fhir/uv/bulkdata/OperationDefinition/group-export Version Comparison: compare 1.1.0 to current for http://hl7.org/fhir/uv/bulkdata/CapabilityStatement/bulk-data Validating Resources (00:44.0081) Processing Provenance Records (00:44.0081) Generating Outputs in /scratch/ig-build-temp-USGJAU/repo/output (00:44.0082) onGenerate.checkVersions: [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-USGJAU/repo/template/versions.txt [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/onGenerate.getVersions.xslt onGenerate.r5-schemas: [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/ig-build-temp-USGJAU/repo/input-cache/schemas/R5/fhir-single.xsd [get] Not modified - so not downloaded [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-USGJAU/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Not modified - so not downloaded [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/ig-build-temp-USGJAU/repo/input-cache/schemas/R5/xml.xsd [get] Not modified - so not downloaded [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-USGJAU/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd [get] Not modified - so not downloaded onGenerate.r4-schemas: [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/ig-build-temp-USGJAU/repo/input-cache/schemas/R4/fhir-single.xsd [get] Not modified - so not downloaded [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-USGJAU/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Not modified - so not downloaded [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/ig-build-temp-USGJAU/repo/input-cache/schemas/R4/xml.xsd [get] Not modified - so not downloaded [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-USGJAU/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd [get] Not modified - so not downloaded onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-USGJAU/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-USGJAU/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 13 files to /scratch/ig-build-temp-USGJAU/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-USGJAU/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/template/onGenerate-ig-working.1.xml to /scratch/ig-build-temp-USGJAU/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-USGJAU/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-USGJAU/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.jira.setup: [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-USGJAU/repo/template/properties.txt [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/onGenerate.genProperties.xslt [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml [get] To: /scratch/ig-build-temp-USGJAU/repo/input-cache/workgroups.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/_workgroups.xml [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-bulkdata.xml [get] To: /scratch/ig-build-temp-USGJAU/repo/input-cache/jiraspec.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-bulkdata.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/FHIR-bulkdata.xml onGenerate.jira.generate: [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/template/package-list.tmp.xml to /scratch/ig-build-temp-USGJAU/repo/template/package-list.xml [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/onGenerate.package-list.xslt [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/template/jira.tmp.xml to /scratch/ig-build-temp-USGJAU/repo/template/jira.xml [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/onGenerate.jira.xslt [xslt] : Warning! The source document is in no namespace, but the template rules all expect elements in a namespace [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/template/jira.xml to /scratch/ig-build-temp-USGJAU/repo/template/jira-new.xml [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/onGenerate.normalize.xslt [xslt] Processing /scratch/ig-build-temp-USGJAU/repo/input-cache/jiraspec.xml to /scratch/ig-build-temp-USGJAU/repo/template/jira-current.xml [xslt] Loading stylesheet /scratch/ig-build-temp-USGJAU/repo/template/scripts/onGenerate.normalize.xslt onGenerate.jira.check: onGenerate.jira.skip-offline: onGenerate.jira.skip-missing: onGenerate.jira: onGenerate.extend: onGenerate: Generating Summary Outputs (00:51.0625) Sending Usage Stats to Server (00:52.0028) ## Memory (MB): Use = 703, Free = 17663, Total = 18366, Max =18366 Reclaiming memory... ## Memory (MB): Use = 468, Free = 17898, Total = 18366, Max =18366 Jekyll: Source: /scratch/ig-build-temp-USGJAU/repo/temp/pages (00:53.0422) Jekyll: Generating... (00:53.0422) Jekyll: done in 0.785 seconds. (00:54.0209) Checking Output HTML (00:54.0417) found 553 files (00:54.0423) .......................................... .......................................... ... 553 html files, 0 pages invalid xhtml (0%) (00:54.0899) ... 2975 links, 0 broken links (0%) (00:54.0899) Build final .zip (00:54.0900) Final .zip built (00:55.0757) Finished. Times: loading: 00:00.0131, generate: 00:23.0997, narrative generation: 00:03.0483, realm-rules: 00:00.0000, previous-version: 00:07.0869, jekyll: 00:01.0387, validation: 00:00.0639 (#7), template: 00:03.0734 (#3) (00:55.0974) context [anonymous] 3:46 attribute id isn't defined context [anonymous] 3:85 attribute id isn't defined context [anonymous] 3:167 attribute id isn't defined context [anonymous] 3:175 attribute vsumm isn't defined context [anonymous] 4:58 attribute id isn't defined context [anonymous] 4:64 attribute signposts isn't defined context [anonymous] 3:46 attribute id isn't defined context [anonymous] 3:85 attribute id isn't defined context [anonymous] 3:167 attribute id isn't defined context [anonymous] 3:175 attribute vsumm isn't defined context [anonymous] 4:58 attribute id isn't defined context [anonymous] 4:64 attribute signposts isn't defined Validation output in /scratch/ig-build-temp-USGJAU/repo/output/qa.html Errors: 0, Warnings: 0, Info: 0, Broken Links = 0 (00:56.0097) Done (00:56.0098)