Bacterial Isolate from Stool sample

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Specimen/isolate> a fhir:Specimen ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "isolate"] ; # 
  fhir:contained ( [
     a fhir:Specimen ;
     fhir:id [ fhir:v "stool" ] ;
     fhir:identifier ( [
       fhir:type [
         fhir:coding ( [
           fhir:system [
             fhir:v "http://terminology.hl7.org/CodeSystem/v2-0203"^^xsd:anyURI ;
             fhir:l <http://terminology.hl7.org/CodeSystem/v2-0203>
           ] ;
           fhir:code [ fhir:v "ACSN" ] ;
           fhir:display [ fhir:v "Accession ID" ]
         ] )
       ] ;
       fhir:system [
         fhir:v "http://lab.acme.org/specimens/2015"^^xsd:anyURI ;
         fhir:l <http://lab.acme.org/specimens/2015>
       ] ;
       fhir:value [ fhir:v "X352356" ]
     ] [
       fhir:type [
         fhir:coding ( [
           fhir:system [
             fhir:v "http://terminology.hl7.org/CodeSystem/v2-0203"^^xsd:anyURI ;
             fhir:l <http://terminology.hl7.org/CodeSystem/v2-0203>
           ] ;
           fhir:code [ fhir:v "ACSN" ] ;
           fhir:display [ fhir:v "Accession ID" ]
         ] )
       ] ;
       fhir:system [
         fhir:v "http://lab.acme.org/specimens/2015"^^xsd:anyURI ;
         fhir:l <http://lab.acme.org/specimens/2015>
       ] ;
       fhir:value [ fhir:v "X352356" ]
     ] ) ;
     fhir:status [ fhir:v "unavailable" ] ;
     fhir:type [
       fhir:coding ( [
         a sct:119339001 ;
         fhir:system [
           fhir:v "http://snomed.info/sct"^^xsd:anyURI ;
           fhir:l <http://snomed.info/sct>
         ] ;
         fhir:code [ fhir:v "119339001" ] ;
         fhir:display [ fhir:v "Stool specimen" ]
       ] ) # Type is a loosely defined field because there is such a lot of variation in how it is used.\n   The principal variation is how much information that could be represented elsewhere is also\n   represented here. For instance, here's some possible types:\n     lithium heparin plasma   (+ .container.additive) (e.g. SNOMED CT 446272009)\n     transfusion bag of blood (+ container.type)\n     Peritoneal lavage        (+ collection.bodySite)\n   If the type includes other fields, it would be normal not to populate the other fields\n\n   Note that this practice is so widespread that it's pointless to try and stop it
     ] ;
     fhir:subject [
       fhir:l <http://hl7.org/fhir/Patient/example> ;
       fhir:reference [ fhir:v "Patient/example" ]
     ] ;
     fhir:receivedTime [ fhir:v "2015-08-16T07:03:00Z"^^xsd:dateTime ] ;
     fhir:collection [
       fhir:collector [
         fhir:display [ fhir:v "Patient" ] # in practice, collecter is almost always recorded
       ] ;
       fhir:collected [
         a fhir:DateTime ;
         fhir:v "2011-08-16T06:15:00Z"^^xsd:dateTime
       ] ; # the time of collection is usually required. Usually a point in time, but can be a period \n      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)
       fhir:method [
         fhir:coding ( [
           fhir:system [
             fhir:v "http://terminology.hl7.org/CodeSystem/v2-0488"^^xsd:anyURI ;
             fhir:l <http://terminology.hl7.org/CodeSystem/v2-0488>
           ] ;
           fhir:code [ fhir:v "LNV" ]
         ] )
       ] # method is usually implied by type
     ]
  ] ) ; # 
  fhir:identifier ( [
     fhir:type [
       fhir:coding ( [
         fhir:system [
           fhir:v "http://terminology.hl7.org/CodeSystem/v2-0203"^^xsd:anyURI ;
           fhir:l <http://terminology.hl7.org/CodeSystem/v2-0203>
         ] ;
         fhir:code [ fhir:v "ACSN" ] ;
         fhir:display [ fhir:v "Accession ID" ]
       ] )
     ] ;
     fhir:system [
       fhir:v "http://lab.acme.org/specimens/2011"^^xsd:anyURI ;
       fhir:l <http://lab.acme.org/specimens/2011>
     ] ;
     fhir:value [ fhir:v "X352356-ISO1" ]
  ] [
     fhir:type [
       fhir:coding ( [
         fhir:system [
           fhir:v "http://terminology.hl7.org/CodeSystem/v2-0203"^^xsd:anyURI ;
           fhir:l <http://terminology.hl7.org/CodeSystem/v2-0203>
         ] ;
         fhir:code [ fhir:v "ACSN" ] ;
         fhir:display [ fhir:v "Accession ID" ]
       ] )
     ] ;
     fhir:system [
       fhir:v "http://lab.acme.org/specimens/2011"^^xsd:anyURI ;
       fhir:l <http://lab.acme.org/specimens/2011>
     ] ;
     fhir:value [ fhir:v "X352356-ISO1" ]
  ] ) ; # 
  fhir:status [ fhir:v "available"] ; # 
  fhir:type [
     fhir:coding ( [
       a sct:119303007 ;
       fhir:system [
         fhir:v "http://snomed.info/sct"^^xsd:anyURI ;
         fhir:l <http://snomed.info/sct>
       ] ;
       fhir:code [ fhir:v "119303007" ] ;
       fhir:display [ fhir:v "Microbial isolate specimen" ]
     ] ) ;
     fhir:text [ fhir:v "Bacterial isolate specimen" ]
  ] ; # 
  fhir:subject [
     fhir:l <http://hl7.org/fhir/Patient/example> ;
     fhir:reference [ fhir:v "Patient/example" ]
  ] ; # 
  fhir:receivedTime [ fhir:v "2015-08-18T07:03:00Z"^^xsd:dateTime] ; # 
  fhir:parent ( [
     fhir:l <#stool> ;
     fhir:reference [ fhir:v "#stool" ]
  ] ) ; # 
  fhir:role ( [
     fhir:coding ( [
       fhir:code [ fhir:v "p" ] ;
       fhir:display [ fhir:v "Patient" ]
     ] )
  ] ) ; # 
  fhir:collection [
     fhir:collector [
       fhir:l <http://hl7.org/fhir/Practitioner/f202> ;
       fhir:reference [ fhir:v "Practitioner/f202" ] # in practice, collecter is almost always recorded
     ] ;
     fhir:collected [
       a fhir:DateTime ;
       fhir:v "2015-08-16T07:03:00Z"^^xsd:dateTime
     ] ; # the time of collection is usually required. Usually a point in time, but can be a period \n      (collectedPeriod) if it's a timed collection (e.g. a 24 hour urine)
     fhir:method [
       fhir:coding ( [
         fhir:system [
           fhir:v "http://terminology.hl7.org/CodeSystem/v2-0488"^^xsd:anyURI ;
           fhir:l <http://terminology.hl7.org/CodeSystem/v2-0488>
         ] ;
         fhir:code [ fhir:v "BAP" ]
       ] )
     ] # method is usually implied by type
  ] ; # 
  fhir:note ( [
     fhir:text [ fhir:v "Patient dropped off specimen" ]
  ] ) . # 

<http://hl7.org/fhir/Patient/example> a fhir:Patient .

<http://hl7.org/fhir/Practitioner/f202> a fhir:Practitioner .

# -------------------------------------------------------------------------------------