INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7NZ/nzf --branch main repo DEBUG:root:Time to deadline 35879.997897 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.480027 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.455101 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.7.0 npm notice Changelog: npm notice Run `npm install -g npm@11.7.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7NZ/nzf/ -out /scratch/repo DEBUG:root:Time to deadline 35870.150927 seconds FHIR IG Publisher Version 2.0.28 (Git# 6c0c59a855ec). Built 2025-12-08T04:22:21.813Z (68 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7NZ/nzf/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Thursday, December 11, 2025, 12:50:54 AM Coordinated Universal Time (2025-12-11T00:50:54Z) Build FHIR IG from /scratch/repo (00:00.031 / 00:00.031, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.034, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.038, 97Mb) Run Sushi on /scratch/repo (00:00.010 / 00:00.048, 97Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.819 / 00:00.867, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.868, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.869, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.869, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.870, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.854 / 00:01.724, 113Mb) Sushi: info Importing FSH text... (00:00.153 / 00:01.878, 113Mb) Sushi: info Preprocessed 36 documents with 23 aliases. (00:00.325 / 00:02.204, 113Mb) Sushi: info Imported 48 definitions and 0 instances. (00:00.027 / 00:02.231, 113Mb) Sushi: warn Detected FSH entity definitions with duplicate names. While FSH allows for duplicate names across entity types, they can lead to ambiguous results when referring to these entities by name elsewhere (e.g., in references). Consider using unique names in FSH declarations and assigning duplicated names using caret assignment rules instead. Detected duplicate names: NzfPageSize, NzfDocumentType. (00:00.009 / 00:02.241, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.193 / 00:02.434, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.686 / 00:03.121, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:03.122, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.839 / 00:03.961, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.003 / 00:03.964, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.090 / 00:04.055, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 7.0.0 (00:00.549 / 00:04.605, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#7.0.0 from https://packages.fhir.org/hl7.terminology.r4/7.0.0 (00:00.000 / 00:04.605, 113Mb) Sushi: info Downloaded hl7.terminology.r4#7.0.0 (00:03.143 / 00:07.749, 113Mb) Sushi: info Cached hl7.terminology.r4#7.0.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#7.0.0 (00:00.001 / 00:07.750, 113Mb) Sushi: info Loaded hl7.terminology.r4#7.0.0 with 4096 resources (00:01.744 / 00:09.494, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.475 / 00:09.970, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:09.970, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.561 / 00:11.532, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:11.533, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.341 / 00:11.875, 113Mb) Sushi: info Attempting to download hl7.fhir.r4b.core#4.3.0 from https://packages.fhir.org/hl7.fhir.r4b.core/4.3.0 (00:00.001 / 00:11.876, 113Mb) Sushi: info Downloaded hl7.fhir.r4b.core#4.3.0 (00:03.261 / 00:15.137, 113Mb) Sushi: info Cached hl7.fhir.r4b.core#4.3.0 to /home/fhiruser/.fhir/packages/hl7.fhir.r4b.core#4.3.0 (00:00.001 / 00:15.139, 113Mb) Sushi: info Loaded hl7.fhir.r4b.core#4.3.0 with 3497 resources (00:01.617 / 00:16.756, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 8 resources (00:00.017 / 00:16.774, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.024 / 00:16.798, 113Mb) Sushi: warn Extension InteractionsRoute has a description field that should not be empty. (00:03.807 / 00:20.606, 113Mb) Sushi: warn Extension InteractionSeverity has a description field that should not be empty. (00:00.096 / 00:20.702, 113Mb) Sushi: warn Extension InteractionWarning has a description field that should not be empty. (00:00.074 / 00:20.777, 113Mb) Sushi: warn Extension InteractionEvidence has a description field that should not be empty. (00:00.079 / 00:20.857, 113Mb) Sushi: warn Extension InteractionModificationDate has a description field that should not be empty. (00:00.087 / 00:20.944, 113Mb) Sushi: warn Extension InteractionReviewDate has a description field that should not be empty. (00:00.037 / 00:20.981, 113Mb) Sushi: warn Extension InteractionTextLink has a description field that should not be empty. (00:00.055 / 00:21.036, 113Mb) Sushi: info Converted 33 FHIR StructureDefinitions. (00:00.491 / 00:21.528, 113Mb) Sushi: info Converted 6 FHIR CodeSystems. (00:00.160 / 00:21.689, 113Mb) Sushi: info Converted 9 FHIR ValueSets. (00:00.286 / 00:21.975, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 00:21.977, 113Mb) Sushi: info Exported 48 FHIR resources as JSON. (00:00.063 / 00:22.040, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.003 / 00:22.044, 113Mb) Sushi: warn Files not in the supported file types (.md and .xml) were detected. (00:00.025 / 00:22.070, 113Mb) Sushi: File: /scratch/repo/input/pagecontent (00:00.000 / 00:22.070, 113Mb) Sushi: info Generated ImplementationGuide-hl7.org.nz.fhir.ig.formulary.json (00:00.004 / 00:22.075, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:22.075, 113Mb) Sushi: info The sample-ig located at https://github.com/FHIR/sample-ig contains scripts useful for downloading and running the IG Publisher. (00:00.000 / 00:22.075, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.002 / 00:22.078, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:22.078, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:22.078, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:22.078, 113Mb) Sushi: | | 4 | 29 | 0 | 0 | | (00:00.000 / 00:22.079, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:22.079, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:22.080, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:22.080, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:22.080, 113Mb) Sushi: | | 9 | 6 | 0 | | (00:00.000 / 00:22.080, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:22.081, 113Mb) Sushi: | | (00:00.000 / 00:22.081, 113Mb) Sushi: =================================================================== (00:00.000 / 00:22.081, 113Mb) Sushi: | Keep swimming, Dory. 0 Errors 9 Warnings | (00:00.000 / 00:22.081, 113Mb) Sushi: =================================================================== (00:00.000 / 00:22.082, 113Mb) Root directory: /scratch/repo (00:00.039 / 00:22.122, 113Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.747 / 00:22.869, 38Mb) Load Template from fhir.base.template#current (00:00.670 / 00:23.540, 85Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:06.150 / 00:29.691, 148Mb) Core Package hl7.fhir.r4b.core#4.3.0 (00:00.000 / 00:29.691, 148Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-491825666929883559.html Connect to Terminology Server at http://tx.fhir.org (00:31.702 / 01:01.394, 680Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Version mismatch. This IG is version 4.3.0, while the IG 'hl7.terminology.r4' is from version 4.0.1 (will try to run anyway) (00:03.435 / 01:04.830, 800Mb) Load Package hl7.terminology.r4#7.0.0 Version mismatch. This IG is version 4.3.0, while the IG 'hl7.fhir.uv.extensions.r4' is from version 4.0.1 (will try to run anyway) (00:01.560 / 01:06.390, 443Mb) Load Package hl7.fhir.uv.extensions.r4#5.2.0 Version mismatch. This IG is version 4.3.0, while the IG 'hl7.fhir.uv.tools.r4' is from version 4.0.1 (will try to run anyway) (00:02.750 / 01:09.140, 699Mb) Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:02.656 / 01:11.796, 947Mb) Load IG (00:00.000 / 01:11.797, 947Mb) Load Content (00:00.003 / 01:11.801, 949Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.294 / 01:12.095, 448Mb) Process Loaded Resources (00:01.651 / 01:13.747, 527Mb) Generating Snapshots (00:00.478 / 01:14.225, 583Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch https://fhir-docs.nzf.org.nz/package-list.json for version check (00:01.459 / 01:15.685, 791Mb) Checking Language (00:00.384 / 01:16.070, 791Mb) Load Dependency Info (00:00.003 / 01:16.073, 791Mb) Load Info (00:00.002 / 01:16.075, 791Mb) Load Paths (00:00.000 / 01:16.076, 795Mb) Check R4 / R4B (00:00.000 / 01:16.077, 795Mb) Assign Comparison Ids (00:00.047 / 01:16.124, 803Mb) Propagating status (00:00.000 / 01:16.124, 803Mb) Generating Narratives (00:00.000 / 01:16.125, 803Mb) Validating Conformance Resources (00:03.514 / 01:19.640, 608Mb) Check profiles & code systems (00:15.308 / 01:34.948, 1Gb) Check realm rules (00:00.004 / 01:34.952, 1Gb) Previous Version Comparison (00:00.000 / 01:34.953, 1Gb) Checking for Bundles to sign (00:00.031 / 01:34.984, 1Gb) Validating Resources (00:00.000 / 01:34.985, 1Gb) Processing Provenance Records (00:05.433 / 01:40.418, 1Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 01:40.418, 1Gb) Generate Native Outputs (00:00.362 / 01:40.781, 1Gb) Run Template (00:05.316 / 01:46.097, 838Mb) Generate HTML Outputs (00:01.654 / 01:47.752, 830Mb) XSLT Error: Error reported by XML parser: The markup in the document following the root element must be well-formed. Exception generating xslt page /scratch/repo/temp/pages/_includes/extensions-intro.html for _includes/extensions-intro.html in /scratch/repo/temp/pages: org.xml.sax.SAXParseException; lineNumber: 9; columnNumber: 2; The markup in the document following the root element must be well-formed. (00:19.794 / 02:07.547, 2Gb) Generate Spreadsheets (00:00.004 / 02:07.551, 2Gb) Generate Summaries (00:06.046 / 02:13.597, 3Gb) Generating Summary Outputs (00:00.000 / 02:13.598, 3Gb) DB Cumulative Time invested: 00:00:07.69 Sending Usage Stats to Server (00:05.174 / 02:18.772, 1Gb) ## Memory (MB): Use = 1329, Free = 17678, Total = 19008, Max = 19008 (00:00.015 / 02:18.787, 1Gb) Reclaiming memory... (00:00.000 / 02:18.788, 1Gb) ## Memory (MB): Use = 758, Free = 18249, Total = 19008, Max = 19008 (00:01.000 / 02:19.788, 765Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 02:19.789, 765Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 02:19.790, 765Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 02:19.790, 765Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 02:19.790, 765Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.701 / 02:20.491, 781Mb) Jekyll: Generating... (00:00.000 / 02:20.491, 781Mb) Jekyll: done in 2.911 seconds. (00:02.910 / 02:23.402, 781Mb) Checking Output HTML (00:02.049 / 02:25.451, 1Gb) Processed /scratch/repo/output - % reduction = 99 (35576771 ==> 484733) found 1365 files (00:01.394 / 02:26.846, 2Gb) ........................................ ........................................ ... 1365 html files, 0 pages invalid xhtml (0%) (00:24.005 / 02:50.851, 2Gb) ... 136999 links, 1 broken links (0%) (00:00.000 / 02:50.851, 2Gb) Generate fragment-usage-analysis.csv (00:00.000 / 02:50.851, 2Gb) Build final .zip (00:00.008 / 02:50.860, 2Gb) Final .zip built (00:01.578 / 02:52.438, 2Gb) Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Built. Times: loading: 00:04.269, generate: 02:11.522, narrative generation: 00:03.514, realm-rules: 00:00.000, previous-version: 00:00.000, jekyll: 00:03.632, validation: 00:20.516 (#57), template: 00:01.668 (#3) (00:35.154 / 03:27.593, 3Gb) Generating QA (00:00.000 / 03:27.593, 3Gb) Internal error in location for message: 'Error @1, 2: Found / expecting a token name', loc = '/scratch/repo/output/data.html', err = 'Illegal HTML: illegal html element: ins (as unregistered medicines legally may only be prescribed by' Validation output in /scratch/repo/output/qa.html Errors: 136, Warnings: 230, Info: 34, Broken Links: 1 (00:00.684 / 03:28.277, 3Gb) Finished @ 12/11/25, 12:54 AM. Max Memory Used = 3Gb (00:00.047 / 03:28.325, 3Gb)