INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/FirelyTeam/enhancing-oncology-model-ig --branch validation-examples repo DEBUG:root:Time to deadline 35879.997959 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.479873 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.708281 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.7.0 npm notice Changelog: npm notice Run `npm install -g npm@11.7.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/FirelyTeam/enhancing-oncology-model-ig/ -out /scratch/repo DEBUG:root:Time to deadline 35870.054667 seconds FHIR IG Publisher Version 2.0.29 (Git# 826a7eb003d6). Built 2025-12-17T01:19:30.102Z (30 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/FirelyTeam/enhancing-oncology-model-ig/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Friday, January 16, 2026, 3:23:40 AM Coordinated Universal Time (2026-01-16T03:23:40Z) Build FHIR IG from /scratch/repo (00:00.025 / 00:00.025, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.028, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.031, 97Mb) Root directory: /scratch/repo (00:00.009 / 00:00.041, 97Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.710 / 00:00.751, 37Mb) Load Template from fhir.base.template#current (00:00.642 / 00:01.393, 70Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:06.237 / 00:07.631, 141Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:07.632, 141Mb) Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Running Terminology Log: /tmp/ohfu-fhir-ig-4288100675226153258.html Connect to Terminology Server at http://tx.fhir.org (00:48.498 / 00:56.131, 637Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r4#7.0.1 to the package cache  Fetching:  Installing hl7.terminology.r4#7.0.1  done. Load Package hl7.terminology.r4#7.0.1 Installing hl7.fhir.us.mcode#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.mcode#3.0.0  done. Installing hl7.terminology.r4#5.3.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.3.0  done. Load Package hl7.terminology.r4#5.3.0 Installing hl7.fhir.us.core#5.0.1 to the package cache  Fetching:  Installing hl7.fhir.us.core#5.0.1  done. Installing hl7.terminology.r4#3.1.0 to the package cache  Fetching:  Installing hl7.terminology.r4#3.1.0  done. Load Package hl7.terminology.r4#3.1.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#2.0.0  done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Installing us.nlm.vsac#0.7.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.7.0  done. Load Package us.nlm.vsac#0.7.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (03:27.694 / 04:23.825, 1Gb) Load Package hl7.fhir.uv.sdc#3.0.0 Load Package hl7.fhir.us.core#5.0.1 Installing hl7.fhir.uv.genomics-reporting#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.genomics-reporting#2.0.0  done. Load Package hl7.fhir.uv.genomics-reporting#2.0.0 Installing hl7.fhir.uv.extensions.r4#5.1.0-ballot1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0-ballot1  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0-ballot1 Load Package hl7.fhir.us.mcode#3.0.0 Load Package hl7.fhir.us.core#5.0.1 Load Package hl7.fhir.uv.genomics-reporting#2.0.0 Installing hl7.fhir.uv.extensions#current to the package cache  Fetching:  Installing hl7.fhir.uv.extensions#current  done. Version mismatch. This IG is version 4.0.1, while the IG 'hl7.fhir.uv.extensions' is from version 5.0.0 (will try to run anyway) (00:15.577 / 04:39.403, 2Gb) Installing hl7.terminology.r5#6.5.0 to the package cache  Fetching:  Installing hl7.terminology.r5#6.5.0  done. Installing hl7.fhir.uv.extensions.r5#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r5#5.2.0  done. Version mismatch. This IG is for FHIR version 4.0.1, while the package 'hl7.terminology.r5#6.5.0' is for FHIR version 5.0.0 (will ignore that and try to run anyway) (00:24.830 / 05:04.233, 2Gb) Ignore Dependency on Core FHIR hl7.fhir.r5.core#5.0.0, from package 'hl7.fhir.uv.extensions.r5#5.2.0' (00:00.014 / 05:04.247, 2Gb) Load Package hl7.fhir.uv.extensions.r5#5.2.0 Load Package hl7.terminology.r5#6.5.0 Load Package hl7.fhir.uv.extensions#current Installing hl7.fhir.uv.tools.r4#0.9.0 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.9.0  done. Load Package hl7.fhir.uv.tools.r4#0.9.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Cannot find or generate snapshot for base definition http://hl7.org/fhir/StructureDefinition/CanonicalResource from http://hl7.org/fhir/StructureDefinition/TestCases Initialization complete (00:26.339 / 05:30.587, 6Gb) Load IG (00:00.000 / 05:30.587, 6Gb) Load Content (00:00.003 / 05:30.590, 6Gb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.116 / 05:30.707, 6Gb) Process Loaded Resources (00:02.673 / 05:33.381, 6Gb) Publishing Content Failed: Error parsing /scratch/repo/input/resources/StructureDefinition-eom-tnm-primary-tumor-category: Error parsing JSON source: JSON syntax error - found Close expecting String at Line 143 (path=[//snapshot/element[]/element/constraint[]/sourceObservation.focus.resolve().ofType(Condition).code.where(memberOf('https://globalalliantinc.com/enhancing-oncology-model/ValueSet/eom-primary-breast-cancer-disorder-vs')).exists() implies Observation.value.where(memberOf('https://globalalliantinc.com/enhancing-oncology-model/ValueSet/eom-tnm-primary-tumor-category-breast-cancer-vs'))]) (00:01.912 / 05:35.293, 705Mb) (00:00.000 / 05:35.293, 705Mb) Use -? to get command line help (00:00.000 / 05:35.294, 705Mb) (00:00.000 / 05:35.294, 705Mb) Stack Dump (for debugging): (00:00.000 / 05:35.294, 705Mb) org.hl7.fhir.exceptions.FHIRException: Error parsing /scratch/repo/input/resources/StructureDefinition-eom-tnm-primary-tumor-category: Error parsing JSON source: JSON syntax error - found Close expecting String at Line 143 (path=[//snapshot/element[]/element/constraint[]/sourceObservation.focus.resolve().ofType(Condition).code.where(memberOf('https://globalalliantinc.com/enhancing-oncology-model/ValueSet/eom-primary-breast-cancer-disorder-vs')).exists() implies Observation.value.where(memberOf('https://globalalliantinc.com/enhancing-oncology-model/ValueSet/eom-tnm-primary-tumor-category-breast-cancer-vs'))]) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.loadResourceContent(PublisherIGLoader.java:4044) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.load(PublisherIGLoader.java:4014) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.loadConformance1(PublisherIGLoader.java:3992) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.load(PublisherIGLoader.java:2044) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:386) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:232) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1594) Caused by: java.io.IOException: Error parsing JSON source: JSON syntax error - found Close expecting String at Line 143 (path=[//snapshot/element[]/element/constraint[]/sourceObservation.focus.resolve().ofType(Condition).code.where(memberOf('https://globalalliantinc.com/enhancing-oncology-model/ValueSet/eom-primary-breast-cancer-disorder-vs')).exists() implies Observation.value.where(memberOf('https://globalalliantinc.com/enhancing-oncology-model/ValueSet/eom-tnm-primary-tumor-category-breast-cancer-vs'))]) at org.hl7.fhir.utilities.json.JsonTrackingParser$Lexer.error(JsonTrackingParser.java:209) at org.hl7.fhir.utilities.json.JsonTrackingParser$Lexer.consume(JsonTrackingParser.java:348) at org.hl7.fhir.utilities.json.JsonTrackingParser.parseProperty(JsonTrackingParser.java:632) at org.hl7.fhir.utilities.json.JsonTrackingParser.next(JsonTrackingParser.java:606) at org.hl7.fhir.utilities.json.JsonTrackingParser.next(JsonTrackingParser.java:583) at org.hl7.fhir.utilities.json.JsonTrackingParser.readObject(JsonTrackingParser.java:525) at org.hl7.fhir.utilities.json.JsonTrackingParser.readArray(JsonTrackingParser.java:539) at org.hl7.fhir.utilities.json.JsonTrackingParser.readObject(JsonTrackingParser.java:514) at org.hl7.fhir.utilities.json.JsonTrackingParser.readArray(JsonTrackingParser.java:539) at org.hl7.fhir.utilities.json.JsonTrackingParser.readObject(JsonTrackingParser.java:514) at org.hl7.fhir.utilities.json.JsonTrackingParser.readObject(JsonTrackingParser.java:466) at org.hl7.fhir.utilities.json.JsonTrackingParser.parse(JsonTrackingParser.java:441) at org.hl7.fhir.utilities.json.JsonTrackingParser.parse(JsonTrackingParser.java:417) at org.hl7.fhir.r4.formats.JsonParserBase.loadJson(JsonParserBase.java:220) at org.hl7.fhir.r4.formats.JsonParserBase.parse(JsonParserBase.java:130) at org.hl7.fhir.r4.formats.ParserBase.parse(ParserBase.java:58) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.parseContent(PublisherIGLoader.java:2681) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.parse(PublisherIGLoader.java:2662) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.loadResourceContent(PublisherIGLoader.java:4038) ... 6 more