GenomeX Data Exchange FHIR IG
0.2.0 - draft

GenomeX Data Exchange FHIR IG, published by MITRE. This guide is not an authorized publication; it is the continuous build for version 0.2.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/CodeX-HL7-FHIR-Accelerator/GenomeX-DataExchange/ and changes regularly. See the Directory of published versions

: PrenatalGenomicStudyAnalysisFactorXiDeficiencyPatientMale - XML Representation

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<Procedure xmlns="http://hl7.org/fhir">
  <id value="PrenatalGenomicStudyAnalysisFactorXiDeficiencyPatientMale"/>
  <meta>
    <versionId value="1"/>
    <lastUpdated value="2024-10-02T03:41:34.767+00:00"/>
    <source value="#JVN7S7CW0og8nwN0"/>
    <profile
             value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis"/>
  </meta>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Procedure PrenatalGenomicStudyAnalysisFactorXiDeficiencyPatientMale</b></p><a name="PrenatalGenomicStudyAnalysisFactorXiDeficiencyPatientMale"> </a><a name="hcPrenatalGenomicStudyAnalysisFactorXiDeficiencyPatientMale"> </a><a name="PrenatalGenomicStudyAnalysisFactorXiDeficiencyPatientMale-en-US"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">version: 1; Last updated: 2024-10-02 03:41:34+0000; </p><p style="margin-bottom: 0px">Information Source: #JVN7S7CW0og8nwN0</p><p style="margin-bottom: 0px">Profile: <a href="http://hl7.org/fhir/uv/genomics-reporting/2024Jan/StructureDefinition-genomic-study-analysis.html">Genomic Study Analysis</a></p></div><p><b>org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genomic-source-class</b>: <span title="Codes:{http://loinc.org LA6683-2}">Germline</span></p><p><b>Genomic Study Analysis Genome Build</b>: <span title="Codes:{http://loinc.org LA14029-5}">GRCh37</span></p><blockquote><p><b>Genomic Study Analysis Regions</b></p><ul><li>description: Exons sequenced</li><li>studied: <span title="Codes:{http://www.ncbi.nlm.nih.gov/refseq NM_000128}">Exons: NM_000128:2-15</span></li></ul></blockquote><blockquote><p><b>Genomic Study Analysis Regions</b></p><ul><li>description: Genes studied</li><li>studied: <span title="Codes:{http://www.genenames.org HGNC:3529}">F11</span></li></ul></blockquote><p><b>Genomic Study Analysis Method Type</b>: <span title="Codes:{http://loinc.org 101397-8}">Copy number variation analysis in Blood or Tissue by Sequencing</span></p><p><b>Genomic Study Analysis Method Type</b>: <span title="Codes:{http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs sequence-analysis-of-select-exons}">Sequence analysis of select exons</span></p><p><b>status</b>: Completed</p><p><b>subject</b>: <a href="Patient-PatientMale.html">Higado Sobreviviente (official) Male, DoB: 1996-05-13 ( Patient ID: fec6172efdca41b4a13341e75cb62e0f (use: official, ))</a></p><p><b>performed</b>: 2024-06-26</p><p><b>note</b>: factor XI deficiency - F11. Autosomal recessive inheritance. sequencing with copy number analysis. Detection rate: Northern European &gt;99%, No disease-causing mutations were detected in any other gene tested for factor XI deficiency, Report content approved by PractitionerJane Smith, PhD, FACMG, CGMB on Jun 26, 2024, Report content approved by Krista Moyer, MGC on Jun 26, 2024</p></div>
  </text>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genomic-source-class">
    <valueCodeableConcept>
      <coding>
        <system value="http://loinc.org"/>
        <code value="LA6683-2"/>
        <display value="Germline"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genome-build">
    <valueCodeableConcept>
      <coding>
        <system value="http://loinc.org"/>
        <code value="LA14029-5"/>
        <display value="GRCh37"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-regions">
    <extension url="description">
      <valueString value="Exons sequenced"/>
    </extension>
    <extension url="studied">
      <valueCodeableConcept>
        <coding>
          <system value="http://www.ncbi.nlm.nih.gov/refseq"/>
          <code value="NM_000128"/>
          <display value="Exons: NM_000128:2-15"/>
        </coding>
      </valueCodeableConcept>
    </extension>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-regions">
    <extension url="description">
      <valueString value="Genes studied"/>
    </extension>
    <extension url="studied">
      <valueCodeableConcept>
        <coding>
          <system value="http://www.genenames.org"/>
          <code value="HGNC:3529"/>
          <display value="F11"/>
        </coding>
      </valueCodeableConcept>
    </extension>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-method-type">
    <valueCodeableConcept>
      <coding>
        <system value="http://loinc.org"/>
        <code value="101397-8"/>
        <display
                 value="Copy number variation analysis in Blood or Tissue by Sequencing"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-method-type">
    <valueCodeableConcept>
      <coding>
        <system
                value="http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs"/>
        <code value="sequence-analysis-of-select-exons"/>
        <display value="Sequence analysis of select exons"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <status value="completed"/>
  <subject>🔗 
    <reference value="Patient/PatientMale"/>
  </subject>
  <performedDateTime value="2024-06-26"/>
  <note>
    <text
          value="factor XI deficiency - F11. Autosomal recessive inheritance. sequencing with copy number analysis. Detection rate: Northern European &gt;99%"/>
  </note>
  <note>
    <text
          value="No disease-causing mutations were detected in any other gene tested for factor XI deficiency"/>
  </note>
  <note>
    <text
          value="Report content approved by PractitionerJane Smith, PhD, FACMG, CGMB on Jun 26, 2024"/>
  </note>
  <note>
    <text
          value="Report content approved by Krista Moyer, MGC on Jun 26, 2024"/>
  </note>
</Procedure>