INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/hl7-eu/base --branch master repo DEBUG:root:Time to deadline 35879.998061 seconds Cloning into 'repo'... Submodule '__r4-r5' (https://github.com/hl7-eu/base-multi-versions) registered for path '__r4-r5' Cloning into '/scratch/repo/__r4-r5'... Submodule path '__r4-r5': checked out 'c43f1bb35f34262e259981f6ab780a2d6c12fff2' DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35876.821307 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35875.550846 seconds npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.7.0 npm notice Changelog: npm notice Run `npm install -g npm@11.7.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-eu/base/ -out /scratch/repo DEBUG:root:Time to deadline 35868.406431 seconds FHIR IG Publisher Version 2.0.29 (Git# 826a7eb003d6). Built 2025-12-17T01:19:30.102Z (5 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-eu/base/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Monday, December 22, 2025, 8:18:42 AM Coordinated Universal Time (2025-12-22T08:18:42Z) Build FHIR IG from /scratch/repo (00:00.027 / 00:00.027, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.030, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.034, 97Mb) Found dependency on hl7.fhir.uv.ips#2.0.0 in Sushi config. Pre-installing (00:00.010 / 00:00.045, 97Mb) Installing hl7.fhir.uv.ips#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.ips#2.0.0  done. Found dependency on hl7.fhir.extensions.r5#4.0.1 in Sushi config. Pre-installing (00:02.711 / 00:02.756, 72Mb) Installing hl7.fhir.extensions.r5#4.0.1 to the package cache  Fetching: Error fetching https://packages2.fhir.org/packages/hl7.fhir.extensions.r5: Not Found Error fetching https://packages.fhir.org/hl7.fhir.extensions.r5: Not Found Unable to install hl7.fhir.extensions.r5#4.0.1: Unable to resolve package id hl7.fhir.extensions.r5#4.0.1 (00:01.253 / 00:04.009, 120Mb) Trying to go on (00:00.000 / 00:04.010, 120Mb) Found dependency on hl7.fhir.uv.xver-r5.r4#0.0.1-snapshot-2 in Sushi config. Pre-installing (00:00.000 / 00:04.010, 120Mb) Installing hl7.fhir.uv.xver-r5.r4#0.0.1-snapshot-2 to the package cache  Fetching:  Installing hl7.fhir.uv.xver-r5.r4#0.0.1-snapshot-2  done. Found dependency on hl7.fhir.eu.extensions.r4#1.2.0 in Sushi config. Pre-installing (00:25.500 / 00:29.511, 656Mb) Installing hl7.fhir.eu.extensions.r4#1.2.0 to the package cache  Fetching:  Installing hl7.fhir.eu.extensions.r4#1.2.0  done. Found dependency on ihe.pharm.mpd.r4#1.0.0-comment-2 in Sushi config. Pre-installing (00:00.383 / 00:29.894, 672Mb) Installing ihe.pharm.mpd.r4#1.0.0-comment-2 to the package cache  Fetching:  Installing ihe.pharm.mpd.r4#1.0.0-comment-2  done. Run Sushi on /scratch/repo (00:00.881 / 00:30.775, 680Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.744 / 00:31.520, 690Mb) Sushi: info Arguments: (00:00.000 / 00:31.521, 690Mb) Sushi: info --require-latest (00:00.000 / 00:31.521, 690Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:31.521, 690Mb) Sushi: info /scratch/repo (00:00.000 / 00:31.521, 690Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.751 / 00:32.273, 690Mb) Sushi: info Importing FSH text... (00:00.155 / 00:32.428, 690Mb) Sushi: info Preprocessed 48 documents with 221 aliases. (00:00.357 / 00:32.785, 690Mb) Sushi: info Imported 30 definitions and 19 instances. (00:00.211 / 00:32.996, 690Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.189 / 00:33.186, 690Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.9.0 (00:00.623 / 00:33.810, 690Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.9.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.9.0 (00:00.001 / 00:33.811, 690Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.9.0 (00:00.876 / 00:34.687, 690Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.9.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.9.0 (00:00.003 / 00:34.690, 690Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.9.0 with 117 resources (00:00.083 / 00:34.773, 694Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 7.0.1 (00:00.465 / 00:35.239, 694Mb) Sushi: info Attempting to download hl7.terminology.r4#7.0.1 from https://packages.fhir.org/hl7.terminology.r4/7.0.1 (00:00.000 / 00:35.240, 694Mb) Sushi: info Downloaded hl7.terminology.r4#7.0.1 (00:03.155 / 00:38.395, 694Mb) Sushi: info Cached hl7.terminology.r4#7.0.1 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#7.0.1 (00:00.001 / 00:38.397, 694Mb) Sushi: info Loaded hl7.terminology.r4#7.0.1 with 4096 resources (00:01.683 / 00:40.080, 694Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.467 / 00:40.547, 694Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:40.548, 694Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.535 / 00:42.084, 694Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:42.086, 694Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.331 / 00:42.417, 694Mb) Sushi: info Loaded hl7.fhir.uv.ips#2.0.0 with 74 resources (00:00.081 / 00:42.499, 694Mb) Sushi: info Loading supplemental version of FHIR to support extensions from hl7.fhir.extensions.r5 (00:00.000 / 00:42.499, 694Mb) Sushi: info Attempting to download hl7.fhir.r5.core#5.0.0 from https://packages.fhir.org/hl7.fhir.r5.core/5.0.0 (00:00.015 / 00:42.515, 694Mb) Sushi: info Downloaded hl7.fhir.r5.core#5.0.0 (00:04.470 / 00:46.986, 694Mb) Sushi: info Cached hl7.fhir.r5.core#5.0.0 to /home/fhiruser/.fhir/packages/hl7.fhir.r5.core#5.0.0 (00:00.001 / 00:46.987, 694Mb) Sushi: info Loaded hl7.fhir.r5.core#5.0.0 with 2968 resources (00:01.360 / 00:48.347, 694Mb) Sushi: info Loaded hl7.fhir.uv.xver-r5.r4#0.0.1-snapshot-2 with 4577 resources (00:02.086 / 00:50.434, 694Mb) Sushi: info Loaded hl7.fhir.eu.extensions.r4#1.2.0 with 10 resources (00:00.005 / 00:50.440, 694Mb) Sushi: info Loaded ihe.pharm.mpd.r4#1.0.0-comment-2 with 48 resources (00:00.017 / 00:50.457, 694Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:50.458, 694Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.854 / 00:54.313, 694Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:54.314, 694Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.577 / 00:55.891, 694Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.006 / 00:55.898, 694Mb) Sushi: info Converting FSH to FHIR resources... (00:00.028 / 00:55.927, 694Mb) Sushi: info Converted 23 FHIR StructureDefinitions. (00:06.603 / 01:02.530, 694Mb) Sushi: info Converted 7 FHIR ValueSets. (00:00.446 / 01:02.977, 694Mb) Sushi: info Converted 19 FHIR instances. (00:02.326 / 01:05.304, 694Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 01:05.305, 694Mb) Sushi: info Exported 49 FHIR resources as JSON. (00:00.127 / 01:05.433, 694Mb) Sushi: info Assembling Implementation Guide sources... (00:00.002 / 01:05.435, 694Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.eu.base.json (00:00.072 / 01:05.508, 694Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 01:05.508, 694Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 01:05.510, 694Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:05.510, 694Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 01:05.510, 694Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:05.510, 694Mb) Sushi: | | 23 | 0 | 0 | 0 | | (00:00.000 / 01:05.510, 694Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:05.510, 694Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:05.511, 694Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 01:05.511, 694Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:05.511, 694Mb) Sushi: | | 7 | 0 | 19 | | (00:00.000 / 01:05.511, 694Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:05.511, 694Mb) Sushi: | | (00:00.000 / 01:05.511, 694Mb) Sushi: =================================================================== (00:00.000 / 01:05.512, 694Mb) Sushi: | You are dolphinitely doing great! 0 Errors 0 Warnings | (00:00.000 / 01:05.512, 694Mb) Sushi: =================================================================== (00:00.000 / 01:05.512, 694Mb) Root directory: /scratch/repo (00:00.031 / 01:05.544, 694Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.735 / 01:06.279, 65Mb) Load Template from #ig-template (00:00.628 / 01:06.907, 66Mb) Load Template from hl7.fhir.template#1.0.0 (00:00.002 / 01:06.910, 66Mb) Installing hl7.fhir.template#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.template#1.0.0  done.  Load Template from hl7.base.template#1.0.0 (00:00.368 / 01:07.278, 74Mb) Installing hl7.base.template#1.0.0 to the package cache  Fetching:  Installing hl7.base.template#1.0.0  done.  Load Template from fhir.base.template#1.0.0 (00:00.313 / 01:07.592, 82Mb) Installing fhir.base.template#1.0.0 to the package cache  Fetching:  Installing fhir.base.template#1.0.0  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:05.249 / 01:12.841, 346Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 01:12.842, 346Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-8913365592402838729.html Connect to Terminology Server at http://tx.fhir.org (00:25.981 / 01:38.823, 546Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#7.0.1 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.terminology.r4#6.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.5.0  done. Load Package hl7.terminology.r4#6.5.0 Installing hl7.fhir.uv.ipa#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.ipa#1.1.0  done. Installing hl7.terminology.r4#6.2.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.2.0  done. Load Package hl7.terminology.r4#6.2.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Load Package hl7.fhir.uv.ipa#1.1.0 Load Package hl7.fhir.uv.ips#2.0.0 Load Package hl7.fhir.uv.xver-r5.r4#0.0.1-snapshot-2 Load Package hl7.fhir.eu.extensions.r4#1.2.0 Installing hl7.terminology.r4#6.3.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.3.0  done. Load Package hl7.terminology.r4#6.3.0 Load Package ihe.pharm.mpd.r4#1.0.0-comment-2 Load Package hl7.fhir.uv.tools.r4#0.9.0 Load R5 Specials Cannot find or generate snapshot for base definition http://hl7.org/fhir/StructureDefinition/CanonicalResource from http://hl7.org/fhir/StructureDefinition/TestCases Initialization complete (01:31.276 / 03:10.100, 1Gb) Load IG (00:00.000 / 03:10.100, 1Gb) Load Content (00:00.003 / 03:10.104, 1Gb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.167 / 03:10.271, 1Gb) Process Loaded Resources (00:01.627 / 03:11.898, 1Gb) Generating Snapshots (00:00.453 / 03:12.352, 1Gb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.eu/fhir/base/package-list.json for version check (00:02.486 / 03:14.838, 1Gb) Fetch http://hl7.org/fhir/uv/ips/package-list.json for version check (00:00.704 / 03:15.542, 1Gb) Checking Language (00:00.115 / 03:15.658, 1Gb) Load Dependency Info (00:00.002 / 03:15.660, 1Gb) Load Info (00:00.001 / 03:15.662, 1Gb) Load Paths (00:00.000 / 03:15.663, 1Gb) Check R4 / R4B (00:00.000 / 03:15.663, 1Gb) Assign Comparison Ids (00:00.036 / 03:15.700, 1Gb) Propagating status (00:00.000 / 03:15.700, 1Gb) Generating Narratives (00:00.000 / 03:15.700, 1Gb) Validating Conformance Resources (00:20.625 / 03:36.326, 1Gb) Failed to determine latest version of package hl7.fhir.uv.xver-r5.r4 from server: https://packages2.fhir.org/packages Failed to determine latest version of package hl7.fhir.uv.xver-r5.r4 from server: https://packages.fhir.org Failed to determine latest version of package hl7.fhir.uv.xver-r5.r4 from server: build.fhir.org Latest version of package hl7.fhir.uv.xver-r5.r4 found locally is 0.0.1-snapshot-2 - using that Check profiles & code systems (00:27.330 / 04:03.657, 1Gb) Check realm rules (00:00.025 / 04:03.682, 1Gb) Previous Version Comparison (00:00.000 / 04:03.683, 1Gb) Installing hl7.fhir.eu.base#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.eu.base#0.1.0  done. Installing hl7.fhir.eu.extensions.r4#0.1.1 to the package cache  Fetching:  Installing hl7.fhir.eu.extensions.r4#0.1.1  done. Checking for Bundles to sign (00:30.855 / 04:34.538, 2Gb) Validating Resources (00:00.000 / 04:34.538, 2Gb) Processing Provenance Records (00:06.290 / 04:40.829, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 04:40.829, 2Gb) Generate Native Outputs (00:00.265 / 04:41.095, 2Gb) Run Template (00:06.784 / 04:47.880, 3Gb) **WARNING** Jira file generation will not be correct because multiple artifacts have the same name (ignoring content in "()"): Organization **WARNING** Jira file generation will not be correct because multiple artifacts have the same name (ignoring content in "()"): Patient **WARNING** Jira file generation will not be correct because multiple artifacts have the same name (ignoring content in "()"): Practitioner **WARNING** Jira file generation will not be correct because multiple artifacts have the same name (ignoring content in "()"): PractitionerRole Generate HTML Outputs (00:02.906 / 04:50.787, 3Gb) Generate Spreadsheets (00:32.943 / 05:23.730, 3Gb) Generate Summaries (00:06.318 / 05:30.049, 5Gb) Generating Summary Outputs (00:00.000 / 05:30.049, 5Gb) DB Cumulative Time invested: 00:00:05.180 Sending Usage Stats to Server (00:13.700 / 05:43.750, 7Gb) ## Memory (MB): Use = 7691, Free = 11316, Total = 19008, Max = 19008 (00:00.011 / 05:43.761, 7Gb) Reclaiming memory... (00:00.000 / 05:43.761, 7Gb) ## Memory (MB): Use = 1693, Free = 17314, Total = 19008, Max = 19008 (00:01.877 / 05:45.639, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 05:45.640, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 05:45.640, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 05:45.640, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 05:45.640, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.522 / 05:46.163, 1Gb) Jekyll: Generating... (00:00.000 / 05:46.164, 1Gb) Jekyll: done in 2.933 seconds. (00:02.932 / 05:49.096, 1Gb) Checking Output HTML (00:03.862 / 05:52.959, 3Gb) Processed /scratch/repo/output - % reduction = 100 (67764020 ==> 495805) found 1368 files (00:02.640 / 05:55.600, 5Gb) ........................................ ........................................ ... 1368 html files, 0 pages invalid xhtml (0%) (00:36.430 / 06:32.030, 12Gb) ... 282972 links, 0 broken links (0%) (00:00.000 / 06:32.030, 12Gb) Generate fragment-usage-analysis.csv (00:00.000 / 06:32.031, 12Gb) Build final .zip (00:00.014 / 06:32.045, 12Gb) Final .zip built (00:03.651 / 06:35.696, 12Gb) Built. Times: loading: 00:05.554, generate: 03:24.661, narrative generation: 00:20.625, realm-rules: 00:00.000, previous-version: 00:30.799, jekyll: 00:03.482, validation: 00:33.615 (#50), template: 00:02.917 (#3) (00:04.624 / 06:40.320, 1Gb) Generating QA (00:00.000 / 06:40.320, 1Gb) Validation output in /scratch/repo/output/qa.html Errors: 2, Warnings: 2, Info: 0, Broken Links: 0 (00:00.501 / 06:40.821, 1Gb) Finished @ 12/22/25, 8:25 AM. Max Memory Used = 12Gb (00:00.060 / 06:40.882, 1Gb)