INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/IHTSDO/snomed-ig --branch master repo DEBUG:root:Time to deadline 35879.998284 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.32992 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.060863 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 5s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.7.0 npm notice Changelog: npm notice Run `npm install -g npm@11.7.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/IHTSDO/snomed-ig/ -out /scratch/repo DEBUG:root:Time to deadline 35872.772682 seconds FHIR IG Publisher Version 2.0.29 (Git# 826a7eb003d6). Built 2025-12-17T01:19:30.102Z (19 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/IHTSDO/snomed-ig/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Monday, January 5, 2026, 10:03:59 AM Coordinated Universal Time (2026-01-05T10:03:59Z) Build FHIR IG from /scratch/repo (00:00.020 / 00:00.020, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.022, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.025, 97Mb) Run Sushi on /scratch/repo (00:00.008 / 00:00.033, 97Mb) Sushi: info Running SUSHI v3.17.0 (implements FHIR Shorthand specification v3.0.0) (00:00.537 / 00:00.571, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.572, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.572, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.572, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.573, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.613 / 00:01.186, 113Mb) Sushi: warn Configuration property jurisdiction contains unexpected properties: system, code. Check that these properties are spelled, capitalized, and indented correctly. (00:00.113 / 00:01.300, 113Mb) Sushi: info Importing FSH text... (00:00.000 / 00:01.300, 113Mb) Sushi: info Preprocessed 32 documents with 13 aliases. (00:00.238 / 00:01.539, 113Mb) Sushi: warn No usage was specified on DrugValueSetExample0. The default #example usage will be applied, but ValueSet Instances are typically definitions. Specify a usage to remove this warning. (00:00.019 / 00:01.558, 113Mb) Sushi: File: /scratch/repo/input/fsh/fsh-source/DesignationUseContextExamples.fsh (00:00.000 / 00:01.559, 113Mb) Sushi: Line: 3 - 35 (00:00.000 / 00:01.559, 113Mb) Sushi: warn No usage was specified on DrugValueSetExample1. The default #example usage will be applied, but ValueSet Instances are typically definitions. Specify a usage to remove this warning. (00:00.000 / 00:01.559, 113Mb) Sushi: File: /scratch/repo/input/fsh/fsh-source/DesignationUseContextExamples.fsh (00:00.000 / 00:01.559, 113Mb) Sushi: Line: 38 - 92 (00:00.000 / 00:01.560, 113Mb) Sushi: warn No usage was specified on DrugValueSetExample2. The default #example usage will be applied, but ValueSet Instances are typically definitions. Specify a usage to remove this warning. (00:00.000 / 00:01.560, 113Mb) Sushi: File: /scratch/repo/input/fsh/fsh-source/DesignationUseContextExamples.fsh (00:00.000 / 00:01.561, 113Mb) Sushi: Line: 96 - 139 (00:00.000 / 00:01.561, 113Mb) Sushi: warn No usage was specified on SimpleCodeSystem. The default #example usage will be applied, but CodeSystem Instances are typically definitions. Specify a usage to remove this warning. (00:00.001 / 00:01.562, 113Mb) Sushi: File: /scratch/repo/input/fsh/fsh-source/DesignationUseContextExtension.fsh (00:00.000 / 00:01.562, 113Mb) Sushi: Line: 27 - 49 (00:00.000 / 00:01.563, 113Mb) Sushi: info Imported 30 definitions and 38 instances. (00:00.002 / 00:01.565, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.107 / 00:01.676, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.9.0 (00:00.628 / 00:02.302, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.9.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.9.0 (00:00.001 / 00:02.303, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.9.0 (00:00.821 / 00:03.125, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.9.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.9.0 (00:00.003 / 00:03.129, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.9.0 with 117 resources (00:00.060 / 00:03.190, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 7.0.1 (00:00.480 / 00:03.670, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#7.0.1 from https://packages.fhir.org/hl7.terminology.r4/7.0.1 (00:00.000 / 00:03.671, 113Mb) Sushi: info Downloaded hl7.terminology.r4#7.0.1 (00:02.532 / 00:06.203, 113Mb) Sushi: info Cached hl7.terminology.r4#7.0.1 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#7.0.1 (00:00.003 / 00:06.207, 113Mb) Sushi: info Loaded hl7.terminology.r4#7.0.1 with 4096 resources (00:01.133 / 00:07.341, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:07.341, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.076 / 00:10.417, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:10.419, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.065 / 00:11.484, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.452 / 00:11.937, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:11.937, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.487 / 00:13.425, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:13.426, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.293 / 00:13.720, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.010 / 00:13.731, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.017 / 00:13.748, 113Mb) Sushi: info Converted 14 FHIR StructureDefinitions. (00:00.565 / 00:14.314, 113Mb) Sushi: info Converted 16 FHIR ValueSets. (00:00.115 / 00:14.430, 113Mb) Sushi: info Converted 38 FHIR instances. (00:02.535 / 00:16.966, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:16.966, 113Mb) Sushi: info Exported 68 FHIR resources as JSON. (00:00.084 / 00:17.051, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.002 / 00:17.054, 113Mb) Sushi: info Generated ImplementationGuide-snomed-ig.json (00:00.015 / 00:17.069, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:17.069, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:17.071, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:17.071, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:17.071, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:17.071, 113Mb) Sushi: | | 12 | 2 | 0 | 0 | | (00:00.000 / 00:17.072, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:17.072, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:17.072, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:17.072, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:17.072, 113Mb) Sushi: | | 16 | 0 | 38 | | (00:00.000 / 00:17.072, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:17.073, 113Mb) Sushi: | | (00:00.000 / 00:17.073, 113Mb) Sushi: =================================================================== (00:00.000 / 00:17.073, 113Mb) Sushi: | You seem to be casting about. 0 Errors 5 Warnings | (00:00.000 / 00:17.073, 113Mb) Sushi: =================================================================== (00:00.000 / 00:17.073, 113Mb) Root directory: /scratch/repo (00:00.023 / 00:17.097, 113Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.492 / 00:17.589, 37Mb) Load Template from snomed-template (00:00.436 / 00:18.025, 94Mb) Load Template from fhir.base.template#current (00:00.216 / 00:18.241, 101Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:04.983 / 00:23.225, 384Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:23.225, 384Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-208775895997833503.html Connect to Terminology Server at http://tx.fhir.org (00:22.346 / 00:45.573, 581Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#7.0.1 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.fhir.uv.tools.r4#0.9.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Cannot find or generate snapshot for base definition http://hl7.org/fhir/StructureDefinition/CanonicalResource from http://hl7.org/fhir/StructureDefinition/TestCases Initialization complete (00:18.332 / 01:03.905, 370Mb) Load IG (00:00.000 / 01:03.906, 370Mb) Load Content (00:00.003 / 01:03.909, 370Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.075 / 01:03.984, 385Mb) Process Loaded Resources (00:00.800 / 01:04.785, 441Mb) Generating Snapshots (00:00.144 / 01:04.930, 473Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://snomed.info/fhir/package-list.json for version check (00:01.310 / 01:06.240, 402Mb) Checking Language (00:00.151 / 01:06.392, 410Mb) Load Dependency Info (00:00.002 / 01:06.395, 410Mb) Load Info (00:00.001 / 01:06.396, 410Mb) Load Paths (00:00.000 / 01:06.396, 410Mb) Check R4 / R4B (00:00.001 / 01:06.397, 414Mb) Assign Comparison Ids (00:00.037 / 01:06.435, 414Mb) Propagating status (00:00.000 / 01:06.435, 414Mb) Generating Narratives (00:00.000 / 01:06.435, 414Mb) Validating Conformance Resources (00:02.941 / 01:09.377, 1Gb) Check profiles & code systems (00:10.604 / 01:19.981, 921Mb) Check realm rules (00:00.002 / 01:19.983, 921Mb) Previous Version Comparison (00:00.000 / 01:19.983, 921Mb) Checking for Bundles to sign (00:00.026 / 01:20.010, 929Mb) Validating Resources (00:00.000 / 01:20.010, 929Mb) Processing Provenance Records (00:04.298 / 01:24.308, 1Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 01:24.309, 1Gb) Generate Native Outputs (00:00.280 / 01:24.590, 1Gb) Run Template (00:03.441 / 01:28.031, 1Gb) Generate HTML Outputs (00:01.066 / 01:29.098, 1Gb) Generate Spreadsheets (00:28.852 / 01:57.950, 1Gb) Generate Summaries (00:03.793 / 02:01.744, 2Gb) Generating Summary Outputs (00:00.000 / 02:01.744, 2Gb) DB Cumulative Time invested: 00:00:14.530 Sending Usage Stats to Server (00:04.473 / 02:06.218, 3Gb) ## Memory (MB): Use = 596, Free = 18411, Total = 19008, Max = 19008 (00:00.093 / 02:06.312, 604Mb) Reclaiming memory... (00:00.000 / 02:06.312, 604Mb) ## Memory (MB): Use = 542, Free = 18465, Total = 19008, Max = 19008 (00:00.588 / 02:06.900, 558Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 02:06.902, 558Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 02:06.902, 558Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 02:06.902, 558Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 02:06.902, 558Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.434 / 02:07.336, 574Mb) Jekyll: Generating... (00:00.000 / 02:07.336, 574Mb) Jekyll: done in 2.23 seconds. (00:02.229 / 02:09.566, 574Mb) Checking Output HTML (00:02.994 / 02:12.561, 2Gb) Processed /scratch/repo/output - % reduction = 100 (64296446 ==> 343361) found 1383 files (00:02.214 / 02:14.776, 3Gb) ........................................ ........................................ ... 1383 html files, 0 pages invalid xhtml (0%) (00:22.018 / 02:36.794, 5Gb) ... 244275 links, 0 broken links (0%) (00:00.000 / 02:36.794, 5Gb) Generate fragment-usage-analysis.csv (00:00.000 / 02:36.794, 5Gb) Build final .zip (00:00.006 / 02:36.801, 5Gb) Final .zip built (00:01.920 / 02:38.722, 5Gb) Built. Times: loading: 00:02.483, generate: 01:33.624, narrative generation: 00:02.941, realm-rules: 00:00.000, previous-version: 00:00.000, jekyll: 00:02.689, validation: 00:14.865 (#69), template: 00:01.077 (#3) (00:01.294 / 02:40.017, 5Gb) Generating QA (00:00.000 / 02:40.017, 5Gb) Validation output in /scratch/repo/output/qa.html Errors: 25, Warnings: 87, Info: 3, Broken Links: 0 (00:00.337 / 02:40.354, 5Gb) Finished @ 1/5/26, 10:06 AM. Max Memory Used = 5Gb (00:00.027 / 02:40.382, 5Gb)