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Sequence-graphic-example-1.json

Clinical Genomics Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Patient

Raw JSON (canonical form + also see JSON Format Specification)

MolecularSequence Graphic example-1

{
  "resourceType": "MolecularSequence",
  "id": "graphic-example-1",
  "text": {
    "status": "generated",
    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: graphic-example-1</p><p><b>type</b>: dna</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqId</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>NC_000002.12 <span>(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NC_000002.12' = 'NC_000002.12)</span></td><td>watson</td><td>128273724</td><td>128273732</td></tr></table><h3>Variants</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td><td><b>Cigar</b></td></tr><tr><td>*</td><td>128273725</td><td>128273726</td><td>G</td><td>T</td><td>1M</td></tr></table><p><b>pointer</b>: <a>MolecularSequence/graphic-example-2</a></p></div>"
  },
  "type": "dna",
  "coordinateSystem": 0,
  "referenceSeq": {
    "referenceSeqId": {
      "coding": [
        {
          "system": "http://www.ncbi.nlm.nih.gov/nuccore",
          "code": "NC_000002.12"
        }
      ]
    },
    "strand": "watson",
    "windowStart": 128273724,
    "windowEnd": 128273732
  },
  "variant": [
    {
      "start": 128273725,
      "end": 128273726,
      "observedAllele": "G",
      "referenceAllele": "T",
      "cigar": "1M"
    }
  ],
  "pointer": [
    {
      "reference": "MolecularSequence/graphic-example-2"
    }
  ]
}

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.