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Orders and Observations Work Group | Maturity Level: N/A | Standards Status: Informative | Compartments: Device, Patient, Practitioner |
ShEx statement for specimen
PREFIX fhir: <http://hl7.org/fhir/> PREFIX fhirvs: <http://hl7.org/fhir/ValueSet/> PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> IMPORT <code.shex> IMPORT <Group.shex> IMPORT <Device.shex> IMPORT <string.shex> IMPORT <Period.shex> IMPORT <Patient.shex> IMPORT <Location.shex> IMPORT <dateTime.shex> IMPORT <Duration.shex> IMPORT <Quantity.shex> IMPORT <Reference.shex> IMPORT <Substance.shex> IMPORT <Procedure.shex> IMPORT <Identifier.shex> IMPORT <Annotation.shex> IMPORT <Practitioner.shex> IMPORT <Organization.shex> IMPORT <RelatedPerson.shex> IMPORT <DomainResource.shex> IMPORT <ServiceRequest.shex> IMPORT <CodeableConcept.shex> IMPORT <BackboneElement.shex> IMPORT <PractitionerRole.shex> IMPORT <CodeableReference.shex> IMPORT <BiologicallyDerivedProduct.shex> start=@<Specimen> AND {fhir:nodeRole [fhir:treeRoot]} # Sample for analysis <Specimen> EXTENDS @<DomainResource> CLOSED { a [fhir:Specimen]?;fhir:nodeRole [fhir:treeRoot]?; fhir:identifier @<OneOrMore_Identifier>?; # External Identifier fhir:accessionIdentifier @<Identifier>?; # Identifier assigned by the lab fhir:status @<code> AND {fhir:v @fhirvs:specimen-status}?; # available | unavailable | # unsatisfactory | entered-in-error fhir:type @<CodeableConcept>?; # Kind of material that forms the # specimen fhir:subject @<Reference> AND {fhir:link @<BiologicallyDerivedProduct> OR @<Device> OR @<Group> OR @<Location> OR @<Patient> OR @<Substance> ? }?; # Where the specimen came from. This # may be from patient(s), from a # location (e.g., the source of an # environmental sample), or a # sampling of a substance, a # biologically-derived product, or a # device fhir:receivedTime @<dateTime>?; # The time when specimen is received # by the testing laboratory fhir:parent @<OneOrMore_Reference_Specimen>?; # Specimen from which this specimen # originated fhir:request @<OneOrMore_Reference_ServiceRequest>?; # Why the specimen was collected fhir:combined @<code> AND {fhir:v @fhirvs:specimen-combined}?; # grouped | pooled fhir:role @<OneOrMore_CodeableConcept>?; # The role the specimen serves fhir:feature @<OneOrMore_Specimen.feature>?; # The physical feature of a specimen fhir:collection @<Specimen.collection>?; # Collection details fhir:processing @<OneOrMore_Specimen.processing>?; # Processing and processing step # details fhir:container @<OneOrMore_Specimen.container>?; # Direct container of specimen # (tube/slide, etc.) fhir:condition @<OneOrMore_CodeableConcept>?; # State of the specimen fhir:note @<OneOrMore_Annotation>?; # Comments } # Processing and processing step details <Specimen.processing> EXTENDS @<BackboneElement> CLOSED { fhir:description @<string>?; # Textual description of procedure fhir:method @<CodeableConcept>?; # Indicates the treatment step # applied to the specimen fhir:performer @<Reference> AND {fhir:link @<Patient> OR @<Practitioner> OR @<PractitionerRole> OR @<RelatedPerson> ? }?; # Entity processing specimen fhir:device @<Reference> AND {fhir:link @<Device> ? }?; # Device used to process the specimen fhir:additive @<OneOrMore_Reference_Substance>?; # Material used in the processing # step fhir:time @<dateTime> OR @<Period> OR @<Duration> ?; # Date and time of specimen # processing } # Collection details <Specimen.collection> EXTENDS @<BackboneElement> CLOSED { fhir:collector @<Reference> AND {fhir:link @<Organization> OR @<Patient> OR @<Practitioner> OR @<PractitionerRole> OR @<RelatedPerson> ? }?; # Who collected the specimen fhir:collected @<dateTime> OR @<Period> ?; # Collection time fhir:duration @<Duration>?; # How long it took to collect # specimen fhir:quantity @<Quantity>?; # The quantity of specimen collected fhir:method @<CodeableConcept>?; # Technique used to perform # collection fhir:device @<CodeableReference>?; # Device used to perform collection fhir:procedure @<Reference> AND {fhir:link @<Procedure> ? }?; # The procedure that collects the # specimen fhir:bodySite @<CodeableReference>?; # Anatomical collection site fhir:fastingStatus @<CodeableConcept> OR @<Duration> ?; # Whether or how long patient # abstained from food and/or drink } # Direct container of specimen (tube/slide, etc.) <Specimen.container> EXTENDS @<BackboneElement> CLOSED { fhir:device @<Reference> AND {fhir:link @<Device> ? }; # Device resource for the container fhir:specimenQuantity @<Quantity>?; # Quantity of specimen within # container } # The physical feature of a specimen <Specimen.feature> EXTENDS @<BackboneElement> CLOSED { fhir:type @<CodeableConcept>; # Highlighted feature fhir:description @<string>; # Information about the feature } #---------------------- Cardinality Types (OneOrMore) ------------------- <OneOrMore_Identifier> CLOSED { rdf:first @<Identifier> ; rdf:rest [rdf:nil] OR @<OneOrMore_Identifier> } <OneOrMore_Reference_Specimen> CLOSED { rdf:first @<Reference> AND {fhir:link @<Specimen> } ; rdf:rest [rdf:nil] OR @<OneOrMore_Reference_Specimen> } <OneOrMore_Reference_ServiceRequest> CLOSED { rdf:first @<Reference> AND {fhir:link @<ServiceRequest> } ; rdf:rest [rdf:nil] OR @<OneOrMore_Reference_ServiceRequest> } <OneOrMore_CodeableConcept> CLOSED { rdf:first @<CodeableConcept> ; rdf:rest [rdf:nil] OR @<OneOrMore_CodeableConcept> } <OneOrMore_Specimen.feature> CLOSED { rdf:first @<Specimen.feature> ; rdf:rest [rdf:nil] OR @<OneOrMore_Specimen.feature> } <OneOrMore_Specimen.processing> CLOSED { rdf:first @<Specimen.processing> ; rdf:rest [rdf:nil] OR @<OneOrMore_Specimen.processing> } <OneOrMore_Specimen.container> CLOSED { rdf:first @<Specimen.container> ; rdf:rest [rdf:nil] OR @<OneOrMore_Specimen.container> } <OneOrMore_Annotation> CLOSED { rdf:first @<Annotation> ; rdf:rest [rdf:nil] OR @<OneOrMore_Annotation> } <OneOrMore_Reference_Substance> CLOSED { rdf:first @<Reference> AND {fhir:link @<Substance> } ; rdf:rest [rdf:nil] OR @<OneOrMore_Reference_Substance> } #---------------------- Value Sets ------------------------ # Codes providing the combined status of a specimen. fhirvs:specimen-combined ["grouped" "pooled"] # Codes providing the status/availability of a specimen. fhirvs:specimen-status ["available" "unavailable" "unsatisfactory" "entered-in-error"]
Usage note: every effort has been made to ensure that the ShEx files are correct and useful, but they are not a normative part of the specification.
FHIR ®© HL7.org 2011+. FHIR R6 hl7.fhir.core#6.0.0-ballot2 generated on Tue, Nov 12, 2024 03:29+0000.
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