INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/FHIR/hl7.fhir.r4.es --branch main repo DEBUG:root:Time to deadline 35879.998729 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.733523 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.56636 seconds added 114 packages in 24s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.6.7 -> 10.1.0 npm notice Changelog: npm notice Run `npm install -g npm@10.1.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/FHIR/hl7.fhir.r4.es/ -out /scratch/repo DEBUG:root:Time to deadline 35853.895354 seconds FHIR IG Publisher Version 1.4.6 (Git# c6b7d5a1f427). Built 2023-09-16T03:24:10.331Z (49 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/FHIR/hl7.fhir.r4.es/ -out /scratch/repo Start Clock @ Monday, September 18, 2023, 4:53:11 AM Coordinated Universal Time (2023-09-18T04:53:11Z) Build FHIR IG from /scratch/repo (00:00.020 / 00:00.020, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.023, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.025, 89Mb) Load Template from fhir.base.template#current (00:01.038 / 00:01.064, 87Mb) Installing fhir.base.template#current to the package cache Fetching: Installing fhir.base.template#current done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/repo/template/onLoad-ig-working.xml to /scratch/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/repo (00:02.774 / 00:03.839, 632Mb) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching: Installing hl7.fhir.r4.core#4.0.1 done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:10.937 / 00:14.776, 665Mb) Connect to Terminology Server at http://tx.fhir.org (00:00.001 / 00:14.777, 665Mb) Installing hl7.fhir.pubpack#0.1.5 to the package cache Fetching: Installing hl7.fhir.pubpack#0.1.5 done. Load Package hl7.fhir.pubpack#0.1.5 Installing hl7.fhir.xver-extensions#0.0.12 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.0.12 done. Load Package hl7.fhir.xver-extensions#0.0.12 Installing hl7.terminology.r4#5.3.0 to the package cache Fetching: Installing hl7.terminology.r4#5.3.0 done. Load Package hl7.terminology.r4#5.3.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#1.0.0 done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Dependency 'hl7.fhir.r4.examples' has no id, so can't be referred to in markdown in the IG (00:05.471 / 00:20.249, 596Mb) Installing hl7.fhir.r4.examples#4.0.1 to the package cache Fetching: Installing hl7.fhir.r4.examples#4.0.1 done. Load Package hl7.fhir.r4.examples#4.0.1 Installing hl7.fhir.uv.tools#current to the package cache Fetching: Installing hl7.fhir.uv.tools#current done. Version mismatch. This IG is version 4.0.1, while the IG 'hl7.fhir.uv.tools' is from version 5.0.0 (will try to run anyway) (00:16.830 / 00:37.079, 1Gb) Load Package hl7.fhir.uv.tools#current Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache Fetching: Installing hl7.fhir.r5.core#5.0.0 done. Initialization complete (00:06.311 / 00:43.391, 4Gb) Fetch http://hl7.org/fhir/langs/package-list.json for version check (00:00.001 / 00:43.393, 4Gb) Load Content (00:00.136 / 00:43.529, 4Gb) Publishing Content Failed: No Source directories to scan found (00:01.127 / 00:44.657, 4Gb) (00:00.000 / 00:44.657, 4Gb) Use -? to get command line help (00:00.000 / 00:44.657, 4Gb) (00:00.000 / 00:44.657, 4Gb) Stack Dump (for debugging): (00:00.000 / 00:44.657, 4Gb) org.hl7.fhir.exceptions.FHIRException: No Source directories to scan found at org.hl7.fhir.igtools.publisher.SimpleFetcher.scan(SimpleFetcher.java:313) at org.hl7.fhir.igtools.publisher.Publisher.loadResources(Publisher.java:5318) at org.hl7.fhir.igtools.publisher.Publisher.load(Publisher.java:4462) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1104) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:956) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:11982)