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Example MolecularDefinition/example-variation-cyp2c19-991-hgvs (Turtle)
Raw Turtle (+ also see Turtle/RDF Format Specification)
Example of Variation profile of CYP2C19 at Position 991 as HGVS
@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
[a fhir:MolecularDefinition ;
fhir:nodeRole fhir:treeRoot ;
fhir:id [ fhir:v "example-variation-cyp2c19-991-hgvs"] ; #
fhir:meta [
fhir:profile ( [
fhir:v "http://hl7.org/fhir/StructureDefinition/variation"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/variation>
] )
] ; #
fhir:type [ fhir:v "dna"] ; #
fhir:location ( [
fhir:sequenceLocation [
fhir:sequenceContext [
fhir:reference [ fhir:v "MolecularDefinition/example-sequence-nm0007694-url" ] ;
fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
fhir:display [ fhir:v "Starting Sequence Resource: (CYP2C19), mRNA, NM_000769.4" ]
] ;
fhir:coordinateInterval [
fhir:numberingSystem [
fhir:coding ( [
a loinc:LA30100-4 ;
fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "LA30100-4" ] ;
fhir:display [ fhir:v "0-based interval counting" ]
] ) ;
fhir:text [ fhir:v "0-based interval counting" ]
] ;
fhir:start [
a fhir:Quantity ;
fhir:value [ fhir:v "1015"^^xsd:decimal ]
] ;
fhir:end [
a fhir:Quantity ;
fhir:value [ fhir:v "1016"^^xsd:decimal ]
]
]
]
] ) ; #
fhir:representation ( [
fhir:focus [
fhir:coding ( [
fhir:system [ fhir:v "http://hl7.org/fhir/moleculardefinition-focus"^^xsd:anyURI ] ;
fhir:code [ fhir:v "reference-state" ] ;
fhir:display [ fhir:v "Reference State" ]
] )
] ;
fhir:code ( [
fhir:coding ( [
fhir:system [ fhir:v "http://varnomen.hgvs.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "NM_000769.4:c.991A>G" ] ;
fhir:display [ fhir:v "NM_000769.4:c.991A>G" ]
] )
] ) ;
fhir:literal [
fhir:value [ fhir:v "A" ]
]
] [
fhir:focus [
fhir:coding ( [
fhir:system [ fhir:v "http://hl7.org/fhir/moleculardefinition-focus"^^xsd:anyURI ] ;
fhir:code [ fhir:v "alternative-state" ] ;
fhir:display [ fhir:v "Alternative State" ]
] )
] ;
fhir:code ( [
fhir:coding ( [
fhir:system [ fhir:v "http://varnomen.hgvs.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "NM_000769.4:c.991A>G" ] ;
fhir:display [ fhir:v "NM_000769.4:c.991A>G" ]
] )
] ) ;
fhir:literal [
fhir:value [ fhir:v "G" ]
]
] )] . # <representation>
# <code>
# <coding>
# <system value="http://varnomen.hgvs.org"/>
# <code value="NM_000769.4:c.991A>G"/>
# <display value="NM_000769.4:c.991A>G"/>
# </coding>
# </code>
# <literal>
# <value value="A"/>
# </literal>
# </representation>
# -------------------------------------------------------------------------------------
Usage note: every effort has been made to ensure that the
examples are correct and useful, but they are not a normative part
of the specification.