GenomeX Data Exchange FHIR IG
0.2.0 - draft

GenomeX Data Exchange FHIR IG, published by MITRE. This guide is not an authorized publication; it is the continuous build for version 0.2.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/CodeX-HL7-FHIR-Accelerator/GenomeX-DataExchange/ and changes regularly. See the Directory of published versions

: PrenatalGenomicStudyAnalysisFamilialHyperinsulinismPatientMale - XML Representation

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<Procedure xmlns="http://hl7.org/fhir">
  <id value="PrenatalGenomicStudyAnalysisFamilialHyperinsulinismPatientMale"/>
  <meta>
    <versionId value="1"/>
    <lastUpdated value="2024-10-02T03:41:29.698+00:00"/>
    <source value="#DEqMJP5Koyub2naR"/>
    <profile
             value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis"/>
  </meta>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Procedure PrenatalGenomicStudyAnalysisFamilialHyperinsulinismPatientMale</b></p><a name="PrenatalGenomicStudyAnalysisFamilialHyperinsulinismPatientMale"> </a><a name="hcPrenatalGenomicStudyAnalysisFamilialHyperinsulinismPatientMale"> </a><a name="PrenatalGenomicStudyAnalysisFamilialHyperinsulinismPatientMale-en-US"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">version: 1; Last updated: 2024-10-02 03:41:29+0000; </p><p style="margin-bottom: 0px">Information Source: #DEqMJP5Koyub2naR</p><p style="margin-bottom: 0px">Profile: <a href="http://hl7.org/fhir/uv/genomics-reporting/2024Jan/StructureDefinition-genomic-study-analysis.html">Genomic Study Analysis</a></p></div><p><b>org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genomic-source-class</b>: <span title="Codes:{http://loinc.org LA6683-2}">Germline</span></p><p><b>Genomic Study Analysis Genome Build</b>: <span title="Codes:{http://loinc.org LA14029-5}">GRCh37</span></p><blockquote><p><b>Genomic Study Analysis Regions</b></p><ul><li>description: Exons sequenced</li><li>studied: <span title="Codes:{http://www.ncbi.nlm.nih.gov/refseq NM_000352}">Exons: NM_000352:1-39</span></li></ul></blockquote><blockquote><p><b>Genomic Study Analysis Regions</b></p><ul><li>description: Genes studied</li><li>studied: <span title="Codes:{http://www.genenames.org HGNC:59}">ABCC8</span></li></ul></blockquote><p><b>Genomic Study Analysis Method Type</b>: <span title="Codes:{http://loinc.org 101397-8}">Copy number variation analysis in Blood or Tissue by Sequencing</span></p><p><b>Genomic Study Analysis Method Type</b>: <span title="Codes:{http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs sequence-analysis-of-select-exons}">Sequence analysis of select exons</span></p><p><b>status</b>: Completed</p><p><b>subject</b>: <a href="Patient-PatientMale.html">Higado Sobreviviente (official) Male, DoB: 1996-05-13 ( Patient ID: fec6172efdca41b4a13341e75cb62e0f (use: official, ))</a></p><p><b>performed</b>: 2024-07-09</p><p><b>note</b>: familial hyperinsulinism, ABCC8-related - ABCC8. Autosomal recessive inheritance. sequencing with copy number analysis. Detection rate: Northern European &gt;99%, No disease-causing mutations were detected in any other gene tested for familial hyperinsulinism, ABCC8-related, Report content approved by PractitionerJane Smith, PhD, FACMG, CGMB on Jul 9, 2024, Report content approved by Krista Moyer, MGC on Jul 9, 2024</p></div>
  </text>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genomic-source-class">
    <valueCodeableConcept>
      <coding>
        <system value="http://loinc.org"/>
        <code value="LA6683-2"/>
        <display value="Germline"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genome-build">
    <valueCodeableConcept>
      <coding>
        <system value="http://loinc.org"/>
        <code value="LA14029-5"/>
        <display value="GRCh37"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-regions">
    <extension url="description">
      <valueString value="Exons sequenced"/>
    </extension>
    <extension url="studied">
      <valueCodeableConcept>
        <coding>
          <system value="http://www.ncbi.nlm.nih.gov/refseq"/>
          <code value="NM_000352"/>
          <display value="Exons: NM_000352:1-39"/>
        </coding>
      </valueCodeableConcept>
    </extension>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-regions">
    <extension url="description">
      <valueString value="Genes studied"/>
    </extension>
    <extension url="studied">
      <valueCodeableConcept>
        <coding>
          <system value="http://www.genenames.org"/>
          <code value="HGNC:59"/>
          <display value="ABCC8"/>
        </coding>
      </valueCodeableConcept>
    </extension>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-method-type">
    <valueCodeableConcept>
      <coding>
        <system value="http://loinc.org"/>
        <code value="101397-8"/>
        <display
                 value="Copy number variation analysis in Blood or Tissue by Sequencing"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-method-type">
    <valueCodeableConcept>
      <coding>
        <system
                value="http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs"/>
        <code value="sequence-analysis-of-select-exons"/>
        <display value="Sequence analysis of select exons"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <status value="completed"/>
  <subject>🔗 
    <reference value="Patient/PatientMale"/>
  </subject>
  <performedDateTime value="2024-07-09"/>
  <note>
    <text
          value="familial hyperinsulinism, ABCC8-related - ABCC8. Autosomal recessive inheritance. sequencing with copy number analysis. Detection rate: Northern European &gt;99%"/>
  </note>
  <note>
    <text
          value="No disease-causing mutations were detected in any other gene tested for familial hyperinsulinism, ABCC8-related"/>
  </note>
  <note>
    <text
          value="Report content approved by PractitionerJane Smith, PhD, FACMG, CGMB on Jul 9, 2024"/>
  </note>
  <note>
    <text
          value="Report content approved by Krista Moyer, MGC on Jul 9, 2024"/>
  </note>
</Procedure>