INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/IHE/pharm-mm --branch master repo DEBUG:root:Time to deadline 35879.998452 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35878.230265 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35876.011434 seconds /usr/local/bin/sushi -> /usr/local/lib/node_modules/fsh-sushi/dist/app.js > es5-ext@0.10.61 postinstall /usr/local/lib/node_modules/fsh-sushi/node_modules/es5-ext > node -e "try{require('./_postinstall')}catch(e){}" || exit 0 npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@2.3.2 (node_modules/fsh-sushi/node_modules/fsevents): npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for fsevents@2.3.2: wanted {"os":"darwin","arch":"any"} (current: {"os":"linux","arch":"x64"}) + fsh-sushi@2.8.0 added 952 packages from 491 contributors in 10.093s DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -auto-ig-build -tx http://tx.fhir.org/r4 -target https://build.fhir.org/ig/IHE/pharm-mm/ -out /scratch/ig-build-temp-QH9VRC/repo DEBUG:root:Time to deadline 35865.567644 seconds FHIR IG Publisher Version 1.2.32 (Git# 05b6085b325b). Built 2023-02-03T20:57:58.826Z (19 hours old) Detected Java version: 11.0.9 from /usr/local/openjdk-11 on Linux/amd64 (64bit). 18366MB available dir = /scratch/ig-build-temp-QH9VRC/repo, path = /usr/local/rvm/bin:/usr/local/rvm/rubies/ruby-2.5.1/bin:/usr/local/openjdk-11/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -auto-ig-build -tx http://tx.fhir.org/r4 -target https://build.fhir.org/ig/IHE/pharm-mm/ -out /scratch/ig-build-temp-QH9VRC/repo Start Clock @ Saturday, February 4, 2023 at 4:49:04 PM Coordinated Universal Time (2023-02-04T16:49:04Z) Build FHIR IG from /scratch/ig-build-temp-QH9VRC/repo (00:00.004) API keys loaded from /etc/ig.builder.keyfile.ini (00:00.006) Package Cache: var/lib/.fhir/packages (00:00.009) Run Sushi on /scratch/ig-build-temp-QH9VRC/repo (00:00.011) Sushi: info Running SUSHI v2.8.0 (implements FHIR Shorthand specification v2.0.0) (00:00.366) Sushi: info Arguments: (00:00.366) Sushi: info --out /scratch/ig-build-temp-QH9VRC/repo (00:00.366) Sushi: info /scratch/ig-build-temp-QH9VRC/repo (00:00.366) Sushi: info Using configuration file: /scratch/ig-build-temp-QH9VRC/repo/sushi-config.yaml (00:01.707) Sushi: info Importing FSH text... (00:01.718) Sushi: info Preprocessed 3 documents with 0 aliases. (00:01.802) Sushi: info Imported 8 definitions and 0 instances. (00:01.812) Sushi: info Checking local cache for hl7.fhir.uv.tools#current... (00:01.813) Sushi: info Did not find hl7.fhir.uv.tools#current in local cache. (00:01.813) Sushi: info Checking local cache for hl7.fhir.r4.core#4.0.1... (00:01.825) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in local cache. (00:01.826) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... (00:01.826) Sushi: info Downloading hl7.fhir.uv.tools#current... (00:01.887) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:01.895) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:01.932) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:04.354) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:05.552) Sushi: info Found 8 files in input/* resource folders that were neither XML nor JSON. These files were not processed as resources by SUSHI. (00:05.600) Sushi: info Converting FSH to FHIR resources... (00:05.608) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:06.683) Load Template from ihe.fhir.template#current (00:07.257) Installing ihe.fhir.template#current to the package cache Fetching: Installing: done. Load Template from fhir.base.template#current (00:07.617) Installing fhir.base.template#current to the package cache Fetching: .. Installing: .. done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/ig-build-temp-QH9VRC/repo/template/onLoad-ig-working.xml to /scratch/ig-build-temp-QH9VRC/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-QH9VRC/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/ig-build-temp-QH9VRC/repo (00:09.800) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching: .................................................................................................... Installing: .................................................................................................... done. .:Terminology Cache is at /scratch/ig-build-temp-QH9VRC/repo/input-cache/txcache. Trimming now (00:20.386) Connect to Terminology Server at http://tx.fhir.org/r4 (00:20.387) Installing hl7.fhir.pubpack#0.1.4 to the package cache Fetching: .......... Installing: .......... done. Load Package hl7.fhir.pubpack#0.1.4 Installing hl7.fhir.xver-extensions#0.0.12 to the package cache Fetching: Installing: done. Load Package hl7.fhir.xver-extensions#0.0.12 Installing hl7.terminology.r4#5.0.0 to the package cache Fetching: .................................................................................... Installing: .................................................................................... done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.tools#current to the package cache Fetching: . Installing: . done. Load Package hl7.fhir.uv.tools#current Load R5 ExtensionsInstalling hl7.fhir.r5.core#current to the package cache Fetching: ...................................................................................... Installing: ...................................................................................... done. - 130 resources (00:36.943) Initialization complete (00:37.007) Fetch http://profiles.ihe.net/PHARM/ihe.pharm.mpd/package-list.json for version check (00:37.009) Load Content (00:37.174) loadPrePages from FetchedFile[/scratch/ig-build-temp-QH9VRC/repo/fsh-generated/includes] as /scratch/ig-build-temp-QH9VRC/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/ig-build-temp-QH9VRC/repo/input/pagecontent] as /scratch/ig-build-temp-QH9VRC/repo/input/pagecontent Processing Conformance Resources (00:37.636) Generating Snapshots (00:37.849) Propagating status (00:38.169) Generating Narratives (00:38.169) Validating Conformance Resources (00:39.700) Validating Resources (00:41.568) Processing Provenance Records (00:41.569) Generating Outputs in /scratch/ig-build-temp-QH9VRC/repo/output (00:41.569) Run Template (00:41.874) onGenerate.checkVersions: [xslt] Processing /scratch/ig-build-temp-QH9VRC/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-QH9VRC/repo/template/versions.txt [xslt] Loading stylesheet /scratch/ig-build-temp-QH9VRC/repo/template/scripts/onGenerate.getVersions.xslt [mkdir] Created dir: /scratch/ig-build-temp-QH9VRC/repo/input-cache/schemas onGenerate.r5-schemas: [mkdir] Created dir: /scratch/ig-build-temp-QH9VRC/repo/input-cache/schemas/R5 [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/ig-build-temp-QH9VRC/repo/input-cache/schemas/R5/fhir-single.xsd [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-QH9VRC/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/ig-build-temp-QH9VRC/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-QH9VRC/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: [mkdir] Created dir: /scratch/ig-build-temp-QH9VRC/repo/input-cache/schemas/R4 [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/ig-build-temp-QH9VRC/repo/input-cache/schemas/R4/fhir-single.xsd [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-QH9VRC/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/ig-build-temp-QH9VRC/repo/input-cache/schemas/R4/xml.xsd [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-QH9VRC/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/ig-build-temp-QH9VRC/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-QH9VRC/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/ig-build-temp-QH9VRC/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/ig-build-temp-QH9VRC/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-QH9VRC/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/ig-build-temp-QH9VRC/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 17 files to /scratch/ig-build-temp-QH9VRC/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/ig-build-temp-QH9VRC/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-QH9VRC/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/ig-build-temp-QH9VRC/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/ig-build-temp-QH9VRC/repo/template/onGenerate-ig-working.1.xml to /scratch/ig-build-temp-QH9VRC/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-QH9VRC/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/ig-build-temp-QH9VRC/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-QH9VRC/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/ig-build-temp-QH9VRC/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/ig-build-temp-QH9VRC/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-QH9VRC/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/ig-build-temp-QH9VRC/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: [java] Warning: no image in /scratch/ig-build-temp-QH9VRC/repo/input/images-source/mma-transaction1.plantuml onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.extend: onGenerate: Template Done (00:44.880) Generating Summary Outputs (00:49.240) Sending Usage Stats to Server (00:50.485) ## Memory (MB): Use = 4869, Free = 13472, Total = 18366, Max =18366 Reclaiming memory... ## Memory (MB): Use = 228, Free = 18044, Total = 18366, Max =18366 Run jekyll: jekyll build --destination "/scratch/ig-build-temp-QH9VRC/repo/output" (in folder /scratch/ig-build-temp-QH9VRC/repo/temp/pages) (00:50.643) Jekyll: Source: /scratch/ig-build-temp-QH9VRC/repo/temp/pages (00:50.975) Jekyll: Generating... (00:50.975) Jekyll: done in 0.737 seconds. (00:51.712) Checking Output HTML (00:52.912) found 856 files (00:52.920) ........................................ ........................................ ... 856 html files, 0 pages invalid xhtml (0%) (00:58.794) ... 58664 links, 0 broken links (0%) (00:58.794) Build final .zip (00:58.794) Final .zip built (00:59.206) Built. Times: loading: 00:00.461, generate: 00:22.163, narrative generation: 00:01.531, realm-rules: 00:00.000, previous-version: 00:00.000, jekyll: 00:01.077, validation: 00:01.854 (#21), template: 00:03.006 (#3) (00:59.804) Validation output in /scratch/ig-build-temp-QH9VRC/repo/output/qa.html Errors: 8, Warnings: 29, Info: 0, Broken Links: 0 (01:00.026) Finished (01:00.027) Done (01:00.027)