INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/hl7-be/core --branch master repo DEBUG:root:Time to deadline 35879.997755 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.580281 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.309749 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. added 139 packages in 6s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-be/core/ -out /scratch/repo DEBUG:root:Time to deadline 35872.01397 seconds FHIR IG Publisher Version 2.0.26 (Git# 0a43ac207d1f). Built 2025-11-06T09:21:35.314Z (33 mins old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/hl7-be/core/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Thursday, November 6, 2025, 9:54:55 AM Coordinated Universal Time (2025-11-06T09:54:55Z) Build FHIR IG from /scratch/repo (00:00.027 / 00:00.027, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.029, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.033, 97Mb) Run Sushi on /scratch/repo (00:00.006 / 00:00.039, 97Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.596 / 00:00.636, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.637, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.637, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.637, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.638, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.588 / 00:01.226, 113Mb) Sushi: warn Configuration property dependencies has a value with an unexpected type. (00:00.153 / 00:01.379, 113Mb) Sushi: info Importing FSH text... (00:00.000 / 00:01.380, 113Mb) Sushi: info Preprocessed 59 documents with 35 aliases. (00:00.605 / 00:01.985, 113Mb) Sushi: info Imported 31 definitions and 24 instances. (00:00.077 / 00:02.063, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.094 / 00:02.157, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.581 / 00:02.738, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:02.739, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.852 / 00:03.592, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.003 / 00:03.595, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.065 / 00:03.661, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.469 / 00:04.130, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:04.131, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:03.277 / 00:07.408, 113Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:07.410, 113Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.276 / 00:08.686, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.460 / 00:09.147, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:09.147, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.680 / 00:10.828, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:10.830, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.302 / 00:11.132, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:11.132, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.884 / 00:15.017, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.002 / 00:15.020, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.137 / 00:16.157, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/examples. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.010 / 00:16.168, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/extensions. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:16.168, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/models. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:16.168, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/profiles. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:16.169, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/resources. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:16.169, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/vocabulary. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.000 / 00:16.169, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.000 / 00:16.169, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.018 / 00:16.188, 113Mb) Sushi: info Converted 22 FHIR StructureDefinitions. (00:02.129 / 00:18.317, 113Mb) Sushi: info Converted 5 FHIR CodeSystems. (00:08.942 / 00:27.259, 113Mb) Sushi: info Converted 4 FHIR ValueSets. (00:00.265 / 00:27.525, 113Mb) Sushi: info Converted 24 FHIR instances. (00:02.363 / 00:29.888, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 00:29.889, 113Mb) Sushi: info Exported 54 FHIR resources as JSON. (00:00.071 / 00:29.961, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.002 / 00:29.963, 113Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.be.core.json (00:00.009 / 00:29.972, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:29.972, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:29.974, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:29.974, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:29.974, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:29.974, 113Mb) Sushi: | | 12 | 6 | 4 | 0 | | (00:00.000 / 00:29.975, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:29.975, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:29.975, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:29.975, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:29.975, 113Mb) Sushi: | | 4 | 5 | 24 | | (00:00.000 / 00:29.975, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:29.976, 113Mb) Sushi: | | (00:00.000 / 00:29.976, 113Mb) Sushi: =================================================================== (00:00.000 / 00:29.976, 113Mb) Sushi: | A bit pitchy, but tuna-ble. 0 Errors 1 Warning | (00:00.000 / 00:29.976, 113Mb) Sushi: =================================================================== (00:00.000 / 00:29.976, 113Mb) Root directory: /scratch/repo (00:00.044 / 00:30.021, 113Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.537 / 00:30.558, 37Mb) Load Template from hl7.be.fhir.template#current (00:00.519 / 00:31.078, 94Mb) Installing hl7.be.fhir.template#current to the package cache  Fetching:  Installing hl7.be.fhir.template#current  done.  Load Template from fhir2.base.template#current (00:01.583 / 00:32.661, 158Mb) Installing fhir2.base.template#current to the package cache  Fetching:  Installing fhir2.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:03.743 / 00:36.405, 217Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:36.405, 217Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-1947479029550281202.html Connect to Terminology Server at http://tx.fhir.org (00:40.275 / 01:16.680, 277Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:07.834 / 01:24.515, 819Mb) Load IG (00:00.000 / 01:24.515, 819Mb) Load Translations (00:00.002 / 01:24.518, 822Mb) Load Content (00:00.000 / 01:24.518, 822Mb) Using en as the default narrative language. (Implementation Guide param i18n-default-lang) (00:00.074 / 01:24.593, 827Mb) Process Loaded Resources (00:00.805 / 01:25.398, 907Mb) Generating Snapshots (00:00.282 / 01:25.681, 979Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch https://www.ehealth.fgov.be/standards/fhir/core/package-list.json for version check (00:00.948 / 01:26.629, 449Mb) Fetch http://hl7.org/fhir/uv/ipa/package-list.json for version check (00:00.715 / 01:27.345, 453Mb) Checking Language (00:00.118 / 01:27.463, 453Mb) Load Dependency Info (00:00.001 / 01:27.465, 453Mb) Load Info (00:00.001 / 01:27.466, 453Mb) Load Paths (00:00.000 / 01:27.467, 457Mb) Check R4 / R4B (00:00.000 / 01:27.467, 457Mb) Assign Comparison Ids (00:00.053 / 01:27.520, 473Mb) Propagating status (00:00.000 / 01:27.521, 473Mb) Generating Narratives (00:00.000 / 01:27.521, 473Mb) Validating Conformance Resources (00:01.923 / 01:29.445, 364Mb) Check profiles & code systems (00:09.127 / 01:38.572, 670Mb) Check realm rules (00:00.003 / 01:38.576, 670Mb) Previous Version Comparison (00:00.000 / 01:38.576, 670Mb) Installing hl7.fhir.uv.ipa#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.ipa#1.1.0  done. Installing hl7.terminology.r4#6.2.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.2.0  done. Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Checking for Bundles to sign (00:09.440 / 01:48.017, 845Mb) Validating Resources (00:00.000 / 01:48.017, 845Mb) Processing Provenance Records (00:01.346 / 01:49.363, 1Gb) Generating Translation artifacts (00:00.000 / 01:49.364, 1Gb) Generating Outputs in /scratch/repo/output (00:00.002 / 01:49.366, 1Gb) Generate Native Outputs (00:00.358 / 01:49.725, 1Gb) Run Template (00:14.182 / 02:03.907, 1Gb) en Generate HTML Outputs (00:01.736 / 02:05.644, 1Gb) Generate Spreadsheets (00:17.810 / 02:23.454, 3Gb) Generate Summaries (00:03.718 / 02:27.172, 4Gb) Generating Summary Outputs (en) (00:00.000 / 02:27.173, 4Gb) DB Cumulative Time invested: 00:00:15.948 Sending Usage Stats to Server (00:08.129 / 02:35.303, 1Gb) ## Memory (MB): Use = 1795, Free = 17212, Total = 19008, Max = 19008 (00:00.005 / 02:35.309, 1Gb) Reclaiming memory... (00:00.000 / 02:35.309, 1Gb) ## Memory (MB): Use = 784, Free = 18223, Total = 19008, Max = 19008 (00:00.627 / 02:35.937, 792Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 02:35.938, 792Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 02:35.938, 792Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 02:35.938, 792Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 02:35.938, 792Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.442 / 02:36.381, 816Mb) Jekyll: Generating... (00:00.000 / 02:36.381, 816Mb) Jekyll: done in 2.905 seconds. (00:02.904 / 02:39.286, 824Mb) Checking Output HTML (00:02.232 / 02:41.518, 1Gb) AI format for /scratch/repo/output/en - % reduction = 99 found 2415 files (00:01.160 / 02:42.679, 2Gb) ........................................ ........................................ ... 2415 html files, 0 pages invalid xhtml (0%) (00:16.442 / 02:59.122, 4Gb) ... 170096 links, 6 broken links (0%) (00:00.000 / 02:59.122, 4Gb) Generate fragment-usage-analysis.csv (00:00.000 / 02:59.122, 4Gb) Build final .zip (00:00.007 / 02:59.129, 4Gb) Final .zip built (00:02.669 / 03:01.799, 4Gb) Built. Times: loading: 00:02.945, generate: 01:36.533, narrative generation: 00:01.923, realm-rules: 00:00.000, previous-version: 00:09.413, jekyll: 00:03.369, validation: 00:10.428 (#55), template: 00:01.744 (#3) (00:02.198 / 03:03.997, 4Gb) Generating QA (00:00.000 / 03:03.998, 4Gb) Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 76, Info: 6, Broken Links: 6 (00:00.314 / 03:04.312, 4Gb) Finished @ 11/6/25, 9:57 AM. Max Memory Used = 4Gb (00:00.024 / 03:04.336, 4Gb)