This is the Continuous Integration Build of FHIR (will be incorrect/inconsistent at times).
See the Directory of published versions
Clinical Genomics Work Group | Maturity Level: 0 | Trial Use | Use Context: Any |
Definitions for the variation Profile.
MolecularDefinition | |||||||||||||||||||||||||
Element Id | MolecularDefinition | ||||||||||||||||||||||||
Definition | This profile defines how to represent variation in FHIR. | ||||||||||||||||||||||||
Short Display | FHIR Variation Profile | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.id | ||||||||||||||||||||||||
Definition | The logical id of the resource, as used in the URL for the resource. Once assigned, this value never changes. | ||||||||||||||||||||||||
Short Display | Logical id of this artifact | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | id | ||||||||||||||||||||||||
Comments | Within the context of the FHIR RESTful interactions, the resource has an id except for cases like the create and conditional update. Otherwise, the use of the resouce id depends on the given use case. | ||||||||||||||||||||||||
MolecularDefinition.meta | |||||||||||||||||||||||||
Element Id | MolecularDefinition.meta | ||||||||||||||||||||||||
Definition | The metadata about the resource. This is content that is maintained by the infrastructure. Changes to the content might not always be associated with version changes to the resource. | ||||||||||||||||||||||||
Short Display | Metadata about the resource | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Meta | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.implicitRules | |||||||||||||||||||||||||
Element Id | MolecularDefinition.implicitRules | ||||||||||||||||||||||||
Definition | A reference to a set of rules that were followed when the resource was constructed, and which must be understood when processing the content. Often, this is a reference to an implementation guide that defines the special rules along with other profiles etc. | ||||||||||||||||||||||||
Short Display | A set of rules under which this content was created | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | uri | ||||||||||||||||||||||||
Is Modifier | true (Reason: This element is labeled as a modifier because the implicit rules may provide additional knowledge about the resource that modifies its meaning or interpretation) | ||||||||||||||||||||||||
Comments | Asserting this rule set restricts the content to be only understood by a limited set of trading partners. This inherently limits the usefulness of the data in the long term. However, the existing health eco-system is highly fractured, and not yet ready to define, collect, and exchange data in a generally computable sense. Wherever possible, implementers and/or specification writers should avoid using this element. Often, when used, the URL is a reference to an implementation guide that defines these special rules as part of its narrative along with other profiles, value sets, etc. | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.language | |||||||||||||||||||||||||
Element Id | MolecularDefinition.language | ||||||||||||||||||||||||
Definition | The base language in which the resource is written. | ||||||||||||||||||||||||
Short Display | Language of the resource content | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Terminology Binding | IETF language tag for a human language The codes SHALL be taken from All Languages | ||||||||||||||||||||||||
Type | code | ||||||||||||||||||||||||
Comments | Language is provided to support indexing and accessibility (typically, services such as text to speech use the language tag). The html language tag in the narrative applies to the narrative. The language tag on the resource may be used to specify the language of other presentations generated from the data in the resource. Not all the content has to be in the base language. The Resource.language should not be assumed to apply to the narrative automatically. If a language is specified, it should it also be specified on the div element in the html (see rules in HTML5 for information about the relationship between xml:lang and the html lang attribute). | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.text | |||||||||||||||||||||||||
Element Id | MolecularDefinition.text | ||||||||||||||||||||||||
Definition | A human-readable narrative that contains a summary of the resource and can be used to represent the content of the resource to a human. The narrative need not encode all the structured data, but is required to contain sufficient detail to make it "clinically safe" for a human to just read the narrative. Resource definitions may define what content should be represented in the narrative to ensure clinical safety. | ||||||||||||||||||||||||
Short Display | Text summary of the resource, for human interpretation | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: dom-6 | ||||||||||||||||||||||||
Type | Narrative | ||||||||||||||||||||||||
Alternate Names | narrative, html, xhtml, display | ||||||||||||||||||||||||
Comments | Contained resources do not have a narrative. Resources that are not contained SHOULD have a narrative. In some cases, a resource may only have text with little or no additional discrete data (as long as all minOccurs=1 elements are satisfied). This may be necessary for data from legacy systems where information is captured as a "text blob" or where text is additionally entered raw or narrated and encoded information is added later. | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.contained | |||||||||||||||||||||||||
Element Id | MolecularDefinition.contained | ||||||||||||||||||||||||
Definition | These resources do not have an independent existence apart from the resource that contains them - they cannot be identified independently, nor can they have their own independent transaction scope. This is allowed to be a Parameters resource if and only if it is referenced by a resource that provides context/meaning. | ||||||||||||||||||||||||
Short Display | Contained, inline Resources | ||||||||||||||||||||||||
Cardinality | 0..* This element is affected by the following invariants: dom-2, dom-4, dom-3, dom-5 | ||||||||||||||||||||||||
Type | Resource | ||||||||||||||||||||||||
Alternate Names | inline resources, anonymous resources, contained resources | ||||||||||||||||||||||||
Comments | This should never be done when the content can be identified properly, as once identification is lost, it is extremely difficult (and context dependent) to restore it again. Contained resources may have profiles and tags in their meta elements, but SHALL NOT have security labels. | ||||||||||||||||||||||||
MolecularDefinition.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the resource. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the resource and that modifies the understanding of the element that contains it and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer is allowed to define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the resource that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.identifier | |||||||||||||||||||||||||
Element Id | MolecularDefinition.identifier | ||||||||||||||||||||||||
Definition | A unique identifier for this particular resource instance. | ||||||||||||||||||||||||
Short Display | Unique ID for this particular resource | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Identifier | ||||||||||||||||||||||||
Requirements | Allows MolecularDefinition to be distinguished and referenced. | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.type | |||||||||||||||||||||||||
Element Id | MolecularDefinition.type | ||||||||||||||||||||||||
Definition | The type of the sequence, e.g., amino acid, DNA, or RNA sequence. | ||||||||||||||||||||||||
Short Display | Sequence type, e.g., aa, dna, or rna | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Terminology Binding | Type of a molecule -- DNA, RNA, or amino acid sequence. The codes SHALL be taken from sequence Type | ||||||||||||||||||||||||
Type | code | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location | ||||||||||||||||||||||||
Definition | The molecular location of this molecule. | ||||||||||||||||||||||||
Short Display | Location of this molecule | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.location.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.sequenceLocation | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation | ||||||||||||||||||||||||
Definition | The Location of this molecule in context of a sequence. | ||||||||||||||||||||||||
Short Display | Location of this molecule in context of a sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.sequenceLocation.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.location.sequenceLocation.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.sequenceLocation.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.sequenceLocation.sequenceContext | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation.sequenceContext | ||||||||||||||||||||||||
Definition | The reference Sequence that contains this location. | ||||||||||||||||||||||||
Short Display | Reference sequence | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.sequenceLocation.coordinateInterval | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation.coordinateInterval | ||||||||||||||||||||||||
Definition | The coordinate interval for this location. | ||||||||||||||||||||||||
Short Display | Coordinate Interval for this location | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.sequenceLocation.coordinateInterval.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation.coordinateInterval.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.location.sequenceLocation.coordinateInterval.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation.coordinateInterval.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.sequenceLocation.coordinateInterval.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation.coordinateInterval.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.sequenceLocation.coordinateInterval.numberingSystem | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation.coordinateInterval.numberingSystem | ||||||||||||||||||||||||
Definition | The coordinate system of this interval. | ||||||||||||||||||||||||
Short Display | Coordinate System | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.sequenceLocation.coordinateInterval.start[x] | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation.coordinateInterval.start[x] | ||||||||||||||||||||||||
Definition | The start of this interval. | ||||||||||||||||||||||||
Short Display | Start | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Choice of: Quantity, Range | ||||||||||||||||||||||||
[x] Note | See Choice of Datatypes for further information about how to use [x] | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.sequenceLocation.coordinateInterval.end[x] | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation.coordinateInterval.end[x] | ||||||||||||||||||||||||
Definition | The end of this interval. | ||||||||||||||||||||||||
Short Display | End | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Choice of: Quantity, Range | ||||||||||||||||||||||||
[x] Note | See Choice of Datatypes for further information about how to use [x] | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.sequenceLocation.strand | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.sequenceLocation.strand | ||||||||||||||||||||||||
Definition | The identification of the strand direction, i.e, forward vs reverse strand. | ||||||||||||||||||||||||
Short Display | Forward or Reverse | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.cytobandLocation | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation | ||||||||||||||||||||||||
Definition | The location of this molecule in context of a cytoband. | ||||||||||||||||||||||||
Short Display | Location of this molecule in context of a cytoband | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.location.cytobandLocation.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.genomeAssembly | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.genomeAssembly | ||||||||||||||||||||||||
Definition | The reference genome assemble. | ||||||||||||||||||||||||
Short Display | Reference Genome | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.genomeAssembly.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.genomeAssembly.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.genomeAssembly.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.genomeAssembly.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.genomeAssembly.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.genomeAssembly.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.genomeAssembly.organism | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.genomeAssembly.organism | ||||||||||||||||||||||||
Definition | Species of the organism. | ||||||||||||||||||||||||
Short Display | Species of the organism | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.genomeAssembly.build | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.genomeAssembly.build | ||||||||||||||||||||||||
Definition | The build number of this genome assemble. | ||||||||||||||||||||||||
Short Display | Build number | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.genomeAssembly.accession | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.genomeAssembly.accession | ||||||||||||||||||||||||
Definition | The accession of this genome assemble. | ||||||||||||||||||||||||
Short Display | Accession | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.genomeAssembly.description[x] | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.genomeAssembly.description[x] | ||||||||||||||||||||||||
Definition | The description of this genome assemble. | ||||||||||||||||||||||||
Short Display | Genome assemble description | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Choice of: markdown, string | ||||||||||||||||||||||||
[x] Note | See Choice of Datatypes for further information about how to use [x] | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval | ||||||||||||||||||||||||
Definition | The Cytoband Interval. | ||||||||||||||||||||||||
Short Display | Cytoband Interval | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.chromosome | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.chromosome | ||||||||||||||||||||||||
Definition | The chromosome where this cytoband interval occurs. | ||||||||||||||||||||||||
Short Display | Chromosome | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband | ||||||||||||||||||||||||
Definition | The start of this cytoband Interval. | ||||||||||||||||||||||||
Short Display | Start | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.arm[x] | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.arm[x] | ||||||||||||||||||||||||
Definition | The arm of this start interval. | ||||||||||||||||||||||||
Short Display | Arm | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Choice of: code, string | ||||||||||||||||||||||||
[x] Note | See Choice of Datatypes for further information about how to use [x] | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.region[x] | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.region[x] | ||||||||||||||||||||||||
Definition | The region of this start interval. | ||||||||||||||||||||||||
Short Display | Region | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Choice of: code, string | ||||||||||||||||||||||||
[x] Note | See Choice of Datatypes for further information about how to use [x] | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.band[x] | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.band[x] | ||||||||||||||||||||||||
Definition | The band of this start interval. | ||||||||||||||||||||||||
Short Display | Band | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Choice of: code, string | ||||||||||||||||||||||||
[x] Note | See Choice of Datatypes for further information about how to use [x] | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.subBand[x] | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.subBand[x] | ||||||||||||||||||||||||
Definition | The sub-band of this start interval. | ||||||||||||||||||||||||
Short Display | Sub-band | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Choice of: code, string | ||||||||||||||||||||||||
[x] Note | See Choice of Datatypes for further information about how to use [x] | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband | ||||||||||||||||||||||||
Definition | The end of this cytoband Interval. | ||||||||||||||||||||||||
Short Display | End | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.arm[x] | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.arm[x] | ||||||||||||||||||||||||
Definition | The arm of this end interval. | ||||||||||||||||||||||||
Short Display | Arm | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Choice of: code, string | ||||||||||||||||||||||||
[x] Note | See Choice of Datatypes for further information about how to use [x] | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.region[x] | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.region[x] | ||||||||||||||||||||||||
Definition | The region of this end interval. | ||||||||||||||||||||||||
Short Display | Region | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Choice of: code, string | ||||||||||||||||||||||||
[x] Note | See Choice of Datatypes for further information about how to use [x] | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.band[x] | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.band[x] | ||||||||||||||||||||||||
Definition | The band of this end interval. | ||||||||||||||||||||||||
Short Display | Band | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Choice of: code, string | ||||||||||||||||||||||||
[x] Note | See Choice of Datatypes for further information about how to use [x] | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.subBand[x] | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.subBand[x] | ||||||||||||||||||||||||
Definition | The sub-band of this end interval. | ||||||||||||||||||||||||
Short Display | SuBand | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Choice of: code, string | ||||||||||||||||||||||||
[x] Note | See Choice of Datatypes for further information about how to use [x] | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.featureLocation | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.featureLocation | ||||||||||||||||||||||||
Definition | The location of this molecule in context of a feature. | ||||||||||||||||||||||||
Short Display | Location in context of a feature | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.featureLocation.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.featureLocation.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.location.featureLocation.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.featureLocation.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.featureLocation.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.featureLocation.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.location.featureLocation.geneId | |||||||||||||||||||||||||
Element Id | MolecularDefinition.location.featureLocation.geneId | ||||||||||||||||||||||||
Definition | The gene Id where this molecule occurs. | ||||||||||||||||||||||||
Short Display | Gene Id | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.memberState | |||||||||||||||||||||||||
Element Id | MolecularDefinition.memberState | ||||||||||||||||||||||||
Definition | A member or part of this molecule. | ||||||||||||||||||||||||
Short Display | Member | ||||||||||||||||||||||||
Cardinality | 0..0 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation | ||||||||||||||||||||||||
Definition | The representation of this molecular definition, e.g., as a literal or repeated elements. | ||||||||||||||||||||||||
Short Display | Representation | ||||||||||||||||||||||||
Cardinality | 2..* | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
Slicing | This element introduces a set of slices. The slicing rules are:
| ||||||||||||||||||||||||
MolecularDefinition.representation.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.focus | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.focus | ||||||||||||||||||||||||
Definition | A representation focus, e.g., reference or alternative state. | ||||||||||||||||||||||||
Short Display | The focus of the representation | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.code | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.code | ||||||||||||||||||||||||
Definition | A representation code. | ||||||||||||||||||||||||
Short Display | A code of the representation | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.literal | ||||||||||||||||||||||||
Definition | A literal representation. | ||||||||||||||||||||||||
Short Display | A literal representation | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.literal.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.literal.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.literal.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.literal.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.encoding | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.literal.encoding | ||||||||||||||||||||||||
Definition | The encoding used for the expression of the primary sequence. This defines the characters that may be used in the primary sequence and it permits the explicit inclusion/exclusion of IUPAC ambiguity codes. | ||||||||||||||||||||||||
Short Display | The encoding used for the expression of the primary sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.value | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.literal.value | ||||||||||||||||||||||||
Definition | The primary (linear) sequence, expressed as a literal string. | ||||||||||||||||||||||||
Short Display | The primary (linear) sequence, expressed as a literal string | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.resolvable | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.resolvable | ||||||||||||||||||||||||
Definition | A resolvable representation of a molecule that optionally contains formatting in addition to the specification of the primary sequence itself. The sequence may be provided inline as an attached document or through a resolvable URI. | ||||||||||||||||||||||||
Short Display | A resolvable representation of a molecule that optionally contains formatting in addition to the specification of the primary sequence itself | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Reference(DocumentReference) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.extracted | ||||||||||||||||||||||||
Definition | A Molecular Sequence that is represented as an extracted portion of a different Molecular Sequence. | ||||||||||||||||||||||||
Short Display | A Molecular Sequence that is represented as an extracted portion of a different Molecular Sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.extracted.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.extracted.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.extracted.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.startingMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.extracted.startingMolecule | ||||||||||||||||||||||||
Definition | The Molecular Sequence that serves as the parent sequence, from which the intended sequence will be extracted. | ||||||||||||||||||||||||
Short Display | The Molecular Sequence that serves as the parent sequence, from which the intended sequence will be extracted | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.start | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.extracted.start | ||||||||||||||||||||||||
Definition | The start coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted. | ||||||||||||||||||||||||
Short Display | The start coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.end | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.extracted.end | ||||||||||||||||||||||||
Definition | The end coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted. | ||||||||||||||||||||||||
Short Display | The end coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.coordinateSystem | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.extracted.coordinateSystem | ||||||||||||||||||||||||
Definition | The coordinate system used to define the interval that defines the subsequence to be extracted. Coordinate systems are usually 0- or 1-based. | ||||||||||||||||||||||||
Short Display | The coordinate system used to define the interval that defines the subsequence to be extracted. Coordinate systems are usually 0- or 1-based | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.reverseComplement | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.extracted.reverseComplement | ||||||||||||||||||||||||
Definition | A flag that indicates whether the extracted sequence should be reverse complemented. | ||||||||||||||||||||||||
Short Display | A flag that indicates whether the extracted sequence should be reverse complemented | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | boolean | ||||||||||||||||||||||||
Comments | This attribute might be needed in all sequence representation classes, so that any sequence representation could be reverseComplemented. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.repeated | ||||||||||||||||||||||||
Definition | A Molecular Sequence that is represented as a repeated sequence motif. | ||||||||||||||||||||||||
Short Display | A Molecular Sequence that is represented as a repeated sequence motif | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Comments | This class represents motifs that occur in tandem (immediately adjacent to each other) and without edits (each copy of the motif is identical). | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.repeated.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.repeated.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.repeated.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.sequenceMotif | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.repeated.sequenceMotif | ||||||||||||||||||||||||
Definition | The sequence that defines the repeated motif. | ||||||||||||||||||||||||
Short Display | The sequence that defines the repeated motif | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.copyCount | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.repeated.copyCount | ||||||||||||||||||||||||
Definition | The number of repeats (copies) of the sequence motif. | ||||||||||||||||||||||||
Short Display | The number of repeats (copies) of the sequence motif | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.concatenated | ||||||||||||||||||||||||
Definition | A Molecular Sequence that is represented as an ordered concatenation of two or more Molecular Sequences. | ||||||||||||||||||||||||
Short Display | A Molecular Sequence that is represented as an ordered concatenation of two or more Molecular Sequences | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.concatenated.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.concatenated.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.concatenated.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.concatenated.sequenceElement | ||||||||||||||||||||||||
Definition | One element of a concatenated Molecular Sequence. | ||||||||||||||||||||||||
Short Display | One element of a concatenated Molecular Sequence | ||||||||||||||||||||||||
Cardinality | 1..* | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Comments | At least two sequenceElement elements are required to represent a concatenated sequence. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.concatenated.sequenceElement.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.concatenated.sequenceElement.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.concatenated.sequenceElement.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.sequence | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.concatenated.sequenceElement.sequence | ||||||||||||||||||||||||
Definition | The Molecular Sequence corresponding to this element. | ||||||||||||||||||||||||
Short Display | The Molecular Sequence corresponding to this element | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.ordinalIndex | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.concatenated.sequenceElement.ordinalIndex | ||||||||||||||||||||||||
Definition | The ordinal position of this sequence element within the concatenated Molecular Sequence. | ||||||||||||||||||||||||
Short Display | The ordinal position of this sequence element within the concatenated Molecular Sequence | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Comments | 0 or 1 based indices are possible, could potentially skip numbers in the sequence, suggest implementers sort numerically prior to concatenating | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative | ||||||||||||||||||||||||
Definition | A Molecular Definition that is represented as an ordered series of edits on a specified starting sequence. | ||||||||||||||||||||||||
Short Display | A Molecular Definition that is represented as an ordered series of edits on a specified starting sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.relative.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.startingMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.startingMolecule | ||||||||||||||||||||||||
Definition | The Molecular Sequence that serves as the starting sequence, on which edits will be applied. | ||||||||||||||||||||||||
Short Display | The Molecular Sequence that serves as the starting sequence, on which edits will be applied | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.edit | ||||||||||||||||||||||||
Definition | An edit (change) made to a sequence. | ||||||||||||||||||||||||
Short Display | An edit (change) made to a sequence | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Comments | Edits are applied sequentially. The sequence that results from one edit operation is used as the 'starting' sequence of the next edit operation. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.edit.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.edit.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.edit.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.editOrder | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.edit.editOrder | ||||||||||||||||||||||||
Definition | The order of this edit, relative to other edits on the starting sequence. | ||||||||||||||||||||||||
Short Display | The order of this edit, relative to other edits on the starting sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.coordinateSystem | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.edit.coordinateSystem | ||||||||||||||||||||||||
Definition | The coordinate system used to define the edited intervals on the starting sequence. Coordinate systems are usually 0- or 1-based. | ||||||||||||||||||||||||
Short Display | The coordinate system used to define the edited intervals on the starting sequence. Coordinate systems are usually 0- or 1-based | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Terminology Binding | Genomic coordinate system. The codes SHALL be taken from http://loinc.org/LL5323-2/ ; other codes may be used where these codes are not suitable | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.start | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.edit.start | ||||||||||||||||||||||||
Definition | The start coordinate of the interval that will be edited. | ||||||||||||||||||||||||
Short Display | The start coordinate of the interval that will be edited | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.end | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.edit.end | ||||||||||||||||||||||||
Definition | The end coordinate of the interval that will be edited. | ||||||||||||||||||||||||
Short Display | The end coordinate of the interval that will be edited | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.replacementMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.edit.replacementMolecule | ||||||||||||||||||||||||
Definition | The sequence that defines the replacement sequence used in the edit operation. | ||||||||||||||||||||||||
Short Display | The sequence that defines the replacement sequence used in the edit operation | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.replacedMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation.relative.edit.replacedMolecule | ||||||||||||||||||||||||
Definition | The sequence on the 'starting' sequence for the edit operation, defined by the specified interval, that will be replaced during the edit. | ||||||||||||||||||||||||
Short Display | The sequence on the 'starting' sequence for the edit operation, defined by the specified interval, that will be replaced during the edit | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation(ContextState) | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState | ||||||||||||||||||||||||
Definition | The representation of this molecular definition, e.g., as a literal or repeated elements. | ||||||||||||||||||||||||
Short Display | Representation | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Must Support | true | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.focus | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.focus | ||||||||||||||||||||||||
Definition | A representation focus, e.g., reference or alternative state. | ||||||||||||||||||||||||
Short Display | The focus of the representation | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Pattern Value | <valueCodeableConcept xmlns="http://hl7.org/fhir"> <coding> <system value="http://hl7.org/fhir/moleculardefinition-focus"/> <code value="context-state"/> </coding> </valueCodeableConcept> | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.code | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.code | ||||||||||||||||||||||||
Definition | A representation code. | ||||||||||||||||||||||||
Short Display | A code of the representation | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.literal | ||||||||||||||||||||||||
Definition | A literal representation. | ||||||||||||||||||||||||
Short Display | A literal representation | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.literal.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.literal.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.literal.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.literal.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.encoding | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.literal.encoding | ||||||||||||||||||||||||
Definition | The encoding used for the expression of the primary sequence. This defines the characters that may be used in the primary sequence and it permits the explicit inclusion/exclusion of IUPAC ambiguity codes. | ||||||||||||||||||||||||
Short Display | The encoding used for the expression of the primary sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.value | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.literal.value | ||||||||||||||||||||||||
Definition | The primary (linear) sequence, expressed as a literal string. | ||||||||||||||||||||||||
Short Display | The primary (linear) sequence, expressed as a literal string | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.resolvable | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.resolvable | ||||||||||||||||||||||||
Definition | A resolvable representation of a molecule that optionally contains formatting in addition to the specification of the primary sequence itself. The sequence may be provided inline as an attached document or through a resolvable URI. | ||||||||||||||||||||||||
Short Display | A resolvable representation of a molecule that optionally contains formatting in addition to the specification of the primary sequence itself | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Reference(DocumentReference) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.extracted | ||||||||||||||||||||||||
Definition | A Molecular Sequence that is represented as an extracted portion of a different Molecular Sequence. | ||||||||||||||||||||||||
Short Display | A Molecular Sequence that is represented as an extracted portion of a different Molecular Sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.extracted.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.extracted.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.extracted.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.startingMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.extracted.startingMolecule | ||||||||||||||||||||||||
Definition | The Molecular Sequence that serves as the parent sequence, from which the intended sequence will be extracted. | ||||||||||||||||||||||||
Short Display | The Molecular Sequence that serves as the parent sequence, from which the intended sequence will be extracted | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.start | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.extracted.start | ||||||||||||||||||||||||
Definition | The start coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted. | ||||||||||||||||||||||||
Short Display | The start coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.end | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.extracted.end | ||||||||||||||||||||||||
Definition | The end coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted. | ||||||||||||||||||||||||
Short Display | The end coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.coordinateSystem | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.extracted.coordinateSystem | ||||||||||||||||||||||||
Definition | The coordinate system used to define the interval that defines the subsequence to be extracted. Coordinate systems are usually 0- or 1-based. | ||||||||||||||||||||||||
Short Display | The coordinate system used to define the interval that defines the subsequence to be extracted. Coordinate systems are usually 0- or 1-based | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.reverseComplement | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.extracted.reverseComplement | ||||||||||||||||||||||||
Definition | A flag that indicates whether the extracted sequence should be reverse complemented. | ||||||||||||||||||||||||
Short Display | A flag that indicates whether the extracted sequence should be reverse complemented | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | boolean | ||||||||||||||||||||||||
Comments | This attribute might be needed in all sequence representation classes, so that any sequence representation could be reverseComplemented. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.repeated | ||||||||||||||||||||||||
Definition | A Molecular Sequence that is represented as a repeated sequence motif. | ||||||||||||||||||||||||
Short Display | A Molecular Sequence that is represented as a repeated sequence motif | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Comments | This class represents motifs that occur in tandem (immediately adjacent to each other) and without edits (each copy of the motif is identical). | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.repeated.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.repeated.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.repeated.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.sequenceMotif | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.repeated.sequenceMotif | ||||||||||||||||||||||||
Definition | The sequence that defines the repeated motif. | ||||||||||||||||||||||||
Short Display | The sequence that defines the repeated motif | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.copyCount | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.repeated.copyCount | ||||||||||||||||||||||||
Definition | The number of repeats (copies) of the sequence motif. | ||||||||||||||||||||||||
Short Display | The number of repeats (copies) of the sequence motif | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.concatenated | ||||||||||||||||||||||||
Definition | A Molecular Sequence that is represented as an ordered concatenation of two or more Molecular Sequences. | ||||||||||||||||||||||||
Short Display | A Molecular Sequence that is represented as an ordered concatenation of two or more Molecular Sequences | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.concatenated.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.concatenated.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.concatenated.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.concatenated.sequenceElement | ||||||||||||||||||||||||
Definition | One element of a concatenated Molecular Sequence. | ||||||||||||||||||||||||
Short Display | One element of a concatenated Molecular Sequence | ||||||||||||||||||||||||
Cardinality | 1..* | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Comments | At least two sequenceElement elements are required to represent a concatenated sequence. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.concatenated.sequenceElement.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.concatenated.sequenceElement.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.concatenated.sequenceElement.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.sequence | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.concatenated.sequenceElement.sequence | ||||||||||||||||||||||||
Definition | The Molecular Sequence corresponding to this element. | ||||||||||||||||||||||||
Short Display | The Molecular Sequence corresponding to this element | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.ordinalIndex | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.concatenated.sequenceElement.ordinalIndex | ||||||||||||||||||||||||
Definition | The ordinal position of this sequence element within the concatenated Molecular Sequence. | ||||||||||||||||||||||||
Short Display | The ordinal position of this sequence element within the concatenated Molecular Sequence | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Comments | 0 or 1 based indices are possible, could potentially skip numbers in the sequence, suggest implementers sort numerically prior to concatenating | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative | ||||||||||||||||||||||||
Definition | A Molecular Definition that is represented as an ordered series of edits on a specified starting sequence. | ||||||||||||||||||||||||
Short Display | A Molecular Definition that is represented as an ordered series of edits on a specified starting sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.relative.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.startingMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.startingMolecule | ||||||||||||||||||||||||
Definition | The Molecular Sequence that serves as the starting sequence, on which edits will be applied. | ||||||||||||||||||||||||
Short Display | The Molecular Sequence that serves as the starting sequence, on which edits will be applied | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.edit | ||||||||||||||||||||||||
Definition | An edit (change) made to a sequence. | ||||||||||||||||||||||||
Short Display | An edit (change) made to a sequence | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Comments | Edits are applied sequentially. The sequence that results from one edit operation is used as the 'starting' sequence of the next edit operation. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.edit.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.edit.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.edit.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.editOrder | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.edit.editOrder | ||||||||||||||||||||||||
Definition | The order of this edit, relative to other edits on the starting sequence. | ||||||||||||||||||||||||
Short Display | The order of this edit, relative to other edits on the starting sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.coordinateSystem | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.edit.coordinateSystem | ||||||||||||||||||||||||
Definition | The coordinate system used to define the edited intervals on the starting sequence. Coordinate systems are usually 0- or 1-based. | ||||||||||||||||||||||||
Short Display | The coordinate system used to define the edited intervals on the starting sequence. Coordinate systems are usually 0- or 1-based | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Terminology Binding | Genomic coordinate system. The codes SHALL be taken from http://loinc.org/LL5323-2/ ; other codes may be used where these codes are not suitable | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.start | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.edit.start | ||||||||||||||||||||||||
Definition | The start coordinate of the interval that will be edited. | ||||||||||||||||||||||||
Short Display | The start coordinate of the interval that will be edited | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.end | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.edit.end | ||||||||||||||||||||||||
Definition | The end coordinate of the interval that will be edited. | ||||||||||||||||||||||||
Short Display | The end coordinate of the interval that will be edited | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.replacementMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.edit.replacementMolecule | ||||||||||||||||||||||||
Definition | The sequence that defines the replacement sequence used in the edit operation. | ||||||||||||||||||||||||
Short Display | The sequence that defines the replacement sequence used in the edit operation | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.replacedMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ContextState.relative.edit.replacedMolecule | ||||||||||||||||||||||||
Definition | The sequence on the 'starting' sequence for the edit operation, defined by the specified interval, that will be replaced during the edit. | ||||||||||||||||||||||||
Short Display | The sequence on the 'starting' sequence for the edit operation, defined by the specified interval, that will be replaced during the edit | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation(ReferenceState) | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState | ||||||||||||||||||||||||
Definition | The representation of this molecular definition, e.g., as a literal or repeated elements. | ||||||||||||||||||||||||
Short Display | Representation | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Must Support | true | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.focus | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.focus | ||||||||||||||||||||||||
Definition | A representation focus, e.g., reference or alternative state. | ||||||||||||||||||||||||
Short Display | The focus of the representation | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Pattern Value | <valueCodeableConcept xmlns="http://hl7.org/fhir"> <coding> <system value="http://hl7.org/fhir/moleculardefinition-focus"/> <code value="reference-state"/> </coding> </valueCodeableConcept> | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.code | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.code | ||||||||||||||||||||||||
Definition | A representation code. | ||||||||||||||||||||||||
Short Display | A code of the representation | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.literal | ||||||||||||||||||||||||
Definition | A literal representation. | ||||||||||||||||||||||||
Short Display | A literal representation | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.literal.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.literal.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.literal.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.literal.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.encoding | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.literal.encoding | ||||||||||||||||||||||||
Definition | The encoding used for the expression of the primary sequence. This defines the characters that may be used in the primary sequence and it permits the explicit inclusion/exclusion of IUPAC ambiguity codes. | ||||||||||||||||||||||||
Short Display | The encoding used for the expression of the primary sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.value | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.literal.value | ||||||||||||||||||||||||
Definition | The primary (linear) sequence, expressed as a literal string. | ||||||||||||||||||||||||
Short Display | The primary (linear) sequence, expressed as a literal string | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.resolvable | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.resolvable | ||||||||||||||||||||||||
Definition | A resolvable representation of a molecule that optionally contains formatting in addition to the specification of the primary sequence itself. The sequence may be provided inline as an attached document or through a resolvable URI. | ||||||||||||||||||||||||
Short Display | A resolvable representation of a molecule that optionally contains formatting in addition to the specification of the primary sequence itself | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Reference(DocumentReference) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.extracted | ||||||||||||||||||||||||
Definition | A Molecular Sequence that is represented as an extracted portion of a different Molecular Sequence. | ||||||||||||||||||||||||
Short Display | A Molecular Sequence that is represented as an extracted portion of a different Molecular Sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.extracted.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.extracted.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.extracted.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.startingMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.extracted.startingMolecule | ||||||||||||||||||||||||
Definition | The Molecular Sequence that serves as the parent sequence, from which the intended sequence will be extracted. | ||||||||||||||||||||||||
Short Display | The Molecular Sequence that serves as the parent sequence, from which the intended sequence will be extracted | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.start | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.extracted.start | ||||||||||||||||||||||||
Definition | The start coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted. | ||||||||||||||||||||||||
Short Display | The start coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.end | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.extracted.end | ||||||||||||||||||||||||
Definition | The end coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted. | ||||||||||||||||||||||||
Short Display | The end coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.coordinateSystem | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.extracted.coordinateSystem | ||||||||||||||||||||||||
Definition | The coordinate system used to define the interval that defines the subsequence to be extracted. Coordinate systems are usually 0- or 1-based. | ||||||||||||||||||||||||
Short Display | The coordinate system used to define the interval that defines the subsequence to be extracted. Coordinate systems are usually 0- or 1-based | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.reverseComplement | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.extracted.reverseComplement | ||||||||||||||||||||||||
Definition | A flag that indicates whether the extracted sequence should be reverse complemented. | ||||||||||||||||||||||||
Short Display | A flag that indicates whether the extracted sequence should be reverse complemented | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | boolean | ||||||||||||||||||||||||
Comments | This attribute might be needed in all sequence representation classes, so that any sequence representation could be reverseComplemented. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.repeated | ||||||||||||||||||||||||
Definition | A Molecular Sequence that is represented as a repeated sequence motif. | ||||||||||||||||||||||||
Short Display | A Molecular Sequence that is represented as a repeated sequence motif | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Comments | This class represents motifs that occur in tandem (immediately adjacent to each other) and without edits (each copy of the motif is identical). | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.repeated.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.repeated.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.repeated.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.sequenceMotif | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.repeated.sequenceMotif | ||||||||||||||||||||||||
Definition | The sequence that defines the repeated motif. | ||||||||||||||||||||||||
Short Display | The sequence that defines the repeated motif | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.copyCount | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.repeated.copyCount | ||||||||||||||||||||||||
Definition | The number of repeats (copies) of the sequence motif. | ||||||||||||||||||||||||
Short Display | The number of repeats (copies) of the sequence motif | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.concatenated | ||||||||||||||||||||||||
Definition | A Molecular Sequence that is represented as an ordered concatenation of two or more Molecular Sequences. | ||||||||||||||||||||||||
Short Display | A Molecular Sequence that is represented as an ordered concatenation of two or more Molecular Sequences | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.concatenated.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.concatenated.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.concatenated.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.concatenated.sequenceElement | ||||||||||||||||||||||||
Definition | One element of a concatenated Molecular Sequence. | ||||||||||||||||||||||||
Short Display | One element of a concatenated Molecular Sequence | ||||||||||||||||||||||||
Cardinality | 1..* | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Comments | At least two sequenceElement elements are required to represent a concatenated sequence. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.concatenated.sequenceElement.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.concatenated.sequenceElement.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.concatenated.sequenceElement.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.sequence | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.concatenated.sequenceElement.sequence | ||||||||||||||||||||||||
Definition | The Molecular Sequence corresponding to this element. | ||||||||||||||||||||||||
Short Display | The Molecular Sequence corresponding to this element | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.ordinalIndex | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.concatenated.sequenceElement.ordinalIndex | ||||||||||||||||||||||||
Definition | The ordinal position of this sequence element within the concatenated Molecular Sequence. | ||||||||||||||||||||||||
Short Display | The ordinal position of this sequence element within the concatenated Molecular Sequence | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Comments | 0 or 1 based indices are possible, could potentially skip numbers in the sequence, suggest implementers sort numerically prior to concatenating | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative | ||||||||||||||||||||||||
Definition | A Molecular Definition that is represented as an ordered series of edits on a specified starting sequence. | ||||||||||||||||||||||||
Short Display | A Molecular Definition that is represented as an ordered series of edits on a specified starting sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.relative.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.startingMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.startingMolecule | ||||||||||||||||||||||||
Definition | The Molecular Sequence that serves as the starting sequence, on which edits will be applied. | ||||||||||||||||||||||||
Short Display | The Molecular Sequence that serves as the starting sequence, on which edits will be applied | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.edit | ||||||||||||||||||||||||
Definition | An edit (change) made to a sequence. | ||||||||||||||||||||||||
Short Display | An edit (change) made to a sequence | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Comments | Edits are applied sequentially. The sequence that results from one edit operation is used as the 'starting' sequence of the next edit operation. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.edit.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.edit.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.edit.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.editOrder | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.edit.editOrder | ||||||||||||||||||||||||
Definition | The order of this edit, relative to other edits on the starting sequence. | ||||||||||||||||||||||||
Short Display | The order of this edit, relative to other edits on the starting sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.coordinateSystem | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.edit.coordinateSystem | ||||||||||||||||||||||||
Definition | The coordinate system used to define the edited intervals on the starting sequence. Coordinate systems are usually 0- or 1-based. | ||||||||||||||||||||||||
Short Display | The coordinate system used to define the edited intervals on the starting sequence. Coordinate systems are usually 0- or 1-based | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Terminology Binding | Genomic coordinate system. The codes SHALL be taken from http://loinc.org/LL5323-2/ ; other codes may be used where these codes are not suitable | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.start | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.edit.start | ||||||||||||||||||||||||
Definition | The start coordinate of the interval that will be edited. | ||||||||||||||||||||||||
Short Display | The start coordinate of the interval that will be edited | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.end | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.edit.end | ||||||||||||||||||||||||
Definition | The end coordinate of the interval that will be edited. | ||||||||||||||||||||||||
Short Display | The end coordinate of the interval that will be edited | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.replacementMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.edit.replacementMolecule | ||||||||||||||||||||||||
Definition | The sequence that defines the replacement sequence used in the edit operation. | ||||||||||||||||||||||||
Short Display | The sequence that defines the replacement sequence used in the edit operation | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.replacedMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:ReferenceState.relative.edit.replacedMolecule | ||||||||||||||||||||||||
Definition | The sequence on the 'starting' sequence for the edit operation, defined by the specified interval, that will be replaced during the edit. | ||||||||||||||||||||||||
Short Display | The sequence on the 'starting' sequence for the edit operation, defined by the specified interval, that will be replaced during the edit | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation(AlternativeState) | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState | ||||||||||||||||||||||||
Definition | The representation of this molecular definition, e.g., as a literal or repeated elements. | ||||||||||||||||||||||||
Short Display | Representation | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Must Support | true | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.focus | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.focus | ||||||||||||||||||||||||
Definition | A representation focus, e.g., reference or alternative state. | ||||||||||||||||||||||||
Short Display | The focus of the representation | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Pattern Value | <valueCodeableConcept xmlns="http://hl7.org/fhir"> <coding> <system value="http://hl7.org/fhir/moleculardefinition-focus"/> <code value="alternative-state"/> </coding> </valueCodeableConcept> | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.code | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.code | ||||||||||||||||||||||||
Definition | A representation code. | ||||||||||||||||||||||||
Short Display | A code of the representation | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.literal | ||||||||||||||||||||||||
Definition | A literal representation. | ||||||||||||||||||||||||
Short Display | A literal representation | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.literal.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.literal.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.literal.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.literal.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.encoding | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.literal.encoding | ||||||||||||||||||||||||
Definition | The encoding used for the expression of the primary sequence. This defines the characters that may be used in the primary sequence and it permits the explicit inclusion/exclusion of IUPAC ambiguity codes. | ||||||||||||||||||||||||
Short Display | The encoding used for the expression of the primary sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.literal.value | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.literal.value | ||||||||||||||||||||||||
Definition | The primary (linear) sequence, expressed as a literal string. | ||||||||||||||||||||||||
Short Display | The primary (linear) sequence, expressed as a literal string | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.resolvable | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.resolvable | ||||||||||||||||||||||||
Definition | A resolvable representation of a molecule that optionally contains formatting in addition to the specification of the primary sequence itself. The sequence may be provided inline as an attached document or through a resolvable URI. | ||||||||||||||||||||||||
Short Display | A resolvable representation of a molecule that optionally contains formatting in addition to the specification of the primary sequence itself | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Reference(DocumentReference) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.extracted | ||||||||||||||||||||||||
Definition | A Molecular Sequence that is represented as an extracted portion of a different Molecular Sequence. | ||||||||||||||||||||||||
Short Display | A Molecular Sequence that is represented as an extracted portion of a different Molecular Sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.extracted.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.extracted.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.extracted.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.startingMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.extracted.startingMolecule | ||||||||||||||||||||||||
Definition | The Molecular Sequence that serves as the parent sequence, from which the intended sequence will be extracted. | ||||||||||||||||||||||||
Short Display | The Molecular Sequence that serves as the parent sequence, from which the intended sequence will be extracted | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.start | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.extracted.start | ||||||||||||||||||||||||
Definition | The start coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted. | ||||||||||||||||||||||||
Short Display | The start coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.end | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.extracted.end | ||||||||||||||||||||||||
Definition | The end coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted. | ||||||||||||||||||||||||
Short Display | The end coordinate (on the parent sequence) of the interval that defines the subsequence to be extracted | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.coordinateSystem | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.extracted.coordinateSystem | ||||||||||||||||||||||||
Definition | The coordinate system used to define the interval that defines the subsequence to be extracted. Coordinate systems are usually 0- or 1-based. | ||||||||||||||||||||||||
Short Display | The coordinate system used to define the interval that defines the subsequence to be extracted. Coordinate systems are usually 0- or 1-based | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.extracted.reverseComplement | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.extracted.reverseComplement | ||||||||||||||||||||||||
Definition | A flag that indicates whether the extracted sequence should be reverse complemented. | ||||||||||||||||||||||||
Short Display | A flag that indicates whether the extracted sequence should be reverse complemented | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | boolean | ||||||||||||||||||||||||
Comments | This attribute might be needed in all sequence representation classes, so that any sequence representation could be reverseComplemented. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.repeated | ||||||||||||||||||||||||
Definition | A Molecular Sequence that is represented as a repeated sequence motif. | ||||||||||||||||||||||||
Short Display | A Molecular Sequence that is represented as a repeated sequence motif | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Comments | This class represents motifs that occur in tandem (immediately adjacent to each other) and without edits (each copy of the motif is identical). | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.repeated.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.repeated.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.repeated.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.sequenceMotif | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.repeated.sequenceMotif | ||||||||||||||||||||||||
Definition | The sequence that defines the repeated motif. | ||||||||||||||||||||||||
Short Display | The sequence that defines the repeated motif | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.repeated.copyCount | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.repeated.copyCount | ||||||||||||||||||||||||
Definition | The number of repeats (copies) of the sequence motif. | ||||||||||||||||||||||||
Short Display | The number of repeats (copies) of the sequence motif | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.concatenated | ||||||||||||||||||||||||
Definition | A Molecular Sequence that is represented as an ordered concatenation of two or more Molecular Sequences. | ||||||||||||||||||||||||
Short Display | A Molecular Sequence that is represented as an ordered concatenation of two or more Molecular Sequences | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.concatenated.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.concatenated.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.concatenated.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.concatenated.sequenceElement | ||||||||||||||||||||||||
Definition | One element of a concatenated Molecular Sequence. | ||||||||||||||||||||||||
Short Display | One element of a concatenated Molecular Sequence | ||||||||||||||||||||||||
Cardinality | 1..* | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Comments | At least two sequenceElement elements are required to represent a concatenated sequence. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.concatenated.sequenceElement.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.concatenated.sequenceElement.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.concatenated.sequenceElement.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.sequence | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.concatenated.sequenceElement.sequence | ||||||||||||||||||||||||
Definition | The Molecular Sequence corresponding to this element. | ||||||||||||||||||||||||
Short Display | The Molecular Sequence corresponding to this element | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.concatenated.sequenceElement.ordinalIndex | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.concatenated.sequenceElement.ordinalIndex | ||||||||||||||||||||||||
Definition | The ordinal position of this sequence element within the concatenated Molecular Sequence. | ||||||||||||||||||||||||
Short Display | The ordinal position of this sequence element within the concatenated Molecular Sequence | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Comments | 0 or 1 based indices are possible, could potentially skip numbers in the sequence, suggest implementers sort numerically prior to concatenating | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative | ||||||||||||||||||||||||
Definition | A Molecular Definition that is represented as an ordered series of edits on a specified starting sequence. | ||||||||||||||||||||||||
Short Display | A Molecular Definition that is represented as an ordered series of edits on a specified starting sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.relative.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.startingMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.startingMolecule | ||||||||||||||||||||||||
Definition | The Molecular Sequence that serves as the starting sequence, on which edits will be applied. | ||||||||||||||||||||||||
Short Display | The Molecular Sequence that serves as the starting sequence, on which edits will be applied | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.edit | ||||||||||||||||||||||||
Definition | An edit (change) made to a sequence. | ||||||||||||||||||||||||
Short Display | An edit (change) made to a sequence | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | BackboneElement | ||||||||||||||||||||||||
Comments | Edits are applied sequentially. The sequence that results from one edit operation is used as the 'starting' sequence of the next edit operation. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.id | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.edit.id | ||||||||||||||||||||||||
Definition | Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces. | ||||||||||||||||||||||||
Short Display | Unique id for inter-element referencing | ||||||||||||||||||||||||
Cardinality | 0..1 This element is affected by the following invariants: ele-1 | ||||||||||||||||||||||||
Type | string | ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.extension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.edit.extension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. | ||||||||||||||||||||||||
Short Display | Additional content defined by implementations | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Alternate Names | extensions, user content | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.modifierExtension | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.edit.modifierExtension | ||||||||||||||||||||||||
Definition | May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself). | ||||||||||||||||||||||||
Short Display | Extensions that cannot be ignored even if unrecognized | ||||||||||||||||||||||||
Cardinality | 0..* | ||||||||||||||||||||||||
Type | Extension | ||||||||||||||||||||||||
Is Modifier | true (Reason: Modifier extensions are expected to modify the meaning or interpretation of the element that contains them) | ||||||||||||||||||||||||
Requirements | Modifier extensions allow for extensions that cannot be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the definition of modifier extensions. | ||||||||||||||||||||||||
Alternate Names | extensions, user content, modifiers | ||||||||||||||||||||||||
Comments | There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone. | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.editOrder | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.edit.editOrder | ||||||||||||||||||||||||
Definition | The order of this edit, relative to other edits on the starting sequence. | ||||||||||||||||||||||||
Short Display | The order of this edit, relative to other edits on the starting sequence | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.coordinateSystem | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.edit.coordinateSystem | ||||||||||||||||||||||||
Definition | The coordinate system used to define the edited intervals on the starting sequence. Coordinate systems are usually 0- or 1-based. | ||||||||||||||||||||||||
Short Display | The coordinate system used to define the edited intervals on the starting sequence. Coordinate systems are usually 0- or 1-based | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Terminology Binding | Genomic coordinate system. The codes SHALL be taken from http://loinc.org/LL5323-2/ ; other codes may be used where these codes are not suitable | ||||||||||||||||||||||||
Type | CodeableConcept | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.start | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.edit.start | ||||||||||||||||||||||||
Definition | The start coordinate of the interval that will be edited. | ||||||||||||||||||||||||
Short Display | The start coordinate of the interval that will be edited | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
| ||||||||||||||||||||||||
MolecularDefinition.representation.relative.edit.end | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.edit.end | ||||||||||||||||||||||||
Definition | The end coordinate of the interval that will be edited. | ||||||||||||||||||||||||
Short Display | The end coordinate of the interval that will be edited | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | integer | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.representation.relative.edit.replacementMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.edit.replacementMolecule | ||||||||||||||||||||||||
Definition | The sequence that defines the replacement sequence used in the edit operation. | ||||||||||||||||||||||||
Short Display | The sequence that defines the replacement sequence used in the edit operation | ||||||||||||||||||||||||
Cardinality | 1..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
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MolecularDefinition.representation.relative.edit.replacedMolecule | |||||||||||||||||||||||||
Element Id | MolecularDefinition.representation:AlternativeState.relative.edit.replacedMolecule | ||||||||||||||||||||||||
Definition | The sequence on the 'starting' sequence for the edit operation, defined by the specified interval, that will be replaced during the edit. | ||||||||||||||||||||||||
Short Display | The sequence on the 'starting' sequence for the edit operation, defined by the specified interval, that will be replaced during the edit | ||||||||||||||||||||||||
Cardinality | 0..1 | ||||||||||||||||||||||||
Type | Reference(MolecularDefinition) | ||||||||||||||||||||||||
Invariants |
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