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Sequence-graphic-example-3.xml

Clinical Genomics Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Patient

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MolecularSequence Graphic example-3 (id = "graphic-example-3")

<?xml version="1.0" encoding="UTF-8"?>

<MolecularSequence xmlns="http://hl7.org/fhir">
    <id value="graphic-example-3"/> 
    <text> <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative with Details</b> </p> <p> <b> id</b> : graphic-example-3</p> <p> <b> type</b> : dna</p> <p> <b> coordinateSystem</b> : 0</p> <h3> ReferenceSeqs</h3> <table> <tr> <td> -</td> <td> <b> ReferenceSeqPointer</b> </td> <td> <b> Strand</b> </td> <td> <b> WindowStart</b> </td> <td> <b> WindowEnd</b> </td> </tr> <tr> <td> *</td> <td> <a> MolecularSequence/graphic-example-5</a> </td> <td> watson</td> <td> 128273732</td> <td> 128273736</td> </tr> </table> <h3> Variants</h3> <table> <tr> <td> -</td> <td> <b> Start</b> </td> <td> <b> End</b> </td> <td> <b> ObservedAllele</b> </td> <td> <b> ReferenceAllele</b> </td> <td> <b> Cigar</b> </td> </tr> <tr> <td> *</td> <td> 1282737234</td> <td> 128273736</td> <td> GA</td> <td> AT</td> <td> 2M</td> </tr> </table> <p> <b> pointer</b> : <a> MolecularSequence/graphic-example-4</a> </p> </div> </text> <type value="dna"/> 
    <coordinateSystem value="0"/> 
     <referenceSeq> 
        <referenceSeqPointer> 
          <reference value="MolecularSequence/graphic-example-5"/> 
        </referenceSeqPointer> 
        <strand value="watson"/> 
        <windowStart value="128273732"/> 
        <windowEnd value="128273736"/> 
    </referenceSeq> 
    <variant> 
        <start value="1282737234"/> 
        <end value="128273736"/> 
        <observedAllele value="GA"/> 
        <referenceAllele value="AT"/> 
        <cigar value="2M"/> 
    </variant> 
    <pointer> 
        <reference value="MolecularSequence/graphic-example-4"/> 
    </pointer> 
</MolecularSequence> 

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.