HL7 Czech Lab Epidemiology Guide
0.0.1 - ci-build

HL7 Czech Lab Epidemiology Guide, published by HL7 Czech Republic. This guide is not an authorized publication; it is the continuous build for version 0.0.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7-cz/lab-epi/ and changes regularly. See the Directory of published versions

## ConceptMap: SLR Body (EN) to CZ Lab (message) mapping (Experimental)

Official URL: https://hl7.cz/fhir/lab-epi/ConceptMap/SLRBodyEn-to-CZLab | Version: 0.0.1
Draft as of 2025-12-19 | Computable Name: SLRBodyEnToCZLab

Maps SLR Body logical model to CZ Lab message profiles

Shows how body data elements map to ServiceRequest/Specimen/DiagnosticReport/Observation/etc.

Mapping from https://example.org/fhir/StructureDefinition/SLRBodyEn to https://example.org/fhir/ImplementationGuide/cz-lab-message

Group 1 Mapping from `https://example.org/fhir/StructureDefinition/SLRBodyEn` to ServiceRequest – CZ Lab Order (message context)

Source Code | Relationship | Target Code | Comment
SLRBodyEn.body.order.identifier (Order number) | is equivalent to | ServiceRequest.identifier |
SLRBodyEn.body.order.reason (Order reason (diagnosis)) | is equivalent to | ServiceRequest.reasonCode | ICD-10 (MKN-10) where applicable.

Group 2 Mapping from `https://example.org/fhir/StructureDefinition/SLRBodyEn` to DiagnosticReport – CZ Lab Report (message payload)

Source Code | Relationship | Target Code | Comment
SLRBodyEn.body.order (Order) | is related to | DiagnosticReport.basedOn | Reference(ServiceRequest).

Group 3 Mapping from `https://example.org/fhir/StructureDefinition/SLRBodyEn` to Specimen – CZ Lab

Source Code | Relationship | Target Code
SLRBodyEn.body.specimen.sampleNumber (Sample identifier) | is equivalent to | Specimen.identifier
SLRBodyEn.body.specimen.collectionDate (Collection date/time) | is equivalent to | Specimen.collection.collectedDateTime
SLRBodyEn.body.specimen.material (Material (Specimen type)) | is equivalent to | Specimen.type

Group 4 Mapping from `https://example.org/fhir/StructureDefinition/SLRBodyEn` to DiagnosticReport – CZ Lab Report (message payload)

Source Code | Relationship | Target Code
SLRBodyEn.body.specimen (Specimen info) | is related to | DiagnosticReport.specimen

Group 5 Mapping from `https://example.org/fhir/StructureDefinition/SLRBodyEn` to Observation – CZ Lab Result (qual/quant, AST)

Source Code | Relationship | Target Code
SLRBodyEn.body.specimen (Specimen info) | is related to | Observation.specimen

Group 6 Mapping from `https://example.org/fhir/StructureDefinition/SLRBodyEn` to Observation – CZ Lab Result (qual/quant, AST)

Source Code | Relationship | Target Code | Comment
SLRBodyEn.body.result.examDate (Examination date/time) | is equivalent to | Observation.effectiveDateTime |
SLRBodyEn.body.result.method (Method) | is related to | Observation.method |
SLRBodyEn.body.result.analyteOrAgent (Analyte / Agent) | is equivalent to | Observation.code | Tested analyte/agent (e.g., detection of pathogen).
SLRBodyEn.body.result.qualitativeResult (Qualitative result) | is equivalent to | Observation.valueCodeableConcept |
SLRBodyEn.body.result.quantitativeResult.value (Quantitative value) | is equivalent to | Observation.valueQuantity | Use UCUM units.
SLRBodyEn.body.result.quantitativeResult.unit (Unit (UCUM)) | is related to | Observation.valueQuantity.unit |
SLRBodyEn.body.result.cutOff (Cut-off) | is related to | Observation.referenceRange | Model cut-off in referenceRange.low/high.
SLRBodyEn.body.result.antibiotic (Antibiotic susceptibility (S/I/R)) | is related to | Observation | Model as multiple Observations (code=susceptibility test, value=S/I/R).

Group 7 Mapping from `https://example.org/fhir/StructureDefinition/SLRBodyEn` to DiagnosticReport – CZ Lab Report (message payload)

Source Code | Relationship | Target Code
SLRBodyEn.body.result (Results) | is related to | DiagnosticReport.result

Group 8 Mapping from `https://example.org/fhir/StructureDefinition/SLRBodyEn` to MedicationStatement – ATB/ATV před odběrem

Source Code | Relationship | Target Code | Comment
SLRBodyEn.body.clinicalInformation.priorTherapy (Antiviral/antibiotic therapy before collection) | is related to | MedicationStatement | Use adherence/effective[x]/medicationCodeableConcept (SÚKL).

Group 9 Mapping from `https://example.org/fhir/StructureDefinition/SLRBodyEn` to Patient – CZ Lab (RID)

Source Code | Relationship | Target Code | Comment
SLRBodyEn.body.clinicalInformation.symptomOnset (Symptom onset date) | (not mapped) | Prefer Condition.onsetDateTime or a dedicated Observation; extension here only if required.

Group 10 Mapping from `https://example.org/fhir/StructureDefinition/SLRBodyEn` to Organization – CZ Lab (IČO/PCZ/ICP)

Source Code | Relationship | Target Code
SLRBodyEn.body.laboratory.organizationIdentifiers (Lab organization IČO/PCZ/ICP) | is equivalent to | Organization.identifier

Group 11 Mapping from `https://example.org/fhir/StructureDefinition/SLRBodyEn` to DiagnosticReport – CZ Lab Report (message payload)

Source Code | Relationship | Target Code
SLRBodyEn.body.laboratory (Performing laboratory) | is related to | DiagnosticReport.performer

Group 12 Mapping from `https://example.org/fhir/StructureDefinition/SLRBodyEn` to DiagnosticReport – CZ Lab Report (message payload)

Source Code | Relationship | Target Code
SLRBodyEn.body.presentedForm (Presented form (PDF, etc.)) | is related to | DiagnosticReport.presentedForm
SLRBodyEn.body.attachments (Additional attachments) | is related to | DiagnosticReport.media.link.content.attachment