INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/costateixeira/sample-ig --branch master repo DEBUG:root:Time to deadline 35879.998124 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.97644 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.605138 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/costateixeira/sample-ig/ -out /scratch/repo DEBUG:root:Time to deadline 35870.353488 seconds FHIR IG Publisher Version 2.0.21 (Git# e2ed3297ec93). Built 2025-10-14T00:25:09.351Z (7 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/costateixeira/sample-ig/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, October 21, 2025, 9:15:04 PM Coordinated Universal Time (2025-10-21T21:15:04Z) Build FHIR IG from /scratch/repo (00:00.027 / 00:00.027, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.030, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.032, 97Mb) Root directory: /scratch/repo (00:00.006 / 00:00.039, 97Mb) Load Template from #local-template (00:01.068 / 00:01.107, 69Mb) Load Template from fhir.base.template#current (00:00.219 / 00:01.327, 86Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:04.343 / 00:05.671, 140Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.005 / 00:05.676, 140Mb) Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Running Terminology Log: /tmp/ohfu-fhir-ig-17732649673387471486.html Connect to Terminology Server at http://tx.fhir.org (00:45.877 / 00:51.554, 498Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r4#6.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.5.0  done. Load Package hl7.terminology.r4#6.5.0 Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing fhir.cqf.common#4.0.1 to the package cache  Fetching:  Installing fhir.cqf.common#4.0.1  done. Installing hl7.fhir.uv.cpg#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.cpg#1.0.0  done. Load Package hl7.fhir.uv.cpg#1.0.0 Load Package fhir.cqf.common#4.0.1 Installing hl7.fhir.uv.tools.r4#0.8.0 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.8.0  done. Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:18.435 / 01:09.989, 446Mb) Load IG (00:00.000 / 01:09.989, 446Mb) Load Content (00:00.001 / 01:09.990, 446Mb) Using en as the default narrative language. (Implementation Guide param i18n-default-lang) (00:00.069 / 01:10.060, 454Mb) Translating CQL source (00:00.031 / 01:10.091, 454Mb) Translating CQL source in folder /scratch/repo/input/cql (00:00.000 / 01:10.091, 454Mb) Translating CQL source in file /scratch/repo/input/cql/notincluded.cql (00:00.040 / 01:10.131, 454Mb) CQL translation completed successfully. (00:01.066 / 01:11.198, 558Mb) Translating CQL source in file /scratch/repo/input/cql/example.cql (00:00.000 / 01:11.198, 558Mb) CQL translation completed successfully. (00:01.128 / 01:12.326, 678Mb) org.hl7.fhir.r5.fhirpath.FHIRLexer$FHIRLexerException: Error @1, 2: Found "�" expecting "group" at org.hl7.fhir.r5.fhirpath.FHIRLexer.error(FHIRLexer.java:140) at org.hl7.fhir.r5.fhirpath.FHIRLexer.error(FHIRLexer.java:136) at org.hl7.fhir.r5.fhirpath.FHIRLexer.token(FHIRLexer.java:408) at org.hl7.fhir.r5.elementmodel.FmlParser.parseGroup(FmlParser.java:271) at org.hl7.fhir.r5.elementmodel.FmlParser.parse(FmlParser.java:118) at org.hl7.fhir.r5.elementmodel.FmlParser.parse(FmlParser.java:59) at org.hl7.fhir.igtools.publisher.SimpleFetcher.scan(SimpleFetcher.java:413) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.loadResources(PublisherIGLoader.java:2926) at org.hl7.fhir.igtools.publisher.PublisherIGLoader.load(PublisherIGLoader.java:2030) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:355) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:218) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1487) Ignoring file /scratch/repo/input/translations-de/Questionnaire-example.po - the resource Questionnaire/example is not known Ignoring file /scratch/repo/input/translations-de/StructureDefinition-myObservation.po - the resource StructureDefinition/myObservation is not known Ignoring file /scratch/repo/input/translations-de/StructureDefinition-ext-myExtension.po - the resource StructureDefinition/ext-myExtension is not known Ignoring file /scratch/repo/input/translations-de/Patient-example.po - resource type 'Patient' is not supported for translation supplements Ignoring file /scratch/repo/input/translations-fr/Patient-example.po - resource type 'Patient' is not supported for translation supplements Process Loaded Resources (00:01.223 / 01:13.549, 586Mb) Generating Snapshots (00:00.200 / 01:13.749, 626Mb) Process Additional Loaded Resources (00:00.429 / 01:14.179, 730Mb) Generating Snapshots (00:00.000 / 01:14.179, 730Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://somewhere.org/fhir/uv/myig/package-list.json for version check (00:00.062 / 01:14.241, 730Mb) Processing Conformance Resources (00:00.084 / 01:14.325, 730Mb) Checking Language (00:00.000 / 01:14.325, 730Mb) Load Dependency Info (00:00.000 / 01:14.326, 730Mb) Load Info (00:00.000 / 01:14.327, 730Mb) Load Paths (00:00.000 / 01:14.327, 735Mb) Check R4 / R4B (00:00.000 / 01:14.328, 735Mb) Assign Comparison Ids (00:00.019 / 01:14.347, 735Mb) Propagating status (00:00.000 / 01:14.347, 735Mb) Generating Narratives (00:00.016 / 01:14.364, 738Mb) Validating Conformance Resources (00:03.525 / 01:17.889, 978Mb) Check profiles & code systems (00:09.542 / 01:27.432, 589Mb) Check realm rules (00:00.001 / 01:27.434, 589Mb) Previous Version Comparison (00:00.000 / 01:27.434, 589Mb) Checking for Bundles to sign (00:00.016 / 01:27.451, 589Mb) Validating Resources (00:00.000 / 01:27.451, 589Mb) Processing Provenance Records (00:00.829 / 01:28.281, 989Mb) Generating Translation artifacts (00:00.003 / 01:28.284, 989Mb) Generating Outputs in /scratch/repo/output (00:00.120 / 01:28.404, 1013Mb) Generate Native Outputs (00:00.198 / 01:28.603, 1021Mb) Run Template (00:02.778 / 01:31.381, 760Mb) Generate HTML Outputs (00:01.201 / 01:32.583, 617Mb) Generate Spreadsheets (00:06.387 / 01:38.970, 1Gb) Generate Summaries (00:02.005 / 01:40.976, 2Gb) Generating Summary Outputs (00:00.000 / 01:40.977, 2Gb) DB Cumulative Time invested: 00:00:00.391 Sending Usage Stats to Server (00:05.283 / 01:46.261, 3Gb) ## Memory (MB): Use = 3409, Free = 15598, Total = 19008, Max = 19008 (00:00.009 / 01:46.270, 3Gb) Reclaiming memory... (00:00.000 / 01:46.270, 3Gb) ## Memory (MB): Use = 562, Free = 18445, Total = 19008, Max = 19008 (00:00.566 / 01:46.837, 574Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.005 / 01:46.843, 574Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.008 / 01:46.851, 574Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 01:46.851, 574Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 01:46.851, 574Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.436 / 01:47.288, 594Mb) Jekyll: Generating... (00:00.000 / 01:47.288, 594Mb) Jekyll: done in 0.672 seconds. (00:00.671 / 01:47.959, 594Mb) Checking Output HTML (00:01.310 / 01:49.270, 1Gb) Processed /scratch/repo/output - % reduction = 99 (18686600 ==> 296612) found 823 files (00:00.526 / 01:49.797, 1Gb) ......................................... ......................................... ... 823 html files, 0 pages invalid xhtml (0%) (00:06.774 / 01:56.572, 4Gb) ... 47470 links, 0 broken links (0%) (00:00.000 / 01:56.572, 4Gb) Generate fragment-usage-analysis.csv (00:00.000 / 01:56.572, 4Gb) Build final .zip (00:00.007 / 01:56.579, 4Gb) Final .zip built (00:01.129 / 01:57.709, 4Gb) Built. Times: loading: 00:04.335, generate: 00:45.054, propagating status: 00:00.016, narrative generation: 00:03.525, realm-rules: 00:00.000, previous-version: 00:00.000, jekyll: 00:01.130, validation: 00:10.356 (#20), template: 00:01.212 (#3) (00:01.671 / 01:59.380, 4Gb) Generating QA (00:00.000 / 01:59.380, 4Gb) Internal error in location for message: 'Error @1, 2: Found / expecting a token name', loc = '/scratch/repo/input/cql/notincluded.cql', err = 'CQL source was not associated with a library resource in the IG.' Validation output in /scratch/repo/output/qa.html Errors: 31, Warnings: 29, Info: 9, Broken Links: 0 (00:00.243 / 01:59.623, 4Gb) Finished @ 10/21/25, 9:17 PM. Max Memory Used = 4Gb (00:00.021 / 01:59.644, 4Gb)