HL7 CZ Laboratory IG, published by HL7 Czech Republic. This guide is not an authorized publication; it is the continuous build for version 0.5.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7-cz/cz-lab/ and changes regularly. See the Directory of published versions

• Content
• Detailed Descriptions
• Mappings
• XML
• JSON
• TTL

Resource Profile: Specimen: Obligations

This profile defines obligations for a specimen in FHIR for the purpose of this guide.

Usages:

• This Profile is not used by any profiles in this Implementation Guide

You can also check for usages in the FHIR IG Statistics

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

• Key Elements Table
• Differential Table
• Snapshot Table
• Statistics/References
• All

Name	Flags	Card.	Type	Description & Constraints    Filter: Bindings Constraints Obligations
Specimen		0..*	CZ_SpecimenLab	Czech Specimen This profile also imposes the profile Specimen: Laboratory
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
modifierExtension	?!	0..*	Extension	Extensions that cannot be ignored
identifier	SOΣ	0..*	Identifier	External Identifier Obligations Actor SHOULD:able-to-populate LabCreator-L1 SHOULD:display LabConsumer-L1
status	?!SΣ	0..1	code	available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
type	OΣ	0..1	CodeableConcept	Kind of material that forms the specimen Binding: Specimen Type (preferred) Obligations Actor SHALL:able-to-populate LabCreator-L1 SHALL:display LabConsumer-L1
subject	SOΣ	0..1	Reference(Group | Device: Performer/Observer (CZ) | Medical Device (CZ) | Substance | Location (CZ core) | Patient (CZ core))	In the initial iteration of the Czech interoperability project, this is CZ_PatientCore. Obligations Actor SHALL:able-to-populate LabCreator-L1 SHALL:display LabConsumer-L1
receivedTime	SΣ	0..1	dateTime	The time when specimen was received for processing
parent	S	0..*	Reference(Specimen (CZ))	Specimen from which this specimen originated
request	S	0..*	Reference(ServiceRequest)	Why the specimen was collected
collection	S	0..1	BackboneElement	Collection details
Slices for extension				Content/Rules for all slices
extension:bodySite		0..1	(Complex)	Target anatomic location or structure URL: http://hl7.org/fhir/StructureDefinition/bodySite
extension		0..0
url		1..1	uri	"http://hl7.org/fhir/StructureDefinition/bodySite"
value[x]		1..1	Reference(Body Structure (CZ))	Value of extension
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
Slices for collected[x]	Σ	0..1		Collection time Slice: Unordered, Open by type:$this
collectedDateTime			dateTime
collectedPeriod			Period
collected[x]:collectedDateTime	OΣ	0..1	dateTime	Collection time Obligations Actor SHOULD:able-to-populate LabCreator-L1 SHOULD:display LabConsumer-L1
container	S	0..*	BackboneElement	Direct container of specimen (tube/slide, etc.)
Slices for extension				Content/Rules for all slices
extension:device		0..1	(Complex)	Optional Extensions Element URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.device
extension		0..0
url		1..1	uri	"http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.device"
value[x]		1..1	Reference(Medical Device (CZ))	Value of extension
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
identifier	SΣ	0..*	Identifier	Id for the container
type	S	0..1	CodeableConcept	Kind of container directly associated with specimen Binding: Specimen Container (preferred)
condition	SΣ	0..*	CodeableConcept	State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen.
note	S	0..*	Annotation	Comments
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet	URI
Specimen.status	required	SpecimenStatus http://hl7.org/fhir/ValueSet/specimen-status|4.0.1 From the FHIR Standard
Specimen.type	preferred	CZ_SpecimenTypeVs https://hl7.cz/fhir/core/ValueSet/cz-specimentype-vs
Specimen.container.type	preferred	CZ_SpecimenContainerVs https://hl7.cz/fhir/core/ValueSet/cz-specimencontainer-vs
Specimen.condition	extensible	Hl7VSSpecimenCondition http://terminology.hl7.org/ValueSet/v2-0493

Constraints

Id	Grade	Path(s)	Details	Requirements
dom-2	error	Specimen	If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty()
dom-3	error	Specimen	If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4	error	Specimen	If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5	error	Specimen	If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty()
dom-6	best practice	Specimen	A resource should have narrative for robust management : text.`div`.exists()
ele-1	error	**ALL** elements	All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count())
ext-1	error	**ALL** extensions	Must have either extensions or value[x], not both : extension.exists() != value.exists()

This structure is derived from CZ_SpecimenLab

Name	Flags	Card.	Type	Description & Constraints    Filter: Bindings Constraints Obligations
Specimen		0..*	CZ_SpecimenLab	Czech Specimen This profile also imposes the profile Specimen: Laboratory
identifier	O	0..*	Identifier	External Identifier Obligations Actor SHOULD:able-to-populate LabCreator-L1 SHOULD:display LabConsumer-L1
type	O	0..1	CodeableConcept	Kind of material that forms the specimen Obligations Actor SHALL:able-to-populate LabCreator-L1 SHALL:display LabConsumer-L1
subject	O	0..1	Reference(Group | Device: Performer/Observer (CZ) | Medical Device (CZ) | Substance | Location (CZ core) | Patient (CZ core))	In the initial iteration of the Czech interoperability project, this is CZ_PatientCore. Obligations Actor SHALL:able-to-populate LabCreator-L1 SHALL:display LabConsumer-L1
collection
Slices for collected[x]		0..1	dateTime, Period	Collection time Slice: Unordered, Open by type:$this
collected[x]:collectedDateTime	O	0..1	dateTime	Collection time Obligations Actor SHOULD:able-to-populate LabCreator-L1 SHOULD:display LabConsumer-L1
Documentation for this format

Name	Flags	Card.	Type	Description & Constraints    Filter: Bindings Constraints Obligations
Specimen		0..*	CZ_SpecimenLab	Czech Specimen This profile also imposes the profile Specimen: Laboratory
id	Σ	0..1	id	Logical id of this artifact
meta	Σ	0..1	Meta	Metadata about the resource
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
language		0..1	code	Language of the resource content Binding: CommonLanguages (preferred): A human language. Additional Bindings Purpose AllLanguages Max Binding
text		0..1	Narrative	Text summary of the resource, for human interpretation This profile does not constrain the narrative in regard to content, language, or traceability to data elements
contained		0..*	Resource	Contained, inline Resources
extension		0..*	Extension	Additional content defined by implementations
modifierExtension	?!	0..*	Extension	Extensions that cannot be ignored
identifier	SOΣ	0..*	Identifier	External Identifier Obligations Actor SHOULD:able-to-populate LabCreator-L1 SHOULD:display LabConsumer-L1
accessionIdentifier	Σ	0..1	Identifier	Identifier assigned by the lab
status	?!SΣ	0..1	code	available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
type	OΣ	0..1	CodeableConcept	Kind of material that forms the specimen Binding: Specimen Type (preferred) Obligations Actor SHALL:able-to-populate LabCreator-L1 SHALL:display LabConsumer-L1
subject	SOΣ	0..1	Reference(Group | Device: Performer/Observer (CZ) | Medical Device (CZ) | Substance | Location (CZ core) | Patient (CZ core))	In the initial iteration of the Czech interoperability project, this is CZ_PatientCore. Obligations Actor SHALL:able-to-populate LabCreator-L1 SHALL:display LabConsumer-L1
receivedTime	SΣ	0..1	dateTime	The time when specimen was received for processing
parent	S	0..*	Reference(Specimen (CZ))	Specimen from which this specimen originated
request	S	0..*	Reference(ServiceRequest)	Why the specimen was collected
collection	S	0..1	BackboneElement	Collection details
id		0..1	string	Unique id for inter-element referencing
Slices for extension		0..*	Extension	Extension Slice: Unordered, Open by value:url
extension:bodySite		0..1	(Complex)	Target anatomic location or structure URL: http://hl7.org/fhir/StructureDefinition/bodySite
id		0..1	id	Unique id for inter-element referencing
extension		0..0
url		1..1	uri	"http://hl7.org/fhir/StructureDefinition/bodySite"
value[x]		1..1	Reference(Body Structure (CZ))	Value of extension
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
collector	Σ	0..1	Reference(Practitioner (CZ core) | Practitioner Role (CZ core))	Who collected the specimen
Slices for collected[x]	Σ	0..1		Collection time Slice: Unordered, Open by type:$this
collectedDateTime			dateTime
collectedPeriod			Period
collected[x]:collectedDateTime	OΣ	0..1	dateTime	Collection time Obligations Actor SHOULD:able-to-populate LabCreator-L1 SHOULD:display LabConsumer-L1
duration	Σ	0..1	Duration	How long it took to collect specimen
quantity		0..1	SimpleQuantity(4.0.1)	The quantity of specimen collected
method		0..1	CodeableConcept	Technique used to perform collection Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.
bodySite		0..1	CodeableConcept	Anatomical collection site Binding: SNOMEDCTBodyStructures (preferred)
fastingStatus[x]	Σ	0..1		Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.
fastingStatusCodeableConcept			CodeableConcept
fastingStatusDuration			Duration
processing		0..*	BackboneElement	Processing and processing step details to include when not implicit from specimen.
id		0..1	string	Unique id for inter-element referencing
extension		0..*	Extension	Additional content defined by implementations
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
description		0..1	string	Textual description of procedure
procedure		0..1	CodeableConcept	Indicates the treatment step applied to the specimen Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
additive		0..*	Reference(Substance | Substance: Specimen Additive Substance (CZ))	Material used in the processing step
time[x]		0..1		Date and time of specimen processing
timeDateTime			dateTime
timePeriod			Period
container	S	0..*	BackboneElement	Direct container of specimen (tube/slide, etc.)
id		0..1	string	Unique id for inter-element referencing
Slices for extension		0..*	Extension	Extension Slice: Unordered, Open by value:url
extension:device		0..1	(Complex)	Optional Extensions Element URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.device
id		0..1	string	Unique id for inter-element referencing
extension		0..0
url		1..1	uri	"http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.device"
value[x]		1..1	Reference(Medical Device (CZ))	Value of extension
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
identifier	SΣ	0..*	Identifier	Id for the container
description		0..1	string	Textual description of the container
type	S	0..1	CodeableConcept	Kind of container directly associated with specimen Binding: Specimen Container (preferred)
capacity		0..1	SimpleQuantity(4.0.1)	Container volume or size
specimenQuantity		0..1	SimpleQuantity(4.0.1)	Quantity of specimen within container
condition	SΣ	0..*	CodeableConcept	State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen.
note	S	0..*	Annotation	Comments
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet	URI
Specimen.language	preferred	CommonLanguages http://hl7.org/fhir/ValueSet/languages|4.0.1 From the FHIR Standard Additional Bindings Purpose AllLanguages Max Binding
Specimen.status	required	SpecimenStatus http://hl7.org/fhir/ValueSet/specimen-status|4.0.1 From the FHIR Standard
Specimen.type	preferred	CZ_SpecimenTypeVs https://hl7.cz/fhir/core/ValueSet/cz-specimentype-vs
Specimen.collection.method	example	FHIRSpecimenCollectionMethod http://hl7.org/fhir/ValueSet/specimen-collection-method|4.0.1 From the FHIR Standard
Specimen.collection.bodySite	preferred	SNOMEDCTBodyStructures http://hl7.org/fhir/ValueSet/body-site From the FHIR Standard
Specimen.collection.fastingStatus[x]	extensible	Hl7VSRelevantClincialInformation http://terminology.hl7.org/ValueSet/v2-0916
Specimen.processing.procedure	example	SpecimenProcessingProcedure http://hl7.org/fhir/ValueSet/specimen-processing-procedure|4.0.1 From the FHIR Standard
Specimen.container.type	preferred	CZ_SpecimenContainerVs https://hl7.cz/fhir/core/ValueSet/cz-specimencontainer-vs
Specimen.condition	extensible	Hl7VSSpecimenCondition http://terminology.hl7.org/ValueSet/v2-0493

Constraints

Id	Grade	Path(s)	Details	Requirements
dom-2	error	Specimen	If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty()
dom-3	error	Specimen	If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4	error	Specimen	If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5	error	Specimen	If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty()
dom-6	best practice	Specimen	A resource should have narrative for robust management : text.`div`.exists()
ele-1	error	**ALL** elements	All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count())
ext-1	error	**ALL** extensions	Must have either extensions or value[x], not both : extension.exists() != value.exists()

This structure is derived from CZ_SpecimenLab

Summary

Slices

This structure defines the following Slices:

• The element 1 is sliced based on the value of Specimen.collection.collected[x]

Maturity: 0

Key Elements View

Name	Flags	Card.	Type	Description & Constraints    Filter: Bindings Constraints Obligations
Specimen		0..*	CZ_SpecimenLab	Czech Specimen This profile also imposes the profile Specimen: Laboratory
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
modifierExtension	?!	0..*	Extension	Extensions that cannot be ignored
identifier	SOΣ	0..*	Identifier	External Identifier Obligations Actor SHOULD:able-to-populate LabCreator-L1 SHOULD:display LabConsumer-L1
status	?!SΣ	0..1	code	available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
type	OΣ	0..1	CodeableConcept	Kind of material that forms the specimen Binding: Specimen Type (preferred) Obligations Actor SHALL:able-to-populate LabCreator-L1 SHALL:display LabConsumer-L1
subject	SOΣ	0..1	Reference(Group | Device: Performer/Observer (CZ) | Medical Device (CZ) | Substance | Location (CZ core) | Patient (CZ core))	In the initial iteration of the Czech interoperability project, this is CZ_PatientCore. Obligations Actor SHALL:able-to-populate LabCreator-L1 SHALL:display LabConsumer-L1
receivedTime	SΣ	0..1	dateTime	The time when specimen was received for processing
parent	S	0..*	Reference(Specimen (CZ))	Specimen from which this specimen originated
request	S	0..*	Reference(ServiceRequest)	Why the specimen was collected
collection	S	0..1	BackboneElement	Collection details
Slices for extension				Content/Rules for all slices
extension:bodySite		0..1	(Complex)	Target anatomic location or structure URL: http://hl7.org/fhir/StructureDefinition/bodySite
extension		0..0
url		1..1	uri	"http://hl7.org/fhir/StructureDefinition/bodySite"
value[x]		1..1	Reference(Body Structure (CZ))	Value of extension
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
Slices for collected[x]	Σ	0..1		Collection time Slice: Unordered, Open by type:$this
collectedDateTime			dateTime
collectedPeriod			Period
collected[x]:collectedDateTime	OΣ	0..1	dateTime	Collection time Obligations Actor SHOULD:able-to-populate LabCreator-L1 SHOULD:display LabConsumer-L1
container	S	0..*	BackboneElement	Direct container of specimen (tube/slide, etc.)
Slices for extension				Content/Rules for all slices
extension:device		0..1	(Complex)	Optional Extensions Element URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.device
extension		0..0
url		1..1	uri	"http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.device"
value[x]		1..1	Reference(Medical Device (CZ))	Value of extension
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
identifier	SΣ	0..*	Identifier	Id for the container
type	S	0..1	CodeableConcept	Kind of container directly associated with specimen Binding: Specimen Container (preferred)
condition	SΣ	0..*	CodeableConcept	State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen.
note	S	0..*	Annotation	Comments
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet	URI
Specimen.status	required	SpecimenStatus http://hl7.org/fhir/ValueSet/specimen-status|4.0.1 From the FHIR Standard
Specimen.type	preferred	CZ_SpecimenTypeVs https://hl7.cz/fhir/core/ValueSet/cz-specimentype-vs
Specimen.container.type	preferred	CZ_SpecimenContainerVs https://hl7.cz/fhir/core/ValueSet/cz-specimencontainer-vs
Specimen.condition	extensible	Hl7VSSpecimenCondition http://terminology.hl7.org/ValueSet/v2-0493

Constraints

Id	Grade	Path(s)	Details	Requirements
dom-2	error	Specimen	If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty()
dom-3	error	Specimen	If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4	error	Specimen	If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5	error	Specimen	If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty()
dom-6	best practice	Specimen	A resource should have narrative for robust management : text.`div`.exists()
ele-1	error	**ALL** elements	All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count())
ext-1	error	**ALL** extensions	Must have either extensions or value[x], not both : extension.exists() != value.exists()

Differential View

This structure is derived from CZ_SpecimenLab

Name	Flags	Card.	Type	Description & Constraints    Filter: Bindings Constraints Obligations
Specimen		0..*	CZ_SpecimenLab	Czech Specimen This profile also imposes the profile Specimen: Laboratory
identifier	O	0..*	Identifier	External Identifier Obligations Actor SHOULD:able-to-populate LabCreator-L1 SHOULD:display LabConsumer-L1
type	O	0..1	CodeableConcept	Kind of material that forms the specimen Obligations Actor SHALL:able-to-populate LabCreator-L1 SHALL:display LabConsumer-L1
subject	O	0..1	Reference(Group | Device: Performer/Observer (CZ) | Medical Device (CZ) | Substance | Location (CZ core) | Patient (CZ core))	In the initial iteration of the Czech interoperability project, this is CZ_PatientCore. Obligations Actor SHALL:able-to-populate LabCreator-L1 SHALL:display LabConsumer-L1
collection
Slices for collected[x]		0..1	dateTime, Period	Collection time Slice: Unordered, Open by type:$this
collected[x]:collectedDateTime	O	0..1	dateTime	Collection time Obligations Actor SHOULD:able-to-populate LabCreator-L1 SHOULD:display LabConsumer-L1
Documentation for this format

Snapshot View

Name	Flags	Card.	Type	Description & Constraints    Filter: Bindings Constraints Obligations
Specimen		0..*	CZ_SpecimenLab	Czech Specimen This profile also imposes the profile Specimen: Laboratory
id	Σ	0..1	id	Logical id of this artifact
meta	Σ	0..1	Meta	Metadata about the resource
implicitRules	?!Σ	0..1	uri	A set of rules under which this content was created
language		0..1	code	Language of the resource content Binding: CommonLanguages (preferred): A human language. Additional Bindings Purpose AllLanguages Max Binding
text		0..1	Narrative	Text summary of the resource, for human interpretation This profile does not constrain the narrative in regard to content, language, or traceability to data elements
contained		0..*	Resource	Contained, inline Resources
extension		0..*	Extension	Additional content defined by implementations
modifierExtension	?!	0..*	Extension	Extensions that cannot be ignored
identifier	SOΣ	0..*	Identifier	External Identifier Obligations Actor SHOULD:able-to-populate LabCreator-L1 SHOULD:display LabConsumer-L1
accessionIdentifier	Σ	0..1	Identifier	Identifier assigned by the lab
status	?!SΣ	0..1	code	available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
type	OΣ	0..1	CodeableConcept	Kind of material that forms the specimen Binding: Specimen Type (preferred) Obligations Actor SHALL:able-to-populate LabCreator-L1 SHALL:display LabConsumer-L1
subject	SOΣ	0..1	Reference(Group | Device: Performer/Observer (CZ) | Medical Device (CZ) | Substance | Location (CZ core) | Patient (CZ core))	In the initial iteration of the Czech interoperability project, this is CZ_PatientCore. Obligations Actor SHALL:able-to-populate LabCreator-L1 SHALL:display LabConsumer-L1
receivedTime	SΣ	0..1	dateTime	The time when specimen was received for processing
parent	S	0..*	Reference(Specimen (CZ))	Specimen from which this specimen originated
request	S	0..*	Reference(ServiceRequest)	Why the specimen was collected
collection	S	0..1	BackboneElement	Collection details
id		0..1	string	Unique id for inter-element referencing
Slices for extension		0..*	Extension	Extension Slice: Unordered, Open by value:url
extension:bodySite		0..1	(Complex)	Target anatomic location or structure URL: http://hl7.org/fhir/StructureDefinition/bodySite
id		0..1	id	Unique id for inter-element referencing
extension		0..0
url		1..1	uri	"http://hl7.org/fhir/StructureDefinition/bodySite"
value[x]		1..1	Reference(Body Structure (CZ))	Value of extension
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
collector	Σ	0..1	Reference(Practitioner (CZ core) | Practitioner Role (CZ core))	Who collected the specimen
Slices for collected[x]	Σ	0..1		Collection time Slice: Unordered, Open by type:$this
collectedDateTime			dateTime
collectedPeriod			Period
collected[x]:collectedDateTime	OΣ	0..1	dateTime	Collection time Obligations Actor SHOULD:able-to-populate LabCreator-L1 SHOULD:display LabConsumer-L1
duration	Σ	0..1	Duration	How long it took to collect specimen
quantity		0..1	SimpleQuantity(4.0.1)	The quantity of specimen collected
method		0..1	CodeableConcept	Technique used to perform collection Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.
bodySite		0..1	CodeableConcept	Anatomical collection site Binding: SNOMEDCTBodyStructures (preferred)
fastingStatus[x]	Σ	0..1		Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.
fastingStatusCodeableConcept			CodeableConcept
fastingStatusDuration			Duration
processing		0..*	BackboneElement	Processing and processing step details to include when not implicit from specimen.
id		0..1	string	Unique id for inter-element referencing
extension		0..*	Extension	Additional content defined by implementations
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
description		0..1	string	Textual description of procedure
procedure		0..1	CodeableConcept	Indicates the treatment step applied to the specimen Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
additive		0..*	Reference(Substance | Substance: Specimen Additive Substance (CZ))	Material used in the processing step
time[x]		0..1		Date and time of specimen processing
timeDateTime			dateTime
timePeriod			Period
container	S	0..*	BackboneElement	Direct container of specimen (tube/slide, etc.)
id		0..1	string	Unique id for inter-element referencing
Slices for extension		0..*	Extension	Extension Slice: Unordered, Open by value:url
extension:device		0..1	(Complex)	Optional Extensions Element URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.device
id		0..1	string	Unique id for inter-element referencing
extension		0..0
url		1..1	uri	"http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.device"
value[x]		1..1	Reference(Medical Device (CZ))	Value of extension
modifierExtension	?!Σ	0..*	Extension	Extensions that cannot be ignored even if unrecognized
identifier	SΣ	0..*	Identifier	Id for the container
description		0..1	string	Textual description of the container
type	S	0..1	CodeableConcept	Kind of container directly associated with specimen Binding: Specimen Container (preferred)
capacity		0..1	SimpleQuantity(4.0.1)	Container volume or size
specimenQuantity		0..1	SimpleQuantity(4.0.1)	Quantity of specimen within container
condition	SΣ	0..*	CodeableConcept	State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen.
note	S	0..*	Annotation	Comments
Documentation for this format

Terminology Bindings

Path	Conformance	ValueSet	URI
Specimen.language	preferred	CommonLanguages http://hl7.org/fhir/ValueSet/languages|4.0.1 From the FHIR Standard Additional Bindings Purpose AllLanguages Max Binding
Specimen.status	required	SpecimenStatus http://hl7.org/fhir/ValueSet/specimen-status|4.0.1 From the FHIR Standard
Specimen.type	preferred	CZ_SpecimenTypeVs https://hl7.cz/fhir/core/ValueSet/cz-specimentype-vs
Specimen.collection.method	example	FHIRSpecimenCollectionMethod http://hl7.org/fhir/ValueSet/specimen-collection-method|4.0.1 From the FHIR Standard
Specimen.collection.bodySite	preferred	SNOMEDCTBodyStructures http://hl7.org/fhir/ValueSet/body-site From the FHIR Standard
Specimen.collection.fastingStatus[x]	extensible	Hl7VSRelevantClincialInformation http://terminology.hl7.org/ValueSet/v2-0916
Specimen.processing.procedure	example	SpecimenProcessingProcedure http://hl7.org/fhir/ValueSet/specimen-processing-procedure|4.0.1 From the FHIR Standard
Specimen.container.type	preferred	CZ_SpecimenContainerVs https://hl7.cz/fhir/core/ValueSet/cz-specimencontainer-vs
Specimen.condition	extensible	Hl7VSSpecimenCondition http://terminology.hl7.org/ValueSet/v2-0493

Constraints

Id	Grade	Path(s)	Details	Requirements
dom-2	error	Specimen	If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty()
dom-3	error	Specimen	If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4	error	Specimen	If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5	error	Specimen	If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty()
dom-6	best practice	Specimen	A resource should have narrative for robust management : text.`div`.exists()
ele-1	error	**ALL** elements	All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count())
ext-1	error	**ALL** extensions	Must have either extensions or value[x], not both : extension.exists() != value.exists()

This structure is derived from CZ_SpecimenLab

Summary

Slices

This structure defines the following Slices:

• The element 1 is sliced based on the value of Specimen.collection.collected[x]

Maturity: 0

Other representations of profile: CSV, Excel, Schematron