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Example CodeSystem/gene-sequence-origin (Turtle)

Responsible Owner: Biomedical Research and Regulation Work GroupStandards Status: Informative

Raw Turtle (+ also see Turtle/RDF Format Specification)

Definition for Code SystemGeneSequenceOriginExample

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/CodeSystem/gene-sequence-origin> a fhir:CodeSystem ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "gene-sequence-origin"] ; # 
  fhir:meta [
     fhir:lastUpdated [ fhir:v "2026-06-23T16:20:19.822+00:00"^^xsd:dateTime ]
  ] ; # 
  fhir:text [
     fhir:status [ fhir:v "generated" ] ;
     fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem gene-sequence-origin</b></p><a name=\"gene-sequence-origin\"> </a><a name=\"hcgene-sequence-origin\"> </a><p>This case-sensitive code system <code>http://hl7.org/fhir/gene-sequence-origin</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">human<a name=\"gene-sequence-origin-human\"> </a></td><td>Human</td><td>Human-origin gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">humanised-mouse<a name=\"gene-sequence-origin-humanised-mouse\"> </a></td><td>Humanised mouse</td><td>Humanised mouse-origin gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">humanised-rat<a name=\"gene-sequence-origin-humanised-rat\"> </a></td><td>Humanised rat</td><td>Humanised rat-origin gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">chimeric-mouse-human<a name=\"gene-sequence-origin-chimeric-mouse-human\"> </a></td><td>Chimeric mouse-human</td><td>Chimeric mouse-human gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">chimeric-rat-human<a name=\"gene-sequence-origin-chimeric-rat-human\"> </a></td><td>Chimeric rat-human</td><td>Chimeric rat-human gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">mouse<a name=\"gene-sequence-origin-mouse\"> </a></td><td>Mouse</td><td>Mouse-origin gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">rat<a name=\"gene-sequence-origin-rat\"> </a></td><td>Rat</td><td>Rat-origin gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">rabbit<a name=\"gene-sequence-origin-rabbit\"> </a></td><td>Rabbit</td><td>Rabbit-origin gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">bovine<a name=\"gene-sequence-origin-bovine\"> </a></td><td>Bovine</td><td>Bovine-origin gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">porcine<a name=\"gene-sequence-origin-porcine\"> </a></td><td>Porcine</td><td>Porcine-origin gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">bacterial<a name=\"gene-sequence-origin-bacterial\"> </a></td><td>Bacterial</td><td>Bacterial-origin gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">viral<a name=\"gene-sequence-origin-viral\"> </a></td><td>Viral</td><td>Viral-origin gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">fungal<a name=\"gene-sequence-origin-fungal\"> </a></td><td>Fungal</td><td>Fungal-origin gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">plant<a name=\"gene-sequence-origin-plant\"> </a></td><td>Plant</td><td>Plant-origin gene sequence.</td></tr><tr><td style=\"white-space:nowrap\">synthetic<a name=\"gene-sequence-origin-synthetic\"> </a></td><td>Synthetic</td><td>Synthetic gene sequence (not from a natural organism).</td></tr></table></div>"^^rdf:XMLLiteral ]
  ] ; # 
  fhir:extension ( [
     fhir:url [
       fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg"^^xsd:anyURI ;
       fhir:l <http://hl7.org/fhir/StructureDefinition/structuredefinition-wg>
     ] ;
     fhir:value [
       a fhir:Code ;
       fhir:v "brr"
     ]
  ] [
     fhir:url [
       fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status"^^xsd:anyURI ;
       fhir:l <http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status>
     ] ;
     fhir:value [
       a fhir:Code ;
       fhir:v "informative"
     ]
  ] [
     fhir:url [
       fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm"^^xsd:anyURI ;
       fhir:l <http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm>
     ] ;
     fhir:value [
       a fhir:Integer ;
       fhir:v 1
     ]
  ] ) ; # 
  fhir:url [
     fhir:v "http://hl7.org/fhir/gene-sequence-origin"^^xsd:anyURI ;
     fhir:l <http://hl7.org/fhir/gene-sequence-origin>
  ] ; # 
  fhir:version [ fhir:v "6.0.0-ballot4"] ; # 
  fhir:name [ fhir:v "GeneSequenceOriginExample"] ; # 
  fhir:title [ fhir:v "Gene Sequence Origin"] ; # 
  fhir:status [ fhir:v "active"] ; # 
  fhir:experimental [ fhir:v true] ; # 
  fhir:date [ fhir:v "2026-06-23"^^xsd:date] ; # 
  fhir:publisher [ fhir:v "HL7 (FHIR Project)"] ; # 
  fhir:contact ( [
     fhir:telecom ( [
       fhir:system [ fhir:v "url" ] ;
       fhir:value [ fhir:v "http://hl7.org/fhir" ]
     ] [
       fhir:system [ fhir:v "email" ] ;
       fhir:value [ fhir:v "fhir@lists.hl7.org" ]
     ] )
  ] ) ; # 
  fhir:description [ fhir:v "The species or lineage from which a gene sequence originates, used e.g. for recombinant biologics."] ; # 
  fhir:jurisdiction ( [
     fhir:coding ( [
       fhir:system [
         fhir:v "http://unstats.un.org/unsd/methods/m49/m49.htm"^^xsd:anyURI ;
         fhir:l <http://unstats.un.org/unsd/methods/m49/m49.htm>
       ] ;
       fhir:code [ fhir:v "001" ] ;
       fhir:display [ fhir:v "World" ]
     ] )
  ] ) ; # 
  fhir:caseSensitive [ fhir:v true] ; # 
  fhir:valueSet [
     fhir:v "http://hl7.org/fhir/ValueSet/gene-sequence-origin"^^xsd:anyURI ;
     fhir:l <http://hl7.org/fhir/ValueSet/gene-sequence-origin>
  ] ; # 
  fhir:hierarchyMeaning [] ; # 
  fhir:content [ fhir:v "complete"] ; # 
  fhir:concept ( [
     fhir:code [ fhir:v "human" ] ;
     fhir:display [ fhir:v "Human" ] ;
     fhir:definition [ fhir:v "Human-origin gene sequence." ]
  ] [
     fhir:code [ fhir:v "humanised-mouse" ] ;
     fhir:display [ fhir:v "Humanised mouse" ] ;
     fhir:definition [ fhir:v "Humanised mouse-origin gene sequence." ]
  ] [
     fhir:code [ fhir:v "humanised-rat" ] ;
     fhir:display [ fhir:v "Humanised rat" ] ;
     fhir:definition [ fhir:v "Humanised rat-origin gene sequence." ]
  ] [
     fhir:code [ fhir:v "chimeric-mouse-human" ] ;
     fhir:display [ fhir:v "Chimeric mouse-human" ] ;
     fhir:definition [ fhir:v "Chimeric mouse-human gene sequence." ]
  ] [
     fhir:code [ fhir:v "chimeric-rat-human" ] ;
     fhir:display [ fhir:v "Chimeric rat-human" ] ;
     fhir:definition [ fhir:v "Chimeric rat-human gene sequence." ]
  ] [
     fhir:code [ fhir:v "mouse" ] ;
     fhir:display [ fhir:v "Mouse" ] ;
     fhir:definition [ fhir:v "Mouse-origin gene sequence." ]
  ] [
     fhir:code [ fhir:v "rat" ] ;
     fhir:display [ fhir:v "Rat" ] ;
     fhir:definition [ fhir:v "Rat-origin gene sequence." ]
  ] [
     fhir:code [ fhir:v "rabbit" ] ;
     fhir:display [ fhir:v "Rabbit" ] ;
     fhir:definition [ fhir:v "Rabbit-origin gene sequence." ]
  ] [
     fhir:code [ fhir:v "bovine" ] ;
     fhir:display [ fhir:v "Bovine" ] ;
     fhir:definition [ fhir:v "Bovine-origin gene sequence." ]
  ] [
     fhir:code [ fhir:v "porcine" ] ;
     fhir:display [ fhir:v "Porcine" ] ;
     fhir:definition [ fhir:v "Porcine-origin gene sequence." ]
  ] [
     fhir:code [ fhir:v "bacterial" ] ;
     fhir:display [ fhir:v "Bacterial" ] ;
     fhir:definition [ fhir:v "Bacterial-origin gene sequence." ]
  ] [
     fhir:code [ fhir:v "viral" ] ;
     fhir:display [ fhir:v "Viral" ] ;
     fhir:definition [ fhir:v "Viral-origin gene sequence." ]
  ] [
     fhir:code [ fhir:v "fungal" ] ;
     fhir:display [ fhir:v "Fungal" ] ;
     fhir:definition [ fhir:v "Fungal-origin gene sequence." ]
  ] [
     fhir:code [ fhir:v "plant" ] ;
     fhir:display [ fhir:v "Plant" ] ;
     fhir:definition [ fhir:v "Plant-origin gene sequence." ]
  ] [
     fhir:code [ fhir:v "synthetic" ] ;
     fhir:display [ fhir:v "Synthetic" ] ;
     fhir:definition [ fhir:v "Synthetic gene sequence (not from a natural organism)." ]
  ] ) . # 

# -------------------------------------------------------------------------------------


Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.