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Clinical Genomics Work Group | Maturity Level: N/A | Standards Status: Informative | Compartments: No defined compartments |
Raw JSON (canonical form + also see JSON Format Specification)
Simple Sequence example 1
{ "resourceType" : "MolecularDefinition", "id" : "example-sequence1", "meta" : { "profile" : ["http://hl7.org/fhir/StructureDefinition/sequence"] }, "type" : "dna", "representation" : [{ "literal" : { "value" : "ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA" }, "resolvable" : { "contentType" : "text/html", "url" : "https://www.ncbi.nlm.nih.gov/nuccore/MW716256.1?report=fasta" }, "extracted" : { "startingMolecule" : { "reference" : "MolecularDefinition/example-starting-sequence-2b-extracted", "type" : "MolecularDefinition", "display" : "Starting Sequence Resource: ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGAGCCTGTACAGACAGTT AATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA" }, "start" : 0, "end" : 754, "coordinateSystem" : { "coding" : [{ "system" : "http://loinc.org", "code" : "LA30100-4", "display" : "0-based interval counting" }], "text" : "0-based interval counting" }, "reverseComplement" : false }, "concatenated" : { "sequenceElement" : [{ "sequence" : { "reference" : "MolecularDefinition/example-sequence0-2b-concatenated", "type" : "MolecularDefinition", "display" : "Sequence-of index 0-Resource for concatenated sequence example: ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG" }, "ordinalIndex" : 0 }, { "sequence" : { "reference" : "MolecularDefinition/example-sequence1-2b-concatenated", "type" : "MolecularDefinition", "display" : "Sequence-of index 1-Resource for concatenated sequence example: AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG" }, "ordinalIndex" : 1 }, { "sequence" : { "reference" : "MolecularDefinition/example-sequence2-2b-concatenated", "type" : "MolecularDefinition", "display" : "Sequence-of index 2-Resource for concatenated sequence example: TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA" }, "ordinalIndex" : 2 }] }, "relative" : { "startingMolecule" : { "reference" : "MolecularDefinition/example-starting-sequence-2b-relative", "type" : "MolecularDefinition", "display" : "Starting Sequence Resource" }, "edit" : [{ "coordinateSystem" : { "coding" : [{ "system" : "http://loinc.org", "code" : "LA30100-4", "display" : "0-based interval counting" }], "text" : "0-based interval counting" }, "start" : 0, "end" : 5, "replacementMolecule" : { "reference" : "MolecularDefinition/example-replacement-sequence", "type" : "MolecularDefinition", "display" : "Replacement Sequence Resource: ATGAA" }, "replacedMolecule" : { "reference" : "MolecularDefinition/example-replaced-sequence", "type" : "MolecularDefinition", "display" : "Replaced Sequence Resource: CCCCC" } }] } }] }
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.
FHIR ®© HL7.org 2011+. FHIR R6 hl7.fhir.core#6.0.0-ballot2 generated on Thu, Nov 14, 2024 20:19+0000.
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