HL7 Czech Lab Epidemiology Guide
0.0.1 - ci-build

HL7 Czech Lab Epidemiology Guide, published by HL7 Czech Republic. This guide is not an authorized publication; it is the continuous build for version 0.0.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7-cz/lab-epi/ and changes regularly. See the Directory of published versions

## : SLR Body (EN) to CZ Lab (message) mapping - JSON Representation

Draft as of 2025-12-19

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    {
      "resourceType" : "ConceptMap",
      "id" : "SLRBodyEn-to-CZLab",
      "text" : {
        "status" : "generated",
        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap SLRBodyEn-to-CZLab</b></p><a name=\"SLRBodyEn-to-CZLab\"> </a><a name=\"hcSLRBodyEn-to-CZLab\"> </a><p>Mapping from https://example.org/fhir/StructureDefinition/SLRBodyEn to https://example.org/fhir/ImplementationGuide/cz-lab-message</p><br/><p><b>Group 1 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href=\"StructureDefinition-cz-lab-servicerequest.html\">ServiceRequest – CZ Lab Order (message context)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>SLRBodyEn.body.order.identifier (Order number)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>ServiceRequest.identifier</td><td/></tr><tr><td>SLRBodyEn.body.order.reason (Order reason (diagnosis))</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>ServiceRequest.reasonCode</td><td>ICD-10 (MKN-10) where applicable.</td></tr></table><hr/><p><b>Group 2 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href=\"StructureDefinition-cz-labreport-dr.html\">DiagnosticReport – CZ Lab Report (message payload)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>SLRBodyEn.body.order (Order)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td>DiagnosticReport.basedOn</td><td>Reference(ServiceRequest).</td></tr></table><hr/><p><b>Group 3 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href=\"StructureDefinition-cz-lab-specimen.html\">Specimen – CZ Lab</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.specimen.sampleNumber (Sample identifier)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.identifier</td></tr><tr><td>SLRBodyEn.body.specimen.collectionDate (Collection date/time)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.collection.collectedDateTime</td></tr><tr><td>SLRBodyEn.body.specimen.material (Material (Specimen type))</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Specimen.type</td></tr></table><hr/><p><b>Group 4 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href=\"StructureDefinition-cz-labreport-dr.html\">DiagnosticReport – CZ Lab Report (message payload)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.specimen (Specimen info)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td>DiagnosticReport.specimen</td></tr></table><hr/><p><b>Group 5 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href=\"StructureDefinition-cz-labresult-obs.html\">Observation – CZ Lab Result (qual/quant, AST)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.specimen (Specimen info)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.specimen</td></tr></table><hr/><p><b>Group 6 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href=\"StructureDefinition-cz-labresult-obs.html\">Observation – CZ Lab Result (qual/quant, AST)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>SLRBodyEn.body.result.examDate (Examination date/time)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Observation.effectiveDateTime</td><td/></tr><tr><td>SLRBodyEn.body.result.method (Method)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.method</td><td/></tr><tr><td>SLRBodyEn.body.result.analyteOrAgent (Analyte / Agent)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Observation.code</td><td>Tested analyte/agent (e.g., detection of pathogen).</td></tr><tr><td>SLRBodyEn.body.result.qualitativeResult (Qualitative result)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Observation.valueCodeableConcept</td><td/></tr><tr><td>SLRBodyEn.body.result.quantitativeResult.value (Quantitative value)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Observation.valueQuantity</td><td>Use UCUM units.</td></tr><tr><td>SLRBodyEn.body.result.quantitativeResult.unit (Unit (UCUM))</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.valueQuantity.unit</td><td/></tr><tr><td>SLRBodyEn.body.result.cutOff (Cut-off)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation.referenceRange</td><td>Model cut-off in referenceRange.low/high.</td></tr><tr><td>SLRBodyEn.body.result.antibiotic (Antibiotic susceptibility (S/I/R))</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td>Observation</td><td>Model as multiple Observations (code=susceptibility test, value=S/I/R).</td></tr></table><hr/><p><b>Group 7 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href=\"StructureDefinition-cz-labreport-dr.html\">DiagnosticReport – CZ Lab Report (message payload)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.result (Results)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td>DiagnosticReport.result</td></tr></table><hr/><p><b>Group 8 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href=\"StructureDefinition-cz-lab-medicationstatement.html\">MedicationStatement – ATB/ATV před odběrem</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>SLRBodyEn.body.clinicalInformation.priorTherapy (Antiviral/antibiotic therapy before collection)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td>MedicationStatement</td><td>Use adherence/effective[x]/medicationCodeableConcept (SÚKL).</td></tr></table><hr/><p><b>Group 9 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href=\"StructureDefinition-cz-lab-patient.html\">Patient – CZ Lab (RID)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>SLRBodyEn.body.clinicalInformation.symptomOnset (Symptom onset date)</td><td colspan=\"2\" style=\"background-color: #efefef\">(not mapped)</td><td style=\"background-color: #efefef\">Prefer Condition.onsetDateTime or a dedicated Observation; extension here only if required.</td></tr></table><hr/><p><b>Group 10 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href=\"StructureDefinition-cz-lab-organization.html\">Organization – CZ Lab (IČO/PCZ/ICP)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.laboratory.organizationIdentifiers (Lab organization IČO/PCZ/ICP)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Organization.identifier</td></tr></table><hr/><p><b>Group 11 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href=\"StructureDefinition-cz-labreport-dr.html\">DiagnosticReport – CZ Lab Report (message payload)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.laboratory (Performing laboratory)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td>DiagnosticReport.performer</td></tr></table><hr/><p><b>Group 12 </b>Mapping from <code>https://example.org/fhir/StructureDefinition/SLRBodyEn</code> to <a href=\"StructureDefinition-cz-labreport-dr.html\">DiagnosticReport – CZ Lab Report (message payload)</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td></tr><tr><td>SLRBodyEn.body.presentedForm (Presented form (PDF, etc.))</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td>DiagnosticReport.presentedForm</td></tr><tr><td>SLRBodyEn.body.attachments (Additional attachments)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td>DiagnosticReport.media.link.content.attachment</td></tr></table></div>"
      },
      "url" : "https://hl7.cz/fhir/lab-epi/ConceptMap/SLRBodyEn-to-CZLab",
      "version" : "0.0.1",
      "name" : "SLRBodyEnToCZLab",
      "title" : "SLR Body (EN) to CZ Lab (message) mapping",
      "status" : "draft",
      "experimental" : true,
      "date" : "2025-12-19T07:33:21+00:00",
      "publisher" : "HL7 Czech Republic",
      "contact" : [
        {
          "name" : "HL7 Czech Republic",
          "telecom" : [
            {
              "system" : "url",
              "value" : "https://www.hl7.cz/"
            }
          ]
        }
      ],
      "description" : "Maps SLR Body logical model to CZ Lab message profiles",
      "jurisdiction" : [
        {
          "coding" : [
            {
              "system" : "urn:iso:std:iso:3166",
              "code" : "CZ",
              "display" : "Czechia"
            }
          ]
        }
      ],
      "purpose" : "Shows how body data elements map to ServiceRequest/Specimen/DiagnosticReport/Observation/etc.",
      "sourceUri" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
      "targetUri" : "https://example.org/fhir/ImplementationGuide/cz-lab-message",
      "group" : [
        {
          "source" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
          "target" : "https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-lab-servicerequest",
          "element" : [
            {
              "code" : "SLRBodyEn.body.order.identifier",
              "display" : "Order number",
              "target" : [
                {
                  "code" : "ServiceRequest.identifier",
                  "equivalence" : "equivalent"
                }
              ]
            },
            {
              "code" : "SLRBodyEn.body.order.reason",
              "display" : "Order reason (diagnosis)",
              "target" : [
                {
                  "code" : "ServiceRequest.reasonCode",
                  "equivalence" : "equivalent",
                  "comment" : "ICD-10 (MKN-10) where applicable."
                }
              ]
            }
          ]
        },
        {
          "source" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
          "target" : "https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labreport-dr",
          "element" : [
            {
              "code" : "SLRBodyEn.body.order",
              "display" : "Order",
              "target" : [
                {
                  "code" : "DiagnosticReport.basedOn",
                  "equivalence" : "relatedto",
                  "comment" : "Reference(ServiceRequest)."
                }
              ]
            }
          ]
        },
        {
          "source" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
          "target" : "https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-lab-specimen",
          "element" : [
            {
              "code" : "SLRBodyEn.body.specimen.sampleNumber",
              "display" : "Sample identifier",
              "target" : [
                {
                  "code" : "Specimen.identifier",
                  "equivalence" : "equivalent"
                }
              ]
            },
            {
              "code" : "SLRBodyEn.body.specimen.collectionDate",
              "display" : "Collection date/time",
              "target" : [
                {
                  "code" : "Specimen.collection.collectedDateTime",
                  "equivalence" : "equivalent"
                }
              ]
            },
            {
              "code" : "SLRBodyEn.body.specimen.material",
              "display" : "Material (Specimen type)",
              "target" : [
                {
                  "code" : "Specimen.type",
                  "equivalence" : "equivalent"
                }
              ]
            }
          ]
        },
        {
          "source" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
          "target" : "https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labreport-dr",
          "element" : [
            {
              "code" : "SLRBodyEn.body.specimen",
              "display" : "Specimen info",
              "target" : [
                {
                  "code" : "DiagnosticReport.specimen",
                  "equivalence" : "relatedto"
                }
              ]
            }
          ]
        },
        {
          "source" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
          "target" : "https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labresult-obs",
          "element" : [
            {
              "code" : "SLRBodyEn.body.specimen",
              "display" : "Specimen info",
              "target" : [
                {
                  "code" : "Observation.specimen",
                  "equivalence" : "relatedto"
                }
              ]
            }
          ]
        },
        {
          "source" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
          "target" : "https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labresult-obs",
          "element" : [
            {
              "code" : "SLRBodyEn.body.result.examDate",
              "display" : "Examination date/time",
              "target" : [
                {
                  "code" : "Observation.effectiveDateTime",
                  "equivalence" : "equivalent"
                }
              ]
            },
            {
              "code" : "SLRBodyEn.body.result.method",
              "display" : "Method",
              "target" : [
                {
                  "code" : "Observation.method",
                  "equivalence" : "relatedto"
                }
              ]
            },
            {
              "code" : "SLRBodyEn.body.result.analyteOrAgent",
              "display" : "Analyte / Agent",
              "target" : [
                {
                  "code" : "Observation.code",
                  "equivalence" : "equivalent",
                  "comment" : "Tested analyte/agent (e.g., detection of pathogen)."
                }
              ]
            },
            {
              "code" : "SLRBodyEn.body.result.qualitativeResult",
              "display" : "Qualitative result",
              "target" : [
                {
                  "code" : "Observation.valueCodeableConcept",
                  "equivalence" : "equivalent"
                }
              ]
            },
            {
              "code" : "SLRBodyEn.body.result.quantitativeResult.value",
              "display" : "Quantitative value",
              "target" : [
                {
                  "code" : "Observation.valueQuantity",
                  "equivalence" : "equivalent",
                  "comment" : "Use UCUM units."
                }
              ]
            },
            {
              "code" : "SLRBodyEn.body.result.quantitativeResult.unit",
              "display" : "Unit (UCUM)",
              "target" : [
                {
                  "code" : "Observation.valueQuantity.unit",
                  "equivalence" : "relatedto"
                }
              ]
            },
            {
              "code" : "SLRBodyEn.body.result.cutOff",
              "display" : "Cut-off",
              "target" : [
                {
                  "code" : "Observation.referenceRange",
                  "equivalence" : "relatedto",
                  "comment" : "Model cut-off in referenceRange.low/high."
                }
              ]
            },
            {
              "code" : "SLRBodyEn.body.result.antibiotic",
              "display" : "Antibiotic susceptibility (S/I/R)",
              "target" : [
                {
                  "code" : "Observation",
                  "equivalence" : "relatedto",
                  "comment" : "Model as multiple Observations (code=susceptibility test, value=S/I/R)."
                }
              ]
            }
          ]
        },
        {
          "source" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
          "target" : "https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labreport-dr",
          "element" : [
            {
              "code" : "SLRBodyEn.body.result",
              "display" : "Results",
              "target" : [
                {
                  "code" : "DiagnosticReport.result",
                  "equivalence" : "relatedto"
                }
              ]
            }
          ]
        },
        {
          "source" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
          "target" : "https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-lab-medicationstatement",
          "element" : [
            {
              "code" : "SLRBodyEn.body.clinicalInformation.priorTherapy",
              "display" : "Antiviral/antibiotic therapy before collection",
              "target" : [
                {
                  "code" : "MedicationStatement",
                  "equivalence" : "relatedto",
                  "comment" : "Use adherence/effective[x]/medicationCodeableConcept (SÚKL)."
                }
              ]
            }
          ]
        },
        {
          "source" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
          "target" : "https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-lab-patient",
          "element" : [
            {
              "code" : "SLRBodyEn.body.clinicalInformation.symptomOnset",
              "display" : "Symptom onset date",
              "target" : [
                {
                  "equivalence" : "unmatched",
                  "comment" : "Prefer Condition.onsetDateTime or a dedicated Observation; extension here only if required."
                }
              ]
            }
          ]
        },
        {
          "source" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
          "target" : "https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-lab-organization",
          "element" : [
            {
              "code" : "SLRBodyEn.body.laboratory.organizationIdentifiers",
              "display" : "Lab organization IČO/PCZ/ICP",
              "target" : [
                {
                  "code" : "Organization.identifier",
                  "equivalence" : "equivalent"
                }
              ]
            }
          ]
        },
        {
          "source" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
          "target" : "https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labreport-dr",
          "element" : [
            {
              "code" : "SLRBodyEn.body.laboratory",
              "display" : "Performing laboratory",
              "target" : [
                {
                  "code" : "DiagnosticReport.performer",
                  "equivalence" : "relatedto"
                }
              ]
            }
          ]
        },
        {
          "source" : "https://example.org/fhir/StructureDefinition/SLRBodyEn",
          "target" : "https://hl7.cz/fhir/lab-epi/StructureDefinition/cz-labreport-dr",
          "element" : [
            {
              "code" : "SLRBodyEn.body.presentedForm",
              "display" : "Presented form (PDF, etc.)",
              "target" : [
                {
                  "code" : "DiagnosticReport.presentedForm",
                  "equivalence" : "relatedto"
                }
              ]
            },
            {
              "code" : "SLRBodyEn.body.attachments",
              "display" : "Additional attachments",
              "target" : [
                {
                  "code" : "DiagnosticReport.media.link.content.attachment",
                  "equivalence" : "relatedto"
                }
              ]
            }
          ]
        }
      ]
    }