INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/hl7-be/patient-dossier --branch beproblem repo DEBUG:root:Time to deadline 35879.99762 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.530442 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.308903 seconds npm WARN deprecated glob@7.2.3: Old versions of glob are not supported, and contain widely publicized security vulnerabilities, which have been fixed in the current version. Please update. Support for old versions may be purchased (at exorbitant rates) by contacting i@izs.me npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 5s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.10.0 npm notice Changelog: npm notice Run `npm install -g npm@11.10.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-be/patient-dossier/ -out /scratch/repo DEBUG:root:Time to deadline 35872.71374 seconds FHIR IG Publisher Version 2.1.0 (Git# c044f39673af). Built 2026-02-03T21:34:10.972Z (14 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-be/patient-dossier/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Wednesday, February 18, 2026, 8:31:41 AM Coordinated Universal Time (2026-02-18T08:31:41Z) Build FHIR IG from /scratch/repo (00:00.022 / 00:00.022, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.025, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.027, 97Mb) Found dependency on hl7.fhir.be.core#current in Sushi config. Pre-installing (00:00.008 / 00:00.036, 97Mb) Installing hl7.fhir.be.core#current to the package cache  Fetching:  Installing hl7.fhir.be.core#current  done. Run Sushi on /scratch/repo (00:01.698 / 00:01.735, 72Mb) Sushi: info Running SUSHI v3.17.0 (implements FHIR Shorthand specification v3.0.0) (00:00.566 / 00:02.301, 80Mb) Sushi: info Arguments: (00:00.000 / 00:02.301, 80Mb) Sushi: info --require-latest (00:00.000 / 00:02.302, 80Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:02.302, 80Mb) Sushi: info /scratch/repo (00:00.000 / 00:02.302, 80Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.640 / 00:02.943, 80Mb) Sushi: info Importing FSH text... (00:00.121 / 00:03.064, 80Mb) Sushi: info Preprocessed 3 documents with 0 aliases. (00:00.088 / 00:03.153, 80Mb) Sushi: info Imported 3 definitions and 0 instances. (00:00.008 / 00:03.162, 80Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.087 / 00:03.249, 80Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 1.0.0 (00:00.635 / 00:03.885, 80Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#1.0.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/1.0.0 (00:00.000 / 00:03.886, 80Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#1.0.0 (00:00.864 / 00:04.750, 80Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#1.0.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#1.0.0 (00:00.002 / 00:04.753, 80Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#1.0.0 with 118 resources (00:00.064 / 00:04.817, 80Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 7.0.1 (00:00.482 / 00:05.300, 80Mb) Sushi: info Attempting to download hl7.terminology.r4#7.0.1 from https://packages.fhir.org/hl7.terminology.r4/7.0.1 (00:00.000 / 00:05.301, 80Mb) Sushi: info Downloaded hl7.terminology.r4#7.0.1 (00:02.819 / 00:08.120, 80Mb) Sushi: info Cached hl7.terminology.r4#7.0.1 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#7.0.1 (00:00.001 / 00:08.122, 80Mb) Sushi: info Loaded hl7.terminology.r4#7.0.1 with 4096 resources (00:01.208 / 00:09.330, 80Mb) Sushi: info Loaded hl7.fhir.be.core#current with 43 resources (00:00.102 / 00:09.433, 80Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:09.434, 80Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.145 / 00:12.579, 88Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:12.581, 88Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.184 / 00:13.765, 88Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.563 / 00:14.329, 88Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:14.329, 88Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.650 / 00:15.979, 88Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:15.981, 88Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.294 / 00:16.275, 88Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.007 / 00:16.283, 88Mb) Sushi: info Converting FSH to FHIR resources... (00:00.016 / 00:16.300, 88Mb) Sushi: error Cannot read properties of undefined (reading 'sdType') (00:00.250 / 00:16.550, 88Mb) Sushi: File: /scratch/repo/input/fsh/BeProcedure.fsh (00:00.000 / 00:16.550, 88Mb) Sushi: Line: 22 (00:00.000 / 00:16.551, 88Mb) Sushi: info Converted 3 FHIR StructureDefinitions. (00:00.145 / 00:16.696, 88Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:16.696, 88Mb) Sushi: info Exported 3 FHIR resources as JSON. (00:00.018 / 00:16.715, 88Mb) Sushi: info Assembling Implementation Guide sources... (00:00.001 / 00:16.717, 88Mb) Sushi: warn (00:00.036 / 00:16.753, 88Mb) Sushi: !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! IMPORTANT !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! (00:00.000 / 00:16.754, 88Mb) Sushi: Your ig.ini file does NOT point to the Implementation Guide resource that SUSHI generates. As a (00:00.000 / 00:16.754, 88Mb) Sushi: result, the IG Publisher will IGNORE the SUSHI-generated ImplementationGuide resource. To fix this, (00:00.000 / 00:16.754, 88Mb) Sushi: please do one of the following: (00:00.000 / 00:16.754, 88Mb) Sushi: - Update your ig.ini file with 'ig = fsh-generated/resources/ImplementationGuide-hl7.fhir.be.patient-dossier.json' (recommended), or (00:00.000 / 00:16.754, 88Mb) Sushi: - Update your sushi-config.yaml file with 'FSHOnly: true' to tell SUSHI NOT to generate the IG resource (00:00.000 / 00:16.754, 88Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.be.patient-dossier.json (00:00.000 / 00:16.754, 88Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:16.755, 88Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:16.756, 88Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.756, 88Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:16.756, 88Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:16.756, 88Mb) Sushi: | | 1 | 0 | 2 | 0 | | (00:00.000 / 00:16.757, 88Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.757, 88Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.757, 88Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:16.757, 88Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:16.757, 88Mb) Sushi: | | 0 | 0 | 0 | | (00:00.000 / 00:16.757, 88Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:16.758, 88Mb) Sushi: | | (00:00.000 / 00:16.758, 88Mb) Sushi: =================================================================== (00:00.000 / 00:16.758, 88Mb) Sushi: | Ick! Errors! 1 Error 1 Warning | (00:00.000 / 00:16.758, 88Mb) Sushi: =================================================================== (00:00.000 / 00:16.758, 88Mb) Sushi couldn't be run. Complete output from running Sushi : (00:00.019 / 00:16.778, 88Mb) Note: Check that Sushi is installed correctly ("npm install -g fsh-sushi". On windows, get npm from https://www.npmjs.com/get-npm) (00:00.000 / 00:16.778, 88Mb) Exception: Process exited with an error: 1 (Exit value: 1) (00:00.000 / 00:16.778, 88Mb) Publishing Content Failed: Process exited with an error: 1 (Exit value: 1) (00:00.000 / 00:16.779, 88Mb) (00:00.000 / 00:16.779, 88Mb) Use -? to get command line help (00:00.000 / 00:16.779, 88Mb) (00:00.000 / 00:16.779, 88Mb) Stack Dump (for debugging): (00:00.000 / 00:16.779, 88Mb) org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.FSHRunner.runFsh(FSHRunner.java:89) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.initialize(PublisherIGLoader.java:143) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:223) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1598)