<?xml version="1.0" encoding="UTF-8"?>

<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="gene-sequence-origin"/>
  <meta>
    <lastUpdated value="2026-06-23T16:20:19.822+00:00"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml">
      <p class="res-header-id">
        <b>Generated Narrative: CodeSystem gene-sequence-origin</b>
      </p>
      <a name="gene-sequence-origin"> </a>
      <a name="hcgene-sequence-origin"> </a>
      <p>This case-sensitive code system 
        <code>http://hl7.org/fhir/gene-sequence-origin</code> defines the following codes:
      </p>
      <table class="codes">
        <tr>
          <td style="white-space:nowrap">
            <b>Code</b>
          </td>
          <td>
            <b>Display</b>
          </td>
          <td>
            <b>Definition</b>
          </td>
        </tr>
        <tr>
          <td style="white-space:nowrap">human
            <a name="gene-sequence-origin-human"> </a>
          </td>
          <td>Human</td>
          <td>Human-origin gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">humanised-mouse
            <a name="gene-sequence-origin-humanised-mouse"> </a>
          </td>
          <td>Humanised mouse</td>
          <td>Humanised mouse-origin gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">humanised-rat
            <a name="gene-sequence-origin-humanised-rat"> </a>
          </td>
          <td>Humanised rat</td>
          <td>Humanised rat-origin gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">chimeric-mouse-human
            <a name="gene-sequence-origin-chimeric-mouse-human"> </a>
          </td>
          <td>Chimeric mouse-human</td>
          <td>Chimeric mouse-human gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">chimeric-rat-human
            <a name="gene-sequence-origin-chimeric-rat-human"> </a>
          </td>
          <td>Chimeric rat-human</td>
          <td>Chimeric rat-human gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">mouse
            <a name="gene-sequence-origin-mouse"> </a>
          </td>
          <td>Mouse</td>
          <td>Mouse-origin gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">rat
            <a name="gene-sequence-origin-rat"> </a>
          </td>
          <td>Rat</td>
          <td>Rat-origin gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">rabbit
            <a name="gene-sequence-origin-rabbit"> </a>
          </td>
          <td>Rabbit</td>
          <td>Rabbit-origin gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">bovine
            <a name="gene-sequence-origin-bovine"> </a>
          </td>
          <td>Bovine</td>
          <td>Bovine-origin gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">porcine
            <a name="gene-sequence-origin-porcine"> </a>
          </td>
          <td>Porcine</td>
          <td>Porcine-origin gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">bacterial
            <a name="gene-sequence-origin-bacterial"> </a>
          </td>
          <td>Bacterial</td>
          <td>Bacterial-origin gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">viral
            <a name="gene-sequence-origin-viral"> </a>
          </td>
          <td>Viral</td>
          <td>Viral-origin gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">fungal
            <a name="gene-sequence-origin-fungal"> </a>
          </td>
          <td>Fungal</td>
          <td>Fungal-origin gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">plant
            <a name="gene-sequence-origin-plant"> </a>
          </td>
          <td>Plant</td>
          <td>Plant-origin gene sequence.</td>
        </tr>
        <tr>
          <td style="white-space:nowrap">synthetic
            <a name="gene-sequence-origin-synthetic"> </a>
          </td>
          <td>Synthetic</td>
          <td>Synthetic gene sequence (not from a natural organism).</td>
        </tr>
      </table>
    </div>
  </text>
  <extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
    <valueCode value="brr"/>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status">
    <valueCode value="informative"/>
  </extension>
  <extension url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
    <valueInteger value="1"/>
  </extension>
  <url value="http://hl7.org/fhir/gene-sequence-origin"/>
  <version value="6.0.0-ballot4"/>
  <name value="GeneSequenceOriginExample"/>
  <title value="Gene Sequence Origin"/>
  <status value="active"/>
  <experimental value="true"/>
  <date value="2026-06-23"/>
  <publisher value="HL7 (FHIR Project)"/>
  <contact>
    <telecom>
      <system value="url"/>
      <value value="http://hl7.org/fhir"/>
    </telecom>
    <telecom>
      <system value="email"/>
      <value value="fhir@lists.hl7.org"/>
    </telecom>
  </contact>
  <description value="The species or lineage from which a gene sequence originates, used e.g. for recombinant biologics."/>
  <jurisdiction>
    <coding>
      <system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
      <code value="001"/>
      <display value="World"/>
    </coding>
  </jurisdiction>
  <caseSensitive value="true"/>
  <valueSet value="http://hl7.org/fhir/ValueSet/gene-sequence-origin"/>
  <content value="complete"/>
  <concept>
    <code value="human"/>
    <display value="Human"/>
    <definition value="Human-origin gene sequence."/>
  </concept>
  <concept>
    <code value="humanised-mouse"/>
    <display value="Humanised mouse"/>
    <definition value="Humanised mouse-origin gene sequence."/>
  </concept>
  <concept>
    <code value="humanised-rat"/>
    <display value="Humanised rat"/>
    <definition value="Humanised rat-origin gene sequence."/>
  </concept>
  <concept>
    <code value="chimeric-mouse-human"/>
    <display value="Chimeric mouse-human"/>
    <definition value="Chimeric mouse-human gene sequence."/>
  </concept>
  <concept>
    <code value="chimeric-rat-human"/>
    <display value="Chimeric rat-human"/>
    <definition value="Chimeric rat-human gene sequence."/>
  </concept>
  <concept>
    <code value="mouse"/>
    <display value="Mouse"/>
    <definition value="Mouse-origin gene sequence."/>
  </concept>
  <concept>
    <code value="rat"/>
    <display value="Rat"/>
    <definition value="Rat-origin gene sequence."/>
  </concept>
  <concept>
    <code value="rabbit"/>
    <display value="Rabbit"/>
    <definition value="Rabbit-origin gene sequence."/>
  </concept>
  <concept>
    <code value="bovine"/>
    <display value="Bovine"/>
    <definition value="Bovine-origin gene sequence."/>
  </concept>
  <concept>
    <code value="porcine"/>
    <display value="Porcine"/>
    <definition value="Porcine-origin gene sequence."/>
  </concept>
  <concept>
    <code value="bacterial"/>
    <display value="Bacterial"/>
    <definition value="Bacterial-origin gene sequence."/>
  </concept>
  <concept>
    <code value="viral"/>
    <display value="Viral"/>
    <definition value="Viral-origin gene sequence."/>
  </concept>
  <concept>
    <code value="fungal"/>
    <display value="Fungal"/>
    <definition value="Fungal-origin gene sequence."/>
  </concept>
  <concept>
    <code value="plant"/>
    <display value="Plant"/>
    <definition value="Plant-origin gene sequence."/>
  </concept>
  <concept>
    <code value="synthetic"/>
    <display value="Synthetic"/>
    <definition value="Synthetic gene sequence (not from a natural organism)."/>
  </concept>
</CodeSystem>