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Observation-example-diplotype1.xml

Orders and Observations Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Device, Encounter, Patient, Practitioner, RelatedPerson

Raw XML (canonical form + also see XML Format Specification)

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Example of diplotype data (with haplotypes observation as reference) (id = "example-diplotype1")

<?xml version="1.0" encoding="UTF-8"?>

<Observation xmlns="http://hl7.org/fhir">
  <id value="example-diplotype1"/> 
  <text> <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative with Details</b> </p> <p> <b> id</b> : example-diplotype1</p> <p> <b> status</b> : final</p> <p> <b> code</b> : Diplotype Call <span> (Details : {SNOMED CT code '363779003' = 'Genotype determination', given as 'Genotype
           determination'})</span> </p> <p> <b> subject</b> : <a> J*********** C***********</a> </p> <p> <b> issued</b> : Apr 3, 2013 3:30:10 PM</p> <p> <b> specimen</b> : <a> Molecular Specimen ID: MLD45-Z4-1234</a> </p> <p> <b> derivedFrom</b> : </p> <ul> <li> <a> Observation/example-haplotype1</a> </li> <li> <a> Observation/example-haplotype2</a> </li> </ul> </div> </text> <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGene">
    <valueCodeableConcept> 
      <coding> 
        <system value="http://www.genenames.org"/> 
        <code value="2623"/> 
        <display value="CYP2C9"/> 
      </coding> 
    </valueCodeableConcept> 
  </extension> 
  <status value="final"/> 
  <code> 
    <coding> 
      <system value="http://snomed.info/sct"/> 
      <code value="363779003"/> 
      <display value="Genotype determination"/> 
    </coding> 
    <text value="Diplotype Call"/> 
  </code> 
  <subject> 
    <reference value="Patient/727127"/> 
    <display value="J*********** C***********"/> 
  </subject> 
  <issued value="2013-04-03T15:30:10+01:00"/> 
  <specimen> 
    <reference value="Specimen/genetics-example1-somatic"/> 
    <display value="Molecular Specimen ID: MLD45-Z4-1234"/> 
  </specimen> 
  <derivedFrom> 
    <reference value="Observation/example-haplotype1"/> 
  </derivedFrom> 
  <derivedFrom> 
    <reference value="Observation/example-haplotype2"/> 
  </derivedFrom> 
</Observation> 

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.