INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/IHE/FormatCode --branch master repo DEBUG:root:Time to deadline 35879.997852 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.428847 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.308619 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 140 packages in 7s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.4.0 npm notice Changelog: npm notice Run `npm install -g npm@11.4.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/IHE/FormatCode/ -out /scratch/repo DEBUG:root:Time to deadline 35871.153549 seconds FHIR IG Publisher Version 1.8.26 (Git# d479a7160a38). Built 2025-05-08T09:23:30.587Z (13 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/IHE/FormatCode/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Wednesday, May 21, 2025, 4:04:57 PM Coordinated Universal Time (2025-05-21T16:04:57Z) Build FHIR IG from /scratch/repo (00:00.033 / 00:00.033, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.037, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.040, 97Mb) Load Template from ihe.fhir.template#current (00:01.495 / 00:01.535, 70Mb) Installing ihe.fhir.template#current to the package cache Fetching: Installing ihe.fhir.template#current done. Load Template from fhir.base.template#current (00:01.651 / 00:03.187, 134Mb) Installing fhir.base.template#current to the package cache Fetching: Installing fhir.base.template#current done. Root directory: /scratch/repo (00:05.044 / 00:08.231, 148Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.003 / 00:08.234, 148Mb) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching: Installing hl7.fhir.r4.core#4.0.1 done. Running Terminology Log: /tmp/ohfu-fhir-ig-14579954602248630794.html Connect to Terminology Server at http://tx.fhir.org (00:37.647 / 00:45.882, 149Mb) Installing hl7.fhir.pubpack#0.2.1 to the package cache Fetching: Installing hl7.fhir.pubpack#0.2.1 done. Load Package hl7.fhir.pubpack#0.2.1 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.1.0 done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r4#6.3.0 to the package cache Fetching: Installing hl7.terminology.r4#6.3.0 done. Load Package hl7.terminology.r4#6.3.0 Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#5.2.0 done. Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.fhir.uv.tools.r4#0.5.0 to the package cache Fetching: Installing hl7.fhir.uv.tools.r4#0.5.0 done. Load Package hl7.fhir.uv.tools.r4#0.5.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache Fetching: Installing hl7.fhir.r5.core#5.0.0 done. Initialization complete (00:16.306 / 01:02.188, 365Mb) Load Content (00:00.000 / 01:02.189, 365Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.095 / 01:02.284, 373Mb) Process Loaded Resources (00:00.593 / 01:02.878, 405Mb) Generating Snapshots (00:00.222 / 01:03.100, 429Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/input/data] as /scratch/repo/input/data loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Fetch https://profiles.ihe.net/fhir/ihe.formatcode.fhir/package-list.json for version check (00:00.053 / 01:03.153, 429Mb) Processing Conformance Resources (00:00.131 / 01:03.284, 429Mb) Checking Language (00:00.000 / 01:03.284, 429Mb) Load Dependency Info (00:00.000 / 01:03.285, 429Mb) Load Info (00:00.002 / 01:03.288, 433Mb) Load Paths (00:00.000 / 01:03.289, 433Mb) Check R4 / R4B (00:00.000 / 01:03.289, 433Mb) Assign Comparison Ids (00:00.018 / 01:03.308, 433Mb) Propagating status (00:00.000 / 01:03.308, 433Mb) Generating Narratives (00:00.000 / 01:03.308, 433Mb) Validating Conformance Resources (00:00.869 / 01:04.178, 488Mb) Check profiles & code systems (00:12.368 / 01:16.547, 822Mb) Check realm rules (00:00.001 / 01:16.548, 822Mb) Previous Version Comparison (00:00.000 / 01:16.548, 822Mb) Installing ihe.formatcode.fhir#1.3.0 to the package cache Fetching: Installing ihe.formatcode.fhir#1.3.0 done. Installing hl7.terminology.r4#5.5.0 to the package cache Fetching: Installing hl7.terminology.r4#5.5.0 done. Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache Fetching: Installing hl7.fhir.uv.extensions.r4#5.1.0 done. Validating Resources (00:15.726 / 01:32.275, 1004Mb) Processing Provenance Records (00:00.495 / 01:32.770, 1Gb) Generating Outputs in /scratch/repo/output (00:00.059 / 01:32.829, 1Gb) Generate Native Outputs (00:00.299 / 01:33.129, 1Gb) Run Template (00:02.738 / 01:35.867, 1Gb) Generate HTML Outputs (00:01.021 / 01:36.888, 1Gb) Generate Spreadsheets (00:04.043 / 01:40.932, 680Mb) Generate Summaries (00:00.000 / 01:40.932, 680Mb) Generating Summary Outputs (00:00.000 / 01:40.933, 680Mb) DB Cumulative Time invested: 00:00:02.512 Sending Usage Stats to Server (00:03.489 / 01:44.422, 689Mb) ## Memory (MB): Use = 689, Free = 18318, Total = 19008, Max = 19008 (00:00.011 / 01:44.433, 691Mb) Reclaiming memory... (00:00.000 / 01:44.434, 691Mb) ## Memory (MB): Use = 560, Free = 18447, Total = 19008, Max = 19008 (00:00.720 / 01:45.155, 568Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.008 / 01:45.163, 571Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.008 / 01:45.172, 571Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 01:45.172, 571Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 01:45.172, 571Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.618 / 01:45.790, 592Mb) Jekyll: Generating... (00:00.000 / 01:45.791, 592Mb) Jekyll: done in 0.873 seconds. (00:00.872 / 01:46.663, 601Mb) Checking Output HTML (00:01.058 / 01:47.722, 703Mb) found 601 files (00:00.006 / 01:47.728, 703Mb) ........................................ ........................................ ... 601 html files, 0 pages invalid xhtml (0%) (00:02.133 / 01:49.861, 1Gb) ... 8163 links, 0 broken links (0%) (00:00.000 / 01:49.862, 1Gb) Generate fragment-usage-analysis.csv (00:00.000 / 01:49.862, 1Gb) Build final .zip (00:00.008 / 01:49.871, 1Gb) Final .zip built (00:00.901 / 01:50.772, 1Gb) Waiting for dependency analysis to complete Waiting for dependency analysis to complete Waiting for dependency analysis to complete Waiting for dependency analysis to complete Waiting for dependency analysis to complete Waiting for dependency analysis to complete Waiting for dependency analysis to complete Built. Times: loading: 00:01.094, generate: 00:55.825, narrative generation: 00:00.869, realm-rules: 00:00.000, previous-version: 00:15.709, jekyll: 00:01.544, validation: 00:12.862 (#5), template: 00:01.034 (#3) (00:08.338 / 01:59.111, 1Gb) Generating QA (00:00.000 / 01:59.111, 1Gb) Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 2, Info: 1, Broken Links: 0 (00:00.167 / 01:59.279, 1Gb) Finished. Max Memory Used = 1Gb (00:00.003 / 01:59.283, 1Gb)