INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/hl7au/au-fhir-base --branch master repo DEBUG:root:Time to deadline 35879.998006 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35874.612132 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35872.539348 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.7.0 npm notice Changelog: npm notice Run `npm install -g npm@11.7.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7au/au-fhir-base/ -out /scratch/repo DEBUG:root:Time to deadline 35865.544745 seconds FHIR IG Publisher Version 2.0.29 (Git# 826a7eb003d6). Built 2025-12-17T01:19:30.102Z (32 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7au/au-fhir-base/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Sunday, January 18, 2026, 9:39:42 PM Coordinated Universal Time (2026-01-18T21:39:42Z) Build FHIR IG from /scratch/repo (00:00.026 / 00:00.026, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.029, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.032, 97Mb) Root directory: /scratch/repo (00:00.010 / 00:00.042, 97Mb) Load Template from hl7.au.fhir.template#current (00:01.518 / 00:01.561, 78Mb) Installing hl7.au.fhir.template#current to the package cache  Fetching:  Installing hl7.au.fhir.template#current  done.  Load Template from hl7.au.base.template#current (00:01.904 / 00:03.465, 150Mb) Installing hl7.au.base.template#current to the package cache  Fetching:  Installing hl7.au.base.template#current  done.  Load Template from fhir.base.template#current (00:00.193 / 00:03.659, 150Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:05.153 / 00:08.812, 173Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:08.813, 173Mb) Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Running Terminology Log: /tmp/ohfu-fhir-ig-4865481505918919941.html Connect to Terminology Server at http://tx.fhir.org (00:56.399 / 01:05.213, 677Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r4#7.0.1 to the package cache  Fetching:  Installing hl7.terminology.r4#7.0.1  done. Load Package hl7.terminology.r4#7.0.1 Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.fhir.uv.tools.r4#0.9.0 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.9.0  done. Load Package hl7.fhir.uv.tools.r4#0.9.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Cannot find or generate snapshot for base definition http://hl7.org/fhir/StructureDefinition/CanonicalResource from http://hl7.org/fhir/StructureDefinition/TestCases Initialization complete (00:58.368 / 02:03.582, 882Mb) Load IG (00:00.000 / 02:03.582, 882Mb) Load Content (00:00.004 / 02:03.587, 885Mb) Using en_AU as the default narrative language. (inferred from ImplementationGuide.jurisdiction=AU) (00:00.187 / 02:03.775, 906Mb) Process Loaded Resources (00:06.247 / 02:10.023, 740Mb) Generating Snapshots (00:02.040 / 02:12.063, 590Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org.au/fhir/package-list.json for version check (00:03.930 / 02:15.993, 890Mb) Checking Language (00:00.448 / 02:16.441, 906Mb) Load Dependency Info (00:00.007 / 02:16.449, 914Mb) Load Info (00:00.002 / 02:16.452, 914Mb) Load Paths (00:00.001 / 02:16.454, 919Mb) Check R4 / R4B (00:00.001 / 02:16.455, 919Mb) Assign Comparison Ids (00:00.099 / 02:16.555, 938Mb) Propagating status (00:00.000 / 02:16.555, 938Mb) Generating Narratives (00:00.128 / 02:16.684, 1010Mb) Validating Conformance Resources (00:42.163 / 02:58.847, 655Mb) Check profiles & code systems (00:28.235 / 03:27.083, 1Gb) Check realm rules (00:00.012 / 03:27.095, 1Gb) Previous Version Comparison (00:00.000 / 03:27.096, 1Gb) Installing hl7.fhir.au.base#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.au.base#5.0.0  done. Installing hl7.terminology.r4#6.1.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.1.0  done. Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Checking for Bundles to sign (00:53.738 / 04:20.834, 1Gb) Validating Resources (00:00.000 / 04:20.835, 1Gb) Processing Provenance Records (01:55.585 / 06:16.420, 1Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 06:16.421, 1Gb) Generate Native Outputs (00:00.368 / 06:16.790, 1Gb) Run Template (00:16.679 / 06:33.469, 3Gb) Generate HTML Outputs (00:02.114 / 06:35.583, 4Gb) Generate Spreadsheets (00:54.071 / 07:29.654, 1Gb) Generate Summaries (00:11.415 / 07:41.070, 4Gb) Generating Summary Outputs (00:00.000 / 07:41.070, 4Gb) Table of contents has a section with more than 222 entries. Collapsing will not work reliably DB Cumulative Time invested: 00:00:11.0 Sending Usage Stats to Server (00:16.130 / 07:57.200, 1Gb) ## Memory (MB): Use = 1263, Free = 17744, Total = 19008, Max = 19008 (00:00.018 / 07:57.219, 1Gb) Reclaiming memory... (00:00.000 / 07:57.219, 1Gb) ## Memory (MB): Use = 1057, Free = 17950, Total = 19008, Max = 19008 (00:01.598 / 07:58.818, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.007 / 07:58.825, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 07:58.825, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 07:58.826, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 07:58.826, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.766 / 07:59.592, 1Gb) Jekyll: Generating... (00:00.000 / 07:59.593, 1Gb) Jekyll: done in 25.64 seconds. (00:25.639 / 08:25.232, 1Gb) Checking Output HTML (00:07.621 / 08:32.853, 4Gb) Processed /scratch/repo/output - % reduction = 99 (158022496 ==> 2058446) found 3959 files (00:08.524 / 08:41.377, 9Gb) ........................................ ........................................ ... 3959 html files, 0 pages invalid xhtml (0%) (01:20.817 / 10:02.195, 4Gb) ... 663693 links, 0 broken links (0%) (00:00.000 / 10:02.195, 4Gb) Generate fragment-usage-analysis.csv (00:00.000 / 10:02.195, 4Gb) Build final .zip (00:00.009 / 10:02.204, 4Gb) Final .zip built (00:06.570 / 10:08.774, 4Gb) Built. Times: loading: 00:12.854, generate: 07:55.341, propagating status: 00:00.127, narrative generation: 00:42.162, realm-rules: 00:00.000, previous-version: 00:53.648, jekyll: 00:26.465, validation: 02:23.051 (#276), template: 00:02.120 (#3) (00:03.008 / 10:11.783, 4Gb) Generating QA (00:00.000 / 10:11.783, 4Gb) Internal error in location for message: 'Error @1, 2: Found / expecting a token name', loc = '/scratch/repo/output/changes.html', err = 'The html source has duplicate anchor Ids: breakingchanges' Validation output in /scratch/repo/output/qa.html Errors: 2, Warnings: 35, Info: 2, Broken Links: 0 (00:00.757 / 10:12.541, 4Gb) Finished @ 18/1/26, 9:49 pm. Max Memory Used = 9Gb (00:00.066 / 10:12.608, 4Gb)