This is the Continuous Integration Build of FHIR (will be incorrect/inconsistent at times).
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Orders and Observations Work Group | Maturity Level: N/A | Standards Status: Informative | Compartments: Device, Group, Patient, Practitioner |
Raw XML (canonical form + also see XML Format Specification)
Bacterial Isolate from Stool sample (id = "isolate")
<?xml version="1.0" encoding="UTF-8"?> <Specimen xmlns="http://hl7.org/fhir"> <id value="isolate"/> <contained> <Specimen> <id value="stool"/> <identifier> <type> <coding> <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/> <code value="ACSN"/> <display value="Accession ID"/> </coding> </type> <system value="http://lab.acme.org/specimens/2015"/> <value value="X352356"/> </identifier> <identifier> <type> <coding> <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/> <code value="ACSN"/> <display value="Accession ID"/> </coding> </type> <system value="http://lab.acme.org/specimens/2015"/> <value value="X352356"/> </identifier> <accessionIdentifier> <!-- accession identifier - e.g. assigned by the labaratory when it is received. This is common, unlike specimen identifier --> <system value="http://lab.acme.org/specimens/2015"/> <value value="X352356"/> </accessionIdentifier> <status value="unavailable"/> <type> <!-- Type is a loosely defined field because there is such a lot of variation in how it is used. The principal variation is how much information that could be represented elsewhere is also represented here. For instance, here's some possible types: lithium heparin plasma (+ .container.additive) (e.g. SNOMED CT 446272009) transfusion bag of blood (+ container.type) Peritoneal lavage (+ collection.bodySite) If the type includes other fields, it would be normal not to populate the other fields Note that this practice is so widespread that it's pointless to try and stop it --> <coding> <system value="http://snomed.info/sct"/> <code value="119339001"/> <display value="Stool specimen"/> </coding> </type> <subject> <reference value="Patient/example"/> </subject> <receivedTime value="2015-08-16T07:03:00Z"/> <collection> <collector> <!-- in practice, collecter is almost always recorded --> <display value="Patient"/> </collector> <!-- the time of collection is usually required. Usually a point in time, but can be a period (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine) --> <collectedDateTime value="2011-08-16T06:15:00Z"/> <!-- method is usually implied by type --> <method> <coding> <system value="http://terminology.hl7.org/CodeSystem/v2-0488"/> <code value="LNV"/> </coding> </method> </collection> </Specimen> </contained> <identifier> <type> <coding> <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/> <code value="ACSN"/> <display value="Accession ID"/> </coding> </type> <system value="http://lab.acme.org/specimens/2011"/> <value value="X352356-ISO1"/> </identifier> <identifier> <type> <coding> <system value="http://terminology.hl7.org/CodeSystem/v2-0203"/> <code value="ACSN"/> <display value="Accession ID"/> </coding> </type> <system value="http://lab.acme.org/specimens/2011"/> <value value="X352356-ISO1"/> </identifier> <accessionIdentifier> <system value="http://lab.acme.org/specimens/2011"/> <value value="X352356-ISO1"/> </accessionIdentifier> <status value="available"/> <type> <coding> <system value="http://snomed.info/sct"/> <code value="119303007"/> <display value="Microbial isolate specimen"/> </coding> <text value="Bacterial isolate specimen"/> </type> <subject> <reference value="Patient/example"/> </subject> <receivedTime value="2015-08-18T07:03:00Z"/> <parent> <reference value="#stool"/> </parent> <role> <coding> <code value="p"/> <display value="Patient"/> </coding> </role> <collection> <collector> <!-- in practice, collecter is almost always recorded --> <reference value="Practitioner/f202"/> </collector> <!-- the time of collection is usually required. Usually a point in time, but can be a period (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine) --> <collectedDateTime value="2015-08-16T07:03:00Z"/> <!-- method is usually implied by type --> <method> <coding> <system value="http://terminology.hl7.org/CodeSystem/v2-0488"/> <code value="BAP"/> </coding> </method> </collection> <note> <text value="Patient dropped off specimen"/> </note> </Specimen>
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.
FHIR ®© HL7.org 2011+. FHIR R6 hl7.fhir.core#6.0.0-ballot3 generated on Thu, Aug 28, 2025 21:15+0000.
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