Liver biopsy specimen

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Specimen/liver-biopsy> a fhir:Specimen ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "liver-biopsy"] ; # 
  fhir:identifier ( [
     fhir:system [ fhir:v "http://lab.acme.org/specimens/2024"^^xsd:anyURI ] ;
     fhir:value [ fhir:v "LB-2024-001" ]
  ] [
     fhir:type [
       fhir:coding ( [
         fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0203"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "ACSN" ] ;
         fhir:display [ fhir:v "Accession ID" ]
       ] )
     ] ;
     fhir:system [ fhir:v "http://pathology.acme.org/accession"^^xsd:anyURI ] ;
     fhir:value [ fhir:v "PB24-00789" ]
  ] ) ; # 
  fhir:accessionIdentifier [
     fhir:system [ fhir:v "http://pathology.acme.org/accession"^^xsd:anyURI ] ;
     fhir:value [ fhir:v "PB24-00789" ]
  ] ; # 
  fhir:status [ fhir:v "available"] ; # 
  fhir:type [
     fhir:coding ( [
       a sct:119376003 ;
       fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "119376003" ] ;
       fhir:display [ fhir:v "Tissue specimen" ]
     ] )
  ] ; # 
  fhir:subject [
     fhir:link <http://hl7.org/fhir/Patient/example> ;
     fhir:reference [ fhir:v "Patient/example" ] ;
     fhir:display [ fhir:v "Peter Patient" ]
  ] ; # 
  fhir:receivedTime [ fhir:v "2024-03-15T10:30:00Z"^^xsd:dateTime] ; # 
  fhir:request ( [
     fhir:link <http://hl7.org/fhir/ServiceRequest/liver-biopsy-request> ;
     fhir:reference [ fhir:v "ServiceRequest/liver-biopsy-request" ]
  ] ) ; # 
  fhir:collection [
     fhir:collector [
       fhir:link <http://hl7.org/fhir/Practitioner/gastroenterologist> ;
       fhir:reference [ fhir:v "Practitioner/gastroenterologist" ]
     ] ;
     fhir:collected [
       a fhir:dateTime ;
       fhir:v "2024-03-15T09:45:00Z"^^xsd:dateTime
     ] ;
     fhir:quantity [
       fhir:value [ fhir:v 1.5 ] ;
       fhir:unit [ fhir:v "cm" ] ;
       fhir:system [ fhir:v "http://unitsofmeasure.org"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "cm" ]
     ] ;
     fhir:method [
       fhir:coding ( [
         a sct:129314006 ;
         fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "129314006" ] ;
         fhir:display [ fhir:v "Biopsy - action" ]
       ] )
     ] ;
     fhir:bodySite [
       fhir:concept [
         fhir:coding ( [
           a sct:10200004 ;
           fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
           fhir:code [ fhir:v "10200004" ] ;
           fhir:display [ fhir:v "Liver structure" ]
         ] )
       ]
     ] ;
     fhir:procedure [ ]
  ] ; # 
  fhir:processing ( [
     fhir:description [ fhir:v "Fixed in 10% neutral buffered formalin" ] ;
     fhir:additive ( [
       fhir:concept [
         fhir:coding ( [
           fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0371"^^xsd:anyURI ] ;
           fhir:code [ fhir:v "F10" ] ;
           fhir:display [ fhir:v "10% Formalin" ]
         ] )
       ]
     ] ) ;
     fhir:time [
       a fhir:dateTime ;
       fhir:v "2024-03-15T10:45:00Z"^^xsd:dateTime
     ]
  ] ) ; # 
  fhir:container ( [
     fhir:device [
       fhir:reference [ ]
     ] ;
     fhir:specimenQuantity [
       fhir:value [ fhir:v "1"^^xsd:decimal ] ;
       fhir:unit [ fhir:v "specimen" ]
     ]
  ] ) ; # 
  fhir:condition ( [
     fhir:coding ( [
       a sct:48883003 ;
       fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "48883003" ]
     ] )
  ] ) ; # 
  fhir:note ( [
     fhir:text [ fhir:v "Core biopsy specimen obtained for evaluation of hepatic steatosis and fibrosis. Adequate tissue for histopathological assessment." ]
  ] ) . # 

<http://hl7.org/fhir/Patient/example> a fhir:Patient .

<http://hl7.org/fhir/ServiceRequest/liver-biopsy-request> a fhir:ServiceRequest .

<http://hl7.org/fhir/Practitioner/gastroenterologist> a fhir:Practitioner .

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