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Example MolecularDefinition/example-allelesliced-hla00381 (Turtle)

Clinical Genomics Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: No defined compartments

Raw Turtle (+ also see Turtle/RDF Format Specification)

Example of Allele including slices for HLA00381

@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/MolecularDefinition/example-allelesliced-hla00381> a fhir:MolecularDefinition ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "example-allelesliced-hla00381"] ; # 
  fhir:moleculeType [
     fhir:coding ( [
       fhir:system [ fhir:v "http://hl7.org/fhir/sequence-type"^^xsd:anyURI ] ;
       fhir:code [ fhir:v "dna" ] ;
       fhir:display [ fhir:v "DNA Sequence" ]
     ] )
  ] ; # 
  fhir:location ( [
     fhir:sequenceLocation [
       fhir:sequenceContext [
         fhir:link <http://hl7.org/fhir/MolecularDefinition/example-sequence-af1961831-url> ;
         fhir:reference [ fhir:v "MolecularDefinition/example-sequence-af1961831-url" ] ;
         fhir:type [ fhir:v "MolecularDefinition"^^xsd:anyURI ] ;
         fhir:display [ fhir:v "Starting Sequence Resource: Homo sapiens MHC class I antigen (HLA-B) gene" ]
       ] ;
       fhir:coordinateInterval [
         fhir:coordinateSystem [
           fhir:system [
             fhir:coding ( [
               a loinc:LA30102-0 ;
               fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
               fhir:code [ fhir:v "LA30102-0" ] ;
               fhir:display [ fhir:v "1-based character counting" ]
             ] ) ;
             fhir:text [ fhir:v "1-based character counting" ]
           ]
         ] ;
         fhir:start [
           a fhir:Quantity ;
           fhir:value [ fhir:v "1"^^xsd:decimal ]
         ] ;
         fhir:end [
           a fhir:Quantity ;
           fhir:value [ fhir:v "920"^^xsd:decimal ]
         ]
       ]
     ]
  ] ) ; # 
  fhir:representation ( [
     fhir:focus [
       fhir:coding ( [
         fhir:code [ fhir:v "allele-state" ] ;
         fhir:display [ fhir:v "Allele State" ]
       ] )
     ] ;
     fhir:code ( [
       fhir:coding ( [
         fhir:system [ fhir:v "https://www.ebi.ac.uk/ipd/imgt/hla/alleles/allele/"^^xsd:anyURI ] ;
         fhir:code [ fhir:v "HLA00381" ] ;
         fhir:display [ fhir:v "B*57:01:01:01" ]
       ] )
     ] )
  ] ) . # 

<http://hl7.org/fhir/MolecularDefinition/example-sequence-af1961831-url> a fhir:MolecularDefinition .

# -------------------------------------------------------------------------------------


Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.