INFO:root:about to clone!
DEBUG:root:running: git clone --recursive https://github.com/HL7-cz/mhd --branch master repo
DEBUG:root:Time to deadline 35879.997818 seconds
Cloning into 'repo'...
DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar
DEBUG:root:Time to deadline 35879.631009 seconds
DEBUG:root:running: npm -g install fsh-sushi
DEBUG:root:Time to deadline 35878.361101 seconds
npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported
npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful.
npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported

added 140 packages in 6s

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  run `npm fund` for details
npm notice 
npm notice New major version of npm available! 9.8.1 -> 11.6.0
npm notice Changelog: <https://github.com/npm/cli/releases/tag/v11.6.0>
npm notice Run `npm install -g npm@11.6.0` to update!
npm notice 
DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7-cz/mhd/ -out /scratch/repo
DEBUG:root:Time to deadline 35872.51513 seconds
FHIR IG Publisher Version 2.0.17 (Git# 98facbadd305). Built 2025-09-09T06:53:45.198Z (3 days old)   
Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available   
dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7-cz/mhd/ -out /scratch/repo
Character encoding = UTF-8 / UTF-8                                                                  
Start Clock @ Friday, September 12, 2025, 7:15:23 AM Coordinated Universal Time (2025-09-12T07:15:23Z)
                                                                                                    
Build FHIR IG from /scratch/repo                                                                     (00:00.030 / 00:00.031, 97Mb)
API keys loaded from /etc/fhir-settings.json                                                         (00:00.003 / 00:00.034, 97Mb)
Package Cache: /var/lib/.fhir/packages                                                               (00:00.003 / 00:00.037, 97Mb)
Root directory: /scratch/repo                                                                        (00:00.006 / 00:00.043, 97Mb)
Unable to load IG as an r5 IG - try R4 (/scratch/repo/fsh-generated/resources/ImplementationGuide-hl7.fhir.cz.empty.json) (00:00.002 / 00:00.045, 97Mb)
Publishing Content Failed: Error Parsing File /scratch/repo/fsh-generated/resources/ImplementationGuide-hl7.fhir.cz.empty.json: /scratch/repo/fsh-generated/resources/ImplementationGuide-hl7.fhir.cz.empty.json (00:00.059 / 00:00.105, 101Mb)
                                                                                                     (00:00.000 / 00:00.105, 101Mb)
Use -? to get command line help                                                                      (00:00.000 / 00:00.105, 101Mb)
                                                                                                     (00:00.000 / 00:00.105, 101Mb)
Stack Dump (for debugging):                                                                          (00:00.000 / 00:00.106, 101Mb)
java.lang.Exception: Error Parsing File /scratch/repo/fsh-generated/resources/ImplementationGuide-hl7.fhir.cz.empty.json: /scratch/repo/fsh-generated/resources/ImplementationGuide-hl7.fhir.cz.empty.json
	at org.hl7.fhir.igtools.publisher.PublisherIGLoader.initializeFromIg(PublisherIGLoader.java:257)
	at org.hl7.fhir.igtools.publisher.PublisherIGLoader.initialize(PublisherIGLoader.java:138)
	at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:208)
	at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1482)
Caused by: java.nio.file.NoSuchFileException: /scratch/repo/fsh-generated/resources/ImplementationGuide-hl7.fhir.cz.empty.json
	at java.base/sun.nio.fs.UnixException.translateToIOException(UnixException.java:92)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:106)
	at java.base/sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:111)
	at java.base/sun.nio.fs.UnixFileSystemProvider.newByteChannel(UnixFileSystemProvider.java:261)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:379)
	at java.base/java.nio.file.Files.newByteChannel(Files.java:431)
	at java.base/java.nio.file.Files.readAllBytes(Files.java:3267)
	at org.hl7.fhir.utilities.FileUtilities.fileToBytes(FileUtilities.java:108)
	at org.hl7.fhir.r4.formats.FormatUtilities.loadFile(FormatUtilities.java:179)
	at org.hl7.fhir.igtools.publisher.PublisherIGLoader.initializeFromIg(PublisherIGLoader.java:254)
	... 3 more