Moleculardefinition-example-starting-sequence-2b-extracted.xml

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Example MolecularDefinition/example-starting-sequence-2b-extracted (XML)

Clinical Genomics Work Group

Maturity Level: N/A

Standards Status: Informative

Compartments: No defined compartments

Raw XML (canonical form + also see XML Format Specification)

Simple Sequence example to be extracted (id = "example-starting-sequence-2b-extracted")

<?xml version="1.0" encoding="UTF-8"?>

<MolecularDefinition xmlns="http://hl7.org/fhir">
  <id value="example-starting-sequence-2b-extracted"/> 
  <meta> 
    <profile value="http://hl7.org/fhir/StructureDefinition/sequence"/> 
  </meta> 
  <type value="dna"/> 
  <!--      <subject>
            <reference value="Patient/example"/>
        </subject>  -->
  <!--      <formatted>
            <contentType value="application/json"/>
            <url value="http://grch37.rest.ensembl.org/ga4gh/variants/3:rs1333049?content-typ
  e=application/json"/>
            <title value="GA4GH API"/>
        </formatted>  -->
  <representation> 
    <!--      <encoding>
            <coding>
                <system value="http://terminology.hl7.org/CodeSystem/..."/>
                <code value=""/>
                <display value=""/>
            </coding>
            <text value=""/>
        </encoding>  -->
    <literal> 
      <value value="ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC        
               TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA
                       GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG
                       AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG
                       CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT
                       GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG
                       ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA
                       AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG
                       TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC
                       AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA
                       GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGAGCCTGTACAGACAGTT
                       AATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA"/> 
    </literal> 
  </representation> 
</MolecularDefinition>

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.