INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/vrdr --branch master repo DEBUG:root:Time to deadline 35879.998025 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35873.912713 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35872.692872 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 140 packages in 6s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.2 npm notice Changelog: npm notice Run `npm install -g npm@11.5.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/vrdr/ -out /scratch/repo DEBUG:root:Time to deadline 35866.194044 seconds FHIR IG Publisher Version 2.0.12 (Git# 1e7f5af908a3). Built 2025-07-27T20:11:20.240Z (9 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/vrdr/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Wednesday, August 6, 2025, 5:59:36 PM Coordinated Universal Time (2025-08-06T17:59:36Z) Build FHIR IG from /scratch/repo (00:00.027 / 00:00.027, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.029, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.032, 97Mb) Found dependency on hl7.fhir.us.core#5.0.1 in Sushi config. Pre-installing (00:00.004 / 00:00.037, 97Mb) Installing hl7.fhir.us.core#5.0.1 to the package cache  Fetching:  Installing hl7.fhir.us.core#5.0.1  done. Found dependency on hl7.fhir.us.vr-common-library#2.0.0 in Sushi config. Pre-installing (00:03.648 / 00:03.685, 97Mb) Installing hl7.fhir.us.vr-common-library#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.vr-common-library#2.0.0  done. Found dependency on us.cdc.phinvads#0.12.0 in Sushi config. Pre-installing (00:01.039 / 00:04.725, 105Mb) Installing us.cdc.phinvads#0.12.0 to the package cache  Fetching:  Installing us.cdc.phinvads#0.12.0  done. Found dependency on hl7.fhir.us.odh#1.3.0 in Sushi config. Pre-installing (00:12.446 / 00:17.171, 424Mb) Installing hl7.fhir.us.odh#1.3.0 to the package cache  Fetching:  Installing hl7.fhir.us.odh#1.3.0  done. Run Sushi on /scratch/repo (00:00.518 / 00:17.690, 425Mb) Sushi: info Running SUSHI v3.16.3 (implements FHIR Shorthand specification v3.0.0) (00:00.750 / 00:18.441, 434Mb) Sushi: info Arguments: (00:00.000 / 00:18.442, 434Mb) Sushi: info --require-latest (00:00.000 / 00:18.442, 434Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:18.442, 434Mb) Sushi: info /scratch/repo (00:00.000 / 00:18.442, 434Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.728 / 00:19.171, 434Mb) Sushi: info Importing FSH text... (00:00.161 / 00:19.332, 434Mb) Sushi: warn RuleSet UnmatchedMapConcept contains unused parameters: targetcode, targetdisplay (00:00.489 / 00:19.821, 434Mb) Sushi: File: /scratch/repo/input/fsh/rulesets/DEF_ConceptMapRuleSets.fsh (00:00.000 / 00:19.822, 434Mb) Sushi: Line: 29 - 35 (00:00.000 / 00:19.822, 434Mb) Sushi: info Preprocessed 129 documents with 38 aliases. (00:00.041 / 00:19.864, 434Mb) Sushi: info Imported 87 definitions and 116 instances. (00:00.607 / 00:20.472, 434Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.143 / 00:20.615, 434Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.7.1 (00:00.689 / 00:21.305, 434Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.7.1 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.7.1 (00:00.001 / 00:21.306, 434Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.7.1 (00:01.005 / 00:22.311, 434Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.7.1 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.7.1 (00:00.003 / 00:22.314, 434Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.7.1 with 105 resources (00:00.080 / 00:22.395, 434Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.487 / 00:22.882, 434Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:22.883, 434Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.787 / 00:25.670, 434Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:25.671, 434Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.996 / 00:27.668, 434Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.489 / 00:28.157, 434Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:28.158, 434Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.541 / 00:29.699, 434Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.002 / 00:29.702, 434Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.408 / 00:30.110, 434Mb) Sushi: info Loaded hl7.fhir.us.core#5.0.1 with 194 resources (00:00.123 / 00:30.234, 434Mb) Sushi: info Loaded hl7.fhir.us.vr-common-library#2.0.0 with 91 resources (00:00.079 / 00:30.314, 434Mb) Sushi: info Loaded us.cdc.phinvads#0.12.0 with 1967 resources (00:02.509 / 00:32.823, 434Mb) Sushi: info Loaded hl7.fhir.us.odh#1.3.0 with 10 resources (00:00.027 / 00:32.851, 434Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:32.852, 434Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.355 / 00:36.207, 434Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.003 / 00:36.211, 434Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.560 / 00:37.771, 434Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.012 / 00:37.784, 434Mb) Sushi: info Converting FSH to FHIR resources... (00:00.047 / 00:37.831, 434Mb) Sushi: info Converted 49 FHIR StructureDefinitions. (00:11.576 / 00:49.408, 434Mb) Sushi: info Converted 14 FHIR CodeSystems. (00:00.387 / 00:49.796, 434Mb) Sushi: info Converted 24 FHIR ValueSets. (00:00.588 / 00:50.384, 434Mb) Sushi: info Converted 116 FHIR instances. (00:16.449 / 01:06.834, 434Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 01:06.835, 434Mb) Sushi: info Exported 203 FHIR resources as JSON. (00:00.367 / 01:07.203, 434Mb) Sushi: info Assembling Implementation Guide sources... (00:00.006 / 01:07.210, 434Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.us.vrdr.json (00:00.574 / 01:07.785, 434Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 01:07.785, 434Mb) Sushi: info The sample-ig located at https://github.com/FHIR/sample-ig contains scripts useful for downloading and running the IG Publisher. (00:00.000 / 01:07.785, 434Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.002 / 01:07.788, 434Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:07.788, 434Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 01:07.788, 434Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:07.788, 434Mb) Sushi: | | 42 | 7 | 0 | 0 | | (00:00.000 / 01:07.788, 434Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:07.788, 434Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:07.788, 434Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 01:07.788, 434Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:07.789, 434Mb) Sushi: | | 24 | 14 | 116 | | (00:00.000 / 01:07.789, 434Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:07.789, 434Mb) Sushi: | | (00:00.000 / 01:07.789, 434Mb) Sushi: =================================================================== (00:00.000 / 01:07.789, 434Mb) Sushi: | Sailors, take warning! 0 Errors 1 Warning | (00:00.000 / 01:07.789, 434Mb) Sushi: =================================================================== (00:00.000 / 01:07.790, 434Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.815 / 01:08.606, 56Mb) Load Template from hl7.fhir.template#current (00:00.695 / 01:09.301, 57Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:00.637 / 01:09.938, 97Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir.base.template#current (00:00.340 / 01:10.279, 97Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:04.477 / 01:14.756, 409Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 01:14.759, 409Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-8691945376106229710.html Connect to Terminology Server at http://tx.fhir.org (00:26.537 / 01:41.296, 942Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Installing hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1  done. Load Package hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1 Installing hl7.terminology.r4#3.1.0 to the package cache  Fetching:  Installing hl7.terminology.r4#3.1.0  done. Load Package hl7.terminology.r4#3.1.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#2.0.0  done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Installing us.nlm.vsac#0.7.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.7.0  done. Load Package us.nlm.vsac#0.7.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (01:33.413 / 03:14.709, 743Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Load Package hl7.fhir.us.core#5.0.1 Installing hl7.terminology.r4#6.0.2 to the package cache  Fetching:  Installing hl7.terminology.r4#6.0.2  done. Load Package hl7.terminology.r4#6.0.2 Installing hl7.fhir.uv.extensions.r4#5.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Installing us.nlm.vsac#0.19.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.19.0  done. Load Package us.nlm.vsac#0.19.0 Load Package us.cdc.phinvads#0.12.0 Load Package hl7.fhir.us.vr-common-library#2.0.0 Load Package us.cdc.phinvads#0.12.0 Installing hl7.terminology.r4#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.0.0  done. Load Package hl7.terminology.r4#5.0.0 Load Package hl7.fhir.us.odh#1.3.0 Load Package hl7.fhir.uv.tools.r4#0.7.1 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:48.535 / 04:03.245, 950Mb) Load IG (00:00.000 / 04:03.245, 950Mb) Load Content (00:00.001 / 04:03.247, 950Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.171 / 04:03.418, 966Mb) Process Loaded Resources (00:04.216 / 04:07.635, 1Gb) Generating Snapshots (00:01.491 / 04:09.126, 656Mb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/vrdr/package-list.json for version check (00:05.362 / 04:14.489, 1Gb) Processing Conformance Resources (00:00.381 / 04:14.871, 678Mb) Checking Language (00:00.000 / 04:14.871, 678Mb) Load Dependency Info (00:00.005 / 04:14.876, 678Mb) Load Info (00:00.002 / 04:14.879, 678Mb) Load Paths (00:00.001 / 04:14.880, 682Mb) Check R4 / R4B (00:00.000 / 04:14.881, 682Mb) Assign Comparison Ids (00:00.103 / 04:14.984, 699Mb) Propagating status (00:00.000 / 04:14.985, 699Mb) Generating Narratives (00:00.182 / 04:15.167, 811Mb) Validating Conformance Resources (00:09.935 / 04:25.103, 907Mb) Check profiles & code systems (01:02.619 / 05:27.722, 1Gb) Check realm rules (00:00.012 / 05:27.735, 1Gb) Installing hl7.fhir.us.core#8.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#8.0.0  done. US Core Comparisons Finished Previous Version Comparison (00:55.648 / 06:23.384, 5Gb) Installing hl7.fhir.us.vrdr#true to the package cache  Fetching: org.hl7.fhir.exceptions.FHIRException: Unable to find package hl7.fhir.us.vrdr#true at org.hl7.fhir.utilities.npm.FilesystemPackageCacheManager.loadPackage(FilesystemPackageCacheManager.java:695) at org.hl7.fhir.igtools.publisher.comparators.PreviousVersionComparator.startChecks(PreviousVersionComparator.java:201) at org.hl7.fhir.igtools.publisher.Publisher.checkConformanceResources(Publisher.java:6676) at org.hl7.fhir.igtools.publisher.Publisher.loadConformance2(Publisher.java:6485) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1168) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1023) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:15805) Checking for Bundles to sign (00:01.256 / 06:24.640, 5Gb) Validating Resources (00:00.000 / 06:24.641, 5Gb) Processing Provenance Records (00:40.089 / 07:04.730, 11Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 07:04.731, 11Gb) Generate Native Outputs (00:00.246 / 07:04.978, 11Gb) Run Template (00:20.670 / 07:25.649, 3Gb) Generate HTML Outputs (00:02.997 / 07:28.647, 3Gb) Generate Spreadsheets (00:49.371 / 08:18.018, 9Gb) Generate Summaries (00:12.622 / 08:30.640, 4Gb) Generating Summary Outputs (00:00.000 / 08:30.640, 4Gb) DB Cumulative Time invested: 00:00:06.748 Sending Usage Stats to Server (00:26.629 / 08:57.269, 10Gb) ## Memory (MB): Use = 10693, Free = 8314, Total = 19008, Max = 19008 (00:00.016 / 08:57.286, 10Gb) Reclaiming memory... (00:00.000 / 08:57.286, 10Gb) ## Memory (MB): Use = 1147, Free = 17860, Total = 19008, Max = 19008 (00:01.705 / 08:58.992, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 08:58.994, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 08:58.994, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 08:58.994, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 08:58.994, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.529 / 08:59.523, 1Gb) Jekyll: Generating... (00:00.000 / 08:59.523, 1Gb) Jekyll: done in 9.435 seconds. (00:09.434 / 09:08.958, 1Gb) Checking Output HTML (00:07.932 / 09:16.890, 5Gb) found 2828 files (00:00.015 / 09:16.905, 5Gb) ........................................ ........................................ ... 2828 html files, 0 pages invalid xhtml (0%) (01:08.141 / 10:25.047, 1Gb) ... 854198 links, 0 broken links (0%) (00:00.000 / 10:25.047, 1Gb) Generate fragment-usage-analysis.csv (00:00.000 / 10:25.047, 1Gb) Build final .zip (00:00.008 / 10:25.056, 1Gb) Final .zip built (00:18.953 / 10:44.009, 1Gb) Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1 Sending usage stats failed: Connection timed out  done. Built. Times: loading: 00:11.624, generate: 07:09.815, propagating status: 00:00.182, narrative generation: 00:09.934, realm-rules: 00:55.648, previous-version: 00:01.167, jekyll: 00:10.069, validation: 01:42.361 (#204), template: 00:03.007 (#3) (00:40.678 / 11:24.687, 3Gb) Generating QA (00:00.000 / 11:24.687, 3Gb) Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 240, Info: 233, Broken Links: 0 (00:00.982 / 11:25.670, 4Gb) Finished @ 8/6/25, 6:11 PM. Max Memory Used = 11Gb (00:00.062 / 11:25.733, 4Gb)