INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/hl7-eu/pcsp --branch master repo DEBUG:root:Time to deadline 35879.998028 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35877.472427 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35876.302174 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 6s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-eu/pcsp/ -out /scratch/repo DEBUG:root:Time to deadline 35869.804504 seconds FHIR IG Publisher Version 2.0.21 (Git# e2ed3297ec93). Built 2025-10-14T00:25:09.351Z (59 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-eu/pcsp/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Thursday, October 16, 2025, 12:02:24 PM Coordinated Universal Time (2025-10-16T12:02:24Z) Build FHIR IG from /scratch/repo (00:00.022 / 00:00.023, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.025, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.028, 97Mb) Found dependency on hl7.fhir.uv.extensions.r4#5.2.0 in Sushi config. Pre-installing (00:00.004 / 00:00.033, 97Mb) Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Found dependency on hl7.fhir.uv.ips#2.0.0 in Sushi config. Pre-installing (00:01.854 / 00:01.888, 97Mb) Installing hl7.fhir.uv.ips#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.ips#2.0.0  done. Found dependency on hl7.fhir.us.mcode#4.0.0 in Sushi config. Pre-installing (00:00.924 / 00:02.812, 113Mb) Installing hl7.fhir.us.mcode#4.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.mcode#4.0.0  done. Run Sushi on /scratch/repo (00:02.140 / 00:04.953, 136Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.580 / 00:05.533, 137Mb) Sushi: info Arguments: (00:00.000 / 00:05.534, 137Mb) Sushi: info --require-latest (00:00.000 / 00:05.534, 137Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:05.534, 137Mb) Sushi: info /scratch/repo (00:00.000 / 00:05.535, 137Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.575 / 00:06.110, 145Mb) Sushi: warn Configuration property resources has a value with an unexpected type. (00:00.127 / 00:06.237, 145Mb) Sushi: info Importing FSH text... (00:00.000 / 00:06.237, 145Mb) Sushi: info Preprocessed 56 documents with 59 aliases. (00:00.649 / 00:06.887, 145Mb) Sushi: info Imported 140 definitions and 57 instances. (00:00.407 / 00:07.294, 145Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.118 / 00:07.413, 145Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.530 / 00:07.944, 145Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:07.945, 145Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.799 / 00:08.745, 145Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.003 / 00:08.748, 145Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.056 / 00:08.804, 145Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.480 / 00:09.285, 145Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:09.285, 145Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.987 / 00:12.272, 145Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:12.274, 145Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.276 / 00:13.550, 145Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.313 / 00:13.864, 145Mb) Sushi: info Loaded hl7.fhir.uv.ips#2.0.0 with 74 resources (00:00.101 / 00:13.966, 145Mb) Sushi: info Loaded hl7.fhir.us.mcode#4.0.0 with 171 resources (00:00.076 / 00:14.042, 145Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:14.043, 145Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.411 / 00:17.455, 145Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.003 / 00:17.459, 145Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.095 / 00:18.554, 145Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.011 / 00:18.566, 145Mb) Sushi: info Converting FSH to FHIR resources... (00:00.018 / 00:18.585, 145Mb) Sushi: info Converted 68 FHIR StructureDefinitions. (00:10.226 / 00:28.811, 145Mb) Sushi: info Converted 7 FHIR CodeSystems. (00:00.131 / 00:28.943, 145Mb) Sushi: info Converted 65 FHIR ValueSets. (00:01.105 / 00:30.048, 145Mb) Sushi: info Converted 57 FHIR instances. (00:10.235 / 00:40.284, 145Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.017 / 00:40.301, 145Mb) Sushi: info Exported 184 FHIR resources as JSON. (00:00.279 / 00:40.580, 145Mb) Sushi: info Assembling Implementation Guide sources... (00:00.006 / 00:40.587, 145Mb) Sushi: info Generated ImplementationGuide-hl7.eu.fhir.pcsp.json (00:00.042 / 00:40.630, 145Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:40.630, 145Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.002 / 00:40.632, 145Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:40.632, 145Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:40.633, 145Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:40.633, 145Mb) Sushi: | | 38 | 16 | 14 | 0 | | (00:00.000 / 00:40.633, 145Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:40.633, 145Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:40.633, 145Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:40.633, 145Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:40.633, 145Mb) Sushi: | | 65 | 7 | 57 | | (00:00.000 / 00:40.634, 145Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:40.634, 145Mb) Sushi: | | (00:00.000 / 00:40.634, 145Mb) Sushi: =================================================================== (00:00.000 / 00:40.634, 145Mb) Sushi: | Let minnow if you need some help 0 Errors 1 Warning | (00:00.000 / 00:40.634, 145Mb) Sushi: =================================================================== (00:00.000 / 00:40.634, 145Mb) Root directory: /scratch/repo (00:00.040 / 00:40.675, 145Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.554 / 00:41.229, 57Mb) Load Template from #ig-template (00:00.513 / 00:41.743, 57Mb) Load Template from fhir.base.template#current (00:00.002 / 00:41.745, 57Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:03.633 / 00:45.379, 409Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.010 / 00:45.390, 409Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-3405519196125796222.html Connect to Terminology Server at http://tx.fhir.org (00:37.863 / 01:23.253, 859Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.fhir.uv.ipa#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.ipa#1.1.0  done. Installing hl7.terminology.r4#6.2.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.2.0  done. Load Package hl7.terminology.r4#6.2.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Load Package hl7.fhir.uv.ipa#1.1.0 Load Package hl7.fhir.uv.ips#2.0.0 Installing hl7.fhir.uv.genomics-reporting#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.genomics-reporting#2.0.0  done. Load Package hl7.fhir.uv.genomics-reporting#2.0.0 Installing hl7.fhir.us.core#6.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#6.1.0  done. Installing hl7.terminology.r4#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.0.0  done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#2.0.0  done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.1.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.1.0 Installing us.nlm.vsac#0.11.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.11.0  done. Load Package us.nlm.vsac#0.11.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:53.175 / 02:16.429, 473Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Installing us.cdc.phinvads#0.12.0 to the package cache  Fetching:  Installing us.cdc.phinvads#0.12.0  done. Load Package us.cdc.phinvads#0.12.0 Installing ihe.formatcode.fhir#1.1.0 to the package cache  Fetching:  Installing ihe.formatcode.fhir#1.1.0  done. Load Package ihe.formatcode.fhir#1.1.0 Load Package hl7.fhir.us.core#6.1.0 Load Package hl7.fhir.us.mcode#4.0.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:19.896 / 02:36.326, 1Gb) Load IG (00:00.000 / 02:36.326, 1Gb) Load Content (00:00.000 / 02:36.327, 1Gb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.218 / 02:36.546, 590Mb) Process Loaded Resources (00:02.598 / 02:39.144, 886Mb) Generating Snapshots (00:01.864 / 02:41.009, 968Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.eu/fhir/ig/pcsp/package-list.json for version check (00:04.393 / 02:45.403, 2Gb) Processing Conformance Resources (00:00.782 / 02:46.185, 2Gb) Checking Language (00:00.000 / 02:46.185, 2Gb) Load Dependency Info (00:00.004 / 02:46.190, 2Gb) Load Info (00:00.001 / 02:46.191, 2Gb) Load Paths (00:00.001 / 02:46.193, 2Gb) Check R4 / R4B (00:00.000 / 02:46.193, 2Gb) Assign Comparison Ids (00:00.104 / 02:46.298, 3Gb) Propagating status (00:00.000 / 02:46.298, 3Gb) Generating Narratives (00:00.000 / 02:46.298, 3Gb) Validating Conformance Resources (00:05.926 / 02:52.225, 1Gb) Check profiles & code systems (00:38.984 / 03:31.210, 3Gb) Check realm rules (00:00.012 / 03:31.222, 3Gb) Previous Version Comparison (00:00.000 / 03:31.222, 3Gb) Installing hl7.eu.fhir.pcsp#0.1.0 to the package cache  Fetching:  Installing hl7.eu.fhir.pcsp#0.1.0  done. Installing hl7.fhir.uv.ips#current to the package cache  Fetching:  Installing hl7.fhir.uv.ips#current  done. Installing hl7.fhir.us.mcode#current to the package cache  Fetching:  Installing hl7.fhir.us.mcode#current  done. Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Checking for Bundles to sign (01:00.430 / 04:31.653, 3Gb) Validating Resources (00:00.000 / 04:31.653, 3Gb) Processing Provenance Records (00:12.170 / 04:43.824, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 04:43.824, 2Gb) Generate Native Outputs (00:00.315 / 04:44.139, 2Gb) Run Template (00:22.177 / 05:06.317, 5Gb) Generate HTML Outputs (00:02.182 / 05:08.500, 6Gb) Generate Spreadsheets (00:55.330 / 06:03.830, 11Gb) Generate Summaries (00:10.894 / 06:14.724, 6Gb) Generating Summary Outputs (00:00.000 / 06:14.724, 6Gb) DB Cumulative Time invested: 00:00:32.657 Sending Usage Stats to Server (00:27.920 / 06:42.645, 7Gb) ## Memory (MB): Use = 7723, Free = 11284, Total = 19008, Max = 19008 (00:00.009 / 06:42.655, 7Gb) Reclaiming memory... (00:00.000 / 06:42.655, 7Gb) ## Memory (MB): Use = 2077, Free = 16930, Total = 19008, Max = 19008 (00:01.583 / 06:44.238, 2Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 06:44.240, 2Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 06:44.240, 2Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 06:44.240, 2Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 06:44.240, 2Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.420 / 06:44.661, 2Gb) Jekyll: Generating... (00:00.000 / 06:44.661, 2Gb) Jekyll: done in 6.614 seconds. (00:06.612 / 06:51.274, 2Gb) Checking Output HTML (00:06.637 / 06:57.911, 7Gb) Processed /scratch/repo/output - % reduction = 100 (224487720 ==> 2169818) found 3035 files (00:03.832 / 07:01.744, 2Gb) ........................................ ........................................ ... 3035 html files, 0 pages invalid xhtml (0%) (01:01.096 / 08:02.840, 2Gb) ... 939500 links, 14 broken links (0%) (00:00.000 / 08:02.840, 2Gb) Generate fragment-usage-analysis.csv (00:00.000 / 08:02.840, 2Gb) Build final .zip (00:00.009 / 08:02.850, 2Gb) Final .zip built (00:06.869 / 08:09.720, 2Gb) Built. Times: loading: 00:09.858, generate: 05:34.190, narrative generation: 00:05.925, realm-rules: 00:00.000, previous-version: 01:00.360, jekyll: 00:07.098, validation: 00:50.587 (#185), template: 00:02.190 (#3) (00:10.655 / 08:20.376, 4Gb) Generating QA (00:00.000 / 08:20.376, 4Gb) Validation output in /scratch/repo/output/qa.html Errors: 73, Warnings: 167, Info: 260, Broken Links: 14 (00:00.650 / 08:21.027, 4Gb) Finished @ 10/16/25, 12:10 PM. Max Memory Used = 11Gb (00:00.029 / 08:21.056, 4Gb)