INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/UTG --branch UP-675-Retire-of-EvidenceVariableRole-ValueSet-and-CodeSystem-from-THO repo DEBUG:root:Time to deadline 35879.99794 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35863.512163 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35862.492553 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 6s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/UTG/ -out /scratch/repo DEBUG:root:Time to deadline 35856.390955 seconds FHIR IG Publisher Version 2.0.22 (Git# 6bbdf7dc5537). Built 2025-10-22T10:27:38.176Z (5 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/UTG/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, October 28, 2025, 6:37:09 AM Coordinated Universal Time (2025-10-28T06:37:09Z) Build FHIR IG from /scratch/repo (00:00.025 / 00:00.026, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.028, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.031, 97Mb) Root directory: /scratch/repo (00:00.006 / 00:00.037, 97Mb) Load Template from hl7.utg.template#current (00:00.851 / 00:00.889, 37Mb) Installing hl7.utg.template#current to the package cache  Fetching:  Installing hl7.utg.template#current  done.  Load Template from hl7.base.template#current (00:01.647 / 00:02.536, 117Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir2.base.template#current (00:00.181 / 00:02.718, 117Mb) Installing fhir2.base.template#current to the package cache  Fetching:  Installing fhir2.base.template#current  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:05.836 / 00:08.555, 145Mb) Core Package hl7.fhir.r5.core#5.0.0 (00:00.006 / 00:08.561, 145Mb) Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Running Terminology Log: /tmp/ohfu-fhir-ig-11277418776783656091.html Connect to Terminology Server at http://tx.fhir.org (00:12.499 / 00:21.061, 485Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.fhir.uv.extensions.r5#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r5#5.2.0  done. Load Package hl7.fhir.uv.extensions.r5#5.2.0 Installing hl7.fhir.uv.tools.r5#0.8.0 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r5#0.8.0  done. Load Package hl7.fhir.uv.tools.r5#0.8.0 Initialization complete (00:06.850 / 00:27.911, 991Mb) Load IG (00:00.000 / 00:27.911, 991Mb) Load Translations (00:00.000 / 00:27.912, 991Mb) Load Content (00:00.000 / 00:27.912, 991Mb) Using en as the default narrative language. (Implementation Guide param i18n-default-lang) (00:00.081 / 00:27.994, 999Mb) Process Loaded Resources (01:03.472 / 01:31.466, 2Gb) Generating Snapshots (00:06.258 / 01:37.725, 2Gb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://terminology.hl7.org/package-list.json for version check (00:00.375 / 01:38.101, 2Gb) Processing Conformance Resources (00:02.598 / 01:40.700, 3Gb) Checking Language (00:00.000 / 01:40.700, 3Gb) Load Dependency Info (00:00.080 / 01:40.781, 3Gb) Load Info (00:00.013 / 01:40.794, 3Gb) Load Paths (00:00.007 / 01:40.802, 3Gb) Check R4 / R4B (00:00.002 / 01:40.805, 3Gb) Installing hl7.fhir.r3.core#3.0.2 to the package cache  Fetching:  Installing hl7.fhir.r3.core#3.0.2  done. Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Assign Comparison Ids (00:56.525 / 02:37.330, 3Gb) Propagating status (00:00.003 / 02:37.333, 3Gb) Generating Narratives (00:00.000 / 02:37.333, 3Gb) Validating Conformance Resources (00:53.947 / 03:31.281, 3Gb) Installing hl7.fhir.r4b.core#4.3.0 to the package cache  Fetching:  Installing hl7.fhir.r4b.core#4.3.0  done. Check profiles & code systems (02:17.109 / 05:48.391, 4Gb) Check realm rules (00:00.024 / 05:48.415, 4Gb) Previous Version Comparison (00:00.007 / 05:48.422, 4Gb) Installing hl7.terminology#6.5.0 to the package cache  Fetching:  Installing hl7.terminology#6.5.0  done. Checking for Bundles to sign (00:53.503 / 06:41.926, 10Gb) Validating Resources (00:00.007 / 06:41.933, 10Gb) Processing Provenance Records (02:08.172 / 08:50.106, 5Gb) Generating Translation artifacts (00:13.587 / 09:03.694, 9Gb) Generating Outputs in /scratch/repo/output (00:00.007 / 09:03.701, 9Gb) Generate Native Outputs (00:05.270 / 09:08.971, 7Gb) Run Template (09:08.217 / 18:17.189, 5Gb) [To redirect Truffle log output to a file use one of the following options: * '--log.file=' if the option is passed using a guest language launcher. * '-Dpolyglot.log.file=' if the option is passed using the host Java launcher. * Configure logging using the polyglot embedding API.] [engine] WARNING: The polyglot context is using an implementation that does not support runtime compilation. The guest application code will therefore be executed in interpreted mode only. Execution only in interpreted mode will strongly impact the guest application performance. For more information on using GraalVM see https://www.graalvm.org/java/quickstart/. To disable this warning the '--engine.WarnInterpreterOnly=false' option or use the '-Dpolyglot.engine.WarnInterpreterOnly=false' system property. Generate HTML Outputs (00:38.381 / 18:55.570, 5Gb) Generate Spreadsheets (15:23.720 / 34:19.291, 7Gb) Generate Summaries (00:00.825 / 34:20.117, 7Gb) Generating Summary Outputs (en) (00:00.000 / 34:20.117, 7Gb) Table of contents has a section with more than 222 entries. Collapsing will not work reliably DB Cumulative Time invested: 00:14:29.310 Sending Usage Stats to Server (03:38.475 / 37:58.593, 7Gb) ## Memory (MB): Use = 8028, Free = 10979, Total = 19008, Max = 19008 (00:00.021 / 37:58.614, 7Gb) Reclaiming memory... (00:00.000 / 37:58.614, 7Gb) ## Memory (MB): Use = 4901, Free = 14106, Total = 19008, Max = 19008 (00:12.198 / 38:10.812, 4Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.005 / 38:10.818, 4Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.008 / 38:10.826, 4Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 38:10.826, 4Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 38:10.826, 4Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.556 / 38:11.383, 4Gb) Jekyll: Generating... (00:00.000 / 38:11.383, 4Gb) Sending usage stats failed: Connection timed out Jekyll has failed. Complete output from running Jekyll:  Liquid Exception: Could not locate the included file 'list-simple-name-codesystems.xhtml' in any of ["/scratch/repo/temp/pages/_includes"]. Ensure it exists in one of those directories and, if it is a symlink, does not point outside your site source (03:10.775 / 41:22.159, 4Gb) Note: Check that Jekyll is installed correctly (00:00.000 / 41:22.159, 4Gb) Publishing Content Failed: Process exited with an error: 1 (Exit value: 1) (00:00.472 / 41:22.632, 5Gb) (00:00.000 / 41:22.632, 5Gb) Use -? to get command line help (00:00.000 / 41:22.632, 5Gb) (00:00.000 / 41:22.632, 5Gb) Stack Dump (for debugging): (00:00.000 / 41:22.632, 5Gb) org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.PublisherGenerator.runJekyll(PublisherGenerator.java:3707) at org.hl7.fhir.igtools.publisher.PublisherGenerator.runTool(PublisherGenerator.java:3594) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:361) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:396) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:218) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1487)