INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/hl7ch/ch-lab-order --branch develop repo DEBUG:root:Time to deadline 35879.998158 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35875.266577 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35873.946997 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7ch/ch-lab-order/ -out /scratch/repo DEBUG:root:Time to deadline 35866.947478 seconds FHIR IG Publisher Version 2.0.21 (Git# e2ed3297ec93). Built 2025-10-14T00:25:09.351Z (5 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7ch/ch-lab-order/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Sunday, October 19, 2025, 2:19:54 PM Coordinated Universal Time (2025-10-19T14:19:54Z) Build FHIR IG from /scratch/repo (00:00.025 / 00:00.026, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.028, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.032, 97Mb) Found dependency on ch.fhir.ig.ch-core#current in Sushi config. Pre-installing (00:00.003 / 00:00.035, 97Mb) Installing ch.fhir.ig.ch-core#current to the package cache  Fetching:  Installing ch.fhir.ig.ch-core#current  done. Found dependency on ch.fhir.ig.ch-term#current in Sushi config. Pre-installing (00:01.932 / 00:01.967, 71Mb) Installing ch.fhir.ig.ch-term#current to the package cache  Fetching:  Installing ch.fhir.ig.ch-term#current  done. Found dependency on hl7.terminology.r4#6.5.0 in Sushi config. Pre-installing (00:00.262 / 00:02.230, 79Mb) Installing hl7.terminology.r4#6.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.5.0  done. Found dependency on ch.fhir.ig.ch-orf#current in Sushi config. Pre-installing (00:02.117 / 00:04.348, 215Mb) Installing ch.fhir.ig.ch-orf#current to the package cache  Fetching:  Installing ch.fhir.ig.ch-orf#current  done. Found dependency on hl7.fhir.uv.order-catalog#0.1.0 in Sushi config. Pre-installing (00:00.445 / 00:04.793, 223Mb) Installing hl7.fhir.uv.order-catalog#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.order-catalog#0.1.0  done. Run Sushi on /scratch/repo (00:00.882 / 00:05.676, 231Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.740 / 00:06.416, 247Mb) Sushi: info Arguments: (00:00.000 / 00:06.416, 247Mb) Sushi: info --require-latest (00:00.000 / 00:06.417, 247Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:06.417, 247Mb) Sushi: info /scratch/repo (00:00.000 / 00:06.417, 247Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.769 / 00:07.187, 247Mb) Sushi: info Importing FSH text... (00:00.153 / 00:07.340, 247Mb) Sushi: info Preprocessed 224 documents with 53 aliases. (00:01.455 / 00:08.795, 247Mb) Sushi: info Imported 35 definitions and 280 instances. (00:00.210 / 00:09.006, 247Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.163 / 00:09.169, 247Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.711 / 00:09.880, 247Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:09.882, 247Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.788 / 00:10.670, 247Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.002 / 00:10.673, 247Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.085 / 00:10.759, 247Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.435 / 00:11.194, 247Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:11.195, 247Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.529 / 00:12.724, 247Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:12.725, 247Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.398 / 00:13.124, 247Mb) Sushi: info Loaded ch.fhir.ig.ch-core#current with 74 resources (00:00.131 / 00:13.256, 247Mb) Sushi: info Loaded ch.fhir.ig.ch-term#current with 142 resources (00:00.225 / 00:13.481, 247Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.745 / 00:15.226, 247Mb) Sushi: info Loaded ch.fhir.ig.ch-orf#current with 49 resources (00:00.094 / 00:15.321, 247Mb) Sushi: info Loaded hl7.fhir.uv.order-catalog#0.1.0 with 29 resources (00:00.023 / 00:15.345, 247Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:15.345, 247Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.208 / 00:18.554, 247Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:18.556, 247Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.536 / 00:20.092, 247Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.016 / 00:20.108, 247Mb) Sushi: info Converting FSH to FHIR resources... (00:00.033 / 00:20.142, 247Mb) Sushi: info Converted 20 FHIR StructureDefinitions. (00:02.371 / 00:22.513, 247Mb) Sushi: info Converted 4 FHIR CodeSystems. (00:00.289 / 00:22.802, 247Mb) Sushi: info Converted 11 FHIR ValueSets. (00:00.936 / 00:23.739, 247Mb) Sushi: info Converted 280 FHIR instances. (01:18.839 / 01:42.578, 247Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 01:42.579, 247Mb) Sushi: info Exported 303 FHIR resources as JSON. (00:00.377 / 01:42.956, 247Mb) Sushi: info Assembling Implementation Guide sources... (00:00.011 / 01:42.967, 247Mb) Sushi: info Generated ImplementationGuide-ch.fhir.ig.ch-lab-order.json (00:00.057 / 01:43.025, 247Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 01:43.025, 247Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 01:43.026, 247Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:43.027, 247Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 01:43.027, 247Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:43.027, 247Mb) Sushi: | | 16 | 4 | 0 | 0 | | (00:00.000 / 01:43.027, 247Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:43.027, 247Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:43.028, 247Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 01:43.028, 247Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:43.028, 247Mb) Sushi: | | 11 | 4 | 280 | | (00:00.000 / 01:43.028, 247Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:43.028, 247Mb) Sushi: | | (00:00.000 / 01:43.029, 247Mb) Sushi: =================================================================== (00:00.000 / 01:43.029, 247Mb) Sushi: | It doesn't get any betta than this! 0 Errors 0 Warnings | (00:00.000 / 01:43.029, 247Mb) Sushi: =================================================================== (00:00.000 / 01:43.029, 247Mb) Root directory: /scratch/repo (00:00.030 / 01:43.060, 247Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.735 / 01:43.796, 63Mb) Load Template from ch.fhir.ig.template#current (00:00.706 / 01:44.502, 65Mb) Installing ch.fhir.ig.template#current to the package cache  Fetching:  Installing ch.fhir.ig.template#current  done.  Load Template from fhir.base.template#current (00:00.226 / 01:44.728, 72Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:04.814 / 01:49.543, 376Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 01:49.544, 376Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-1506909659147902137.html Connect to Terminology Server at http://tx.fhir.org (00:27.772 / 02:17.316, 588Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing ihe.formatcode.fhir#1.3.0 to the package cache  Fetching:  Installing ihe.formatcode.fhir#1.3.0  done. Installing hl7.terminology.r4#5.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.5.0  done. Load Package hl7.terminology.r4#5.5.0 Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Load Package ihe.formatcode.fhir#1.3.0 Installing hl7.terminology.r4#6.3.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.3.0  done. Load Package hl7.terminology.r4#6.3.0 Load Package ch.fhir.ig.ch-term#current Load Package hl7.terminology.r4#6.5.0 Installing hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1  done. Load Package hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1 Load Package ch.fhir.ig.ch-core#current Load Package ch.fhir.ig.ch-term#current Load Package hl7.terminology.r4#6.5.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:21.437 / 02:38.754, 916Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Load Package ch.fhir.ig.ch-orf#current Load Package hl7.fhir.uv.order-catalog#0.1.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:04.584 / 02:43.338, 2Gb) Load IG (00:00.000 / 02:43.338, 2Gb) Load Content (00:00.001 / 02:43.339, 2Gb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.209 / 02:43.549, 2Gb) Process Loaded Resources (00:08.876 / 02:52.425, 2Gb) Generating Snapshots (00:03.089 / 02:55.515, 940Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://fhir.ch/ig/ch-lab-order/package-list.json for version check (00:03.285 / 02:58.800, 1Gb) Processing Conformance Resources (00:00.772 / 02:59.572, 1Gb) Checking Language (00:00.000 / 02:59.572, 1Gb) Load Dependency Info (00:00.004 / 02:59.577, 1Gb) Load Info (00:00.002 / 02:59.580, 1Gb) Load Paths (00:00.001 / 02:59.581, 1Gb) Check R4 / R4B (00:00.002 / 02:59.583, 1Gb) Assign Comparison Ids (00:00.284 / 02:59.867, 1Gb) Propagating status (00:00.000 / 02:59.868, 1Gb) Generating Narratives (00:00.000 / 02:59.868, 1Gb) Validating Conformance Resources (00:20.486 / 03:20.354, 1Gb) Check profiles & code systems (01:08.181 / 04:28.536, 2Gb) Check realm rules (00:00.005 / 04:28.541, 2Gb) Previous Version Comparison (00:00.000 / 04:28.541, 2Gb) Installing ch.fhir.ig.ch-lab-order#3.0.0-ballot to the package cache  Fetching:  Installing ch.fhir.ig.ch-lab-order#3.0.0-ballot  done. Installing ch.fhir.ig.ch-core#6.0.0-ballot to the package cache  Fetching:  Installing ch.fhir.ig.ch-core#6.0.0-ballot  done. Installing ch.fhir.ig.ch-term#3.2.x to the package cache  Fetching:  Installing ch.fhir.ig.ch-term#3.2.0  done. Installing ch.fhir.ig.ch-orf#3.0.1 to the package cache  Fetching:  Installing ch.fhir.ig.ch-orf#3.0.1  done. Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Checking for Bundles to sign (00:53.531 / 05:22.073, 2Gb) Validating Resources (00:00.000 / 05:22.073, 2Gb) Processing Provenance Records (01:42.038 / 07:04.112, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 07:04.113, 2Gb) Generate Native Outputs (00:00.268 / 07:04.382, 2Gb) Run Template (00:31.569 / 07:35.951, 2Gb) Generate HTML Outputs (00:07.008 / 07:42.959, 2Gb) Generate Spreadsheets (01:15.429 / 08:58.389, 4Gb) Generate Summaries (00:07.948 / 09:06.337, 2Gb) Generating Summary Outputs (00:00.000 / 09:06.338, 2Gb) Table of contents has a section with more than 222 entries. Collapsing will not work reliably DB Cumulative Time invested: 00:00:24.479 Sending Usage Stats to Server (00:19.834 / 09:26.172, 7Gb) ## Memory (MB): Use = 7770, Free = 11237, Total = 19008, Max = 19008 (00:00.012 / 09:26.184, 7Gb) Reclaiming memory... (00:00.000 / 09:26.184, 7Gb) ## Memory (MB): Use = 1881, Free = 17126, Total = 19008, Max = 19008 (00:02.307 / 09:28.492, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 09:28.494, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.002 / 09:28.496, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 09:28.496, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 09:28.496, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.487 / 09:28.984, 1Gb) Jekyll: Generating... (00:00.000 / 09:28.984, 1Gb) Jekyll: done in 8.081 seconds. (00:08.080 / 09:37.065, 1Gb) Checking Output HTML (00:08.026 / 09:45.091, 6Gb) Processed /scratch/repo/output - % reduction = 95 (185795438 ==> 10120329) found 3650 files (00:08.206 / 09:53.297, 11Gb) ........................................ ........................................ ... 3650 html files, 0 pages invalid xhtml (0%) (01:26.505 / 11:19.803, 3Gb) ... 626760 links, 0 broken links (0%) (00:00.000 / 11:19.803, 3Gb) Generate fragment-usage-analysis.csv (00:00.000 / 11:19.803, 3Gb) Build final .zip (00:00.008 / 11:19.812, 3Gb) Final .zip built (00:07.044 / 11:26.856, 4Gb) Built. Times: loading: 00:16.233, generate: 08:35.859, narrative generation: 00:20.485, realm-rules: 00:00.000, previous-version: 00:53.467, jekyll: 00:08.618, validation: 02:50.081 (#304), template: 00:07.017 (#3) (00:08.575 / 11:35.432, 5Gb) Generating QA (00:00.000 / 11:35.432, 5Gb) Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 0, Info: 377, Broken Links: 0 (00:00.841 / 11:36.274, 5Gb) Finished @ 10/19/25, 2:31 PM. Max Memory Used = 11Gb (00:00.083 / 11:36.357, 5Gb)