Allergyintolerance.shex

ShEx statement for allergyintolerance

PREFIX fhir: <http://hl7.org/fhir/> 
PREFIX fhirvs: <http://hl7.org/fhir/ValueSet/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> 
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> 

IMPORT <Age.shex>
IMPORT <code.shex>
IMPORT <Range.shex>
IMPORT <Period.shex>
IMPORT <string.shex>
IMPORT <Patient.shex>
IMPORT <dateTime.shex>
IMPORT <Reference.shex>
IMPORT <Encounter.shex>
IMPORT <Identifier.shex>
IMPORT <Annotation.shex>
IMPORT <Organization.shex>
IMPORT <Practitioner.shex>
IMPORT <RelatedPerson.shex>
IMPORT <DomainResource.shex>
IMPORT <CodeableConcept.shex>
IMPORT <BackboneElement.shex>
IMPORT <PractitionerRole.shex>
IMPORT <CodeableReference.shex>

start=@<AllergyIntolerance> AND {fhir:nodeRole [fhir:treeRoot]}

# Allergy or Intolerance (generally: Risk of adverse reaction to a substance)
<AllergyIntolerance> EXTENDS @<DomainResource> CLOSED {   
    a [fhir:AllergyIntolerance]?;fhir:nodeRole [fhir:treeRoot]?;

    fhir:identifier @<OneOrMore_Identifier>?;  # External ids for this item
    fhir:clinicalStatus @<CodeableConcept>?;  # active | inactive | resolved
    fhir:verificationStatus @<CodeableConcept>?;  # unconfirmed | presumed | confirmed 
                                            # | refuted | entered-in-error 
    fhir:type @<CodeableConcept>?;          # allergy | intolerance - Underlying 
                                            # mechanism (if known) 
    fhir:category @<OneOrMore_code> AND
    	{fhir:v @fhirvs:allergy-intolerance-category}?;  # food | medication | environment | 
                                            # biologic 
    fhir:criticality @<code> AND
    	{fhir:v @fhirvs:allergy-intolerance-criticality}?;  # low | high | unable-to-assess
    fhir:code @<CodeableConcept>?;          # Code that identifies the allergy 
                                            # or intolerance 
    fhir:patient @<Reference> AND {fhir:link 
    			@<Patient> ? };  # Who the allergy or intolerance is 
                                            # for 
    fhir:encounter @<Reference> AND {fhir:link 
    			@<Encounter> ? }?;  # Encounter when the allergy or 
                                            # intolerance was asserted 
    fhir:onset @<dateTime>  OR 
    			@<Age>  OR 
    			@<Period>  OR 
    			@<Range>  OR 
    			@<string>  ?;  # When allergy or intolerance was 
                                            # identified 
    fhir:recordedDate @<dateTime>?;         # Date allergy or intolerance was 
                                            # first recorded 
    fhir:recorder @<Reference> AND {fhir:link 
    			@<Organization> OR 
    			@<Patient> OR 
    			@<Practitioner> OR 
    			@<PractitionerRole> OR 
    			@<RelatedPerson> ? }?;  # Who recorded the sensitivity
    fhir:asserter @<Reference> AND {fhir:link 
    			@<Patient> OR 
    			@<Practitioner> OR 
    			@<PractitionerRole> OR 
    			@<RelatedPerson> ? }?;  # Source of the information about 
                                            # the allergy 
    fhir:lastReactionOccurrence @<dateTime>?;  # Date(/time) of last known 
                                            # occurrence of a reaction 
    fhir:note @<OneOrMore_Annotation>?;     # Additional text not captured in 
                                            # other fields 
    fhir:reaction @<OneOrMore_AllergyIntolerance.reaction>?;  # Adverse Reaction Events linked to 
                                            # exposure to substance 
}  

# Adverse Reaction Events linked to exposure to substance
<AllergyIntolerance.reaction> EXTENDS @<BackboneElement> CLOSED {   
    fhir:substance @<CodeableConcept>?;     # Specific substance or 
                                            # pharmaceutical product considered 
                                            # to be responsible for event 
    fhir:manifestation @<OneOrMore_CodeableReference>;  # Clinical symptoms/signs associated 
                                            # with the Event 
    fhir:description @<string>?;            # Description of the event as a whole
    fhir:onset @<dateTime>?;                # Date(/time) when manifestations 
                                            # showed 
    fhir:severity @<code> AND
    	{fhir:v @fhirvs:reaction-event-severity}?;  # mild | moderate | severe (of event 
                                            # as a whole) 
    fhir:exposureRoute @<CodeableConcept>?;  # How the subject was exposed to the 
                                            # substance 
    fhir:note @<OneOrMore_Annotation>?;     # Text about event not captured in 
                                            # other fields 
}  

#---------------------- Cardinality Types (OneOrMore) -------------------
<OneOrMore_Identifier> CLOSED {
    rdf:first @<Identifier>  ;
    rdf:rest [rdf:nil] OR @<OneOrMore_Identifier> 
}
<OneOrMore_code> CLOSED {
    rdf:first @<code>  ;
    rdf:rest [rdf:nil] OR @<OneOrMore_code> 
}
<OneOrMore_Annotation> CLOSED {
    rdf:first @<Annotation>  ;
    rdf:rest [rdf:nil] OR @<OneOrMore_Annotation> 
}
<OneOrMore_AllergyIntolerance.reaction> CLOSED {
    rdf:first @<AllergyIntolerance.reaction>  ;
    rdf:rest [rdf:nil] OR @<OneOrMore_AllergyIntolerance.reaction> 
}
<OneOrMore_CodeableReference> CLOSED {
    rdf:first @<CodeableReference>  ;
    rdf:rest [rdf:nil] OR @<OneOrMore_CodeableReference> 
}

#---------------------- Value Sets ------------------------

# Category of an identified substance associated with allergies or intolerances.
fhirvs:allergy-intolerance-category ["food" "medication" "environment" "biologic"]

# Estimate of the potential clinical harm, or seriousness, of a reaction to an identified substance.
fhirvs:allergy-intolerance-criticality ["low" "high" "unable-to-assess"]

# Clinical assessment of the severity of a reaction event as a whole, potentially considering multiple different manifestations.
fhirvs:reaction-event-severity ["mild" "moderate" "severe"]