INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/v2-to-fhir --branch master repo DEBUG:root:Time to deadline 35879.997719 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35870.89852 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35869.879093 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.1 npm notice Changelog: npm notice Run `npm install -g npm@11.6.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/v2-to-fhir/ -out /scratch/repo DEBUG:root:Time to deadline 35862.379216 seconds FHIR IG Publisher Version 2.0.19 (Git# e7076c8963f4). Built 2025-10-03T18:07:42.122Z (3 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/v2-to-fhir/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, October 7, 2025, 5:48:18 PM Coordinated Universal Time (2025-10-07T17:48:18Z) Build FHIR IG from /scratch/repo (00:00.021 / 00:00.022, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.024, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.027, 97Mb) Run Sushi on /scratch/repo (00:00.008 / 00:00.035, 97Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.566 / 00:00.601, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.602, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.602, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.603, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.603, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.665 / 00:01.269, 113Mb) Sushi: info Importing FSH text... (00:00.122 / 00:01.391, 113Mb) Sushi: info Preprocessed 266 documents with 0 aliases. (00:04.222 / 00:05.614, 113Mb) Sushi: info Imported 3 definitions and 263 instances. (00:00.439 / 00:06.054, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.114 / 00:06.168, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.587 / 00:06.756, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.000 / 00:06.756, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.821 / 00:07.578, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.002 / 00:07.581, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.056 / 00:07.637, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.467 / 00:08.104, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:08.105, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.792 / 00:10.897, 113Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:10.898, 113Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.240 / 00:12.139, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.469 / 00:12.609, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:12.609, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.483 / 00:14.093, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:14.094, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.331 / 00:14.426, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:14.426, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.056 / 00:17.482, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:17.484, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.159 / 00:18.644, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 0 resources (00:00.008 / 00:18.652, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.017 / 00:18.669, 113Mb) Sushi: info Converted 2 FHIR StructureDefinitions. (00:00.455 / 00:19.125, 113Mb) Sushi: info Converted 1 FHIR CodeSystems. (00:00.030 / 00:19.155, 113Mb) Sushi: info Converted 263 FHIR instances. (02:17.221 / 02:36.376, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 02:36.377, 113Mb) Sushi: info Exported 266 FHIR resources as JSON. (00:00.121 / 02:36.499, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.005 / 02:36.504, 113Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.uv.v2mappings.json (00:00.010 / 02:36.515, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 02:36.516, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 02:36.517, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:36.518, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 02:36.518, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 02:36.518, 113Mb) Sushi: | | 0 | 2 | 0 | 0 | | (00:00.000 / 02:36.518, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:36.518, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:36.519, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 02:36.519, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 02:36.519, 113Mb) Sushi: | | 0 | 1 | 263 | | (00:00.000 / 02:36.519, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:36.520, 113Mb) Sushi: | | (00:00.000 / 02:36.520, 113Mb) Sushi: =================================================================== (00:00.000 / 02:36.520, 113Mb) Sushi: | You're making waves now! 0 Errors 0 Warnings | (00:00.000 / 02:36.520, 113Mb) Sushi: =================================================================== (00:00.000 / 02:36.520, 113Mb) Root directory: /scratch/repo (00:00.026 / 02:36.547, 113Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.529 / 02:37.076, 37Mb) Load Template from hl7.fhir.template#1.0.0 (00:00.535 / 02:37.611, 94Mb) Installing hl7.fhir.template#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.template#1.0.0  done.  Load Template from hl7.base.template#1.0.0 (00:01.049 / 02:38.661, 63Mb) Installing hl7.base.template#1.0.0 to the package cache  Fetching:  Installing hl7.base.template#1.0.0  done.  Load Template from fhir.base.template#1.0.0 (00:00.338 / 02:38.999, 71Mb) Installing fhir.base.template#1.0.0 to the package cache  Fetching:  Installing fhir.base.template#1.0.0  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:03.823 / 02:42.822, 383Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 02:42.823, 383Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-9734900171233226568.html Connect to Terminology Server at http://tx.fhir.org (00:25.670 / 03:08.493, 605Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:08.396 / 03:16.890, 355Mb) Load IG (00:00.000 / 03:16.890, 355Mb) Load Content (00:00.000 / 03:16.891, 355Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.114 / 03:17.005, 370Mb) Process Loaded Resources (00:02.190 / 03:19.196, 1Gb) Generating Snapshots (00:02.605 / 03:21.802, 662Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/uv/v2mappings/package-list.json for version check (00:00.173 / 03:21.975, 686Mb) Processing Conformance Resources (00:00.158 / 03:22.134, 702Mb) Checking Language (00:00.000 / 03:22.134, 702Mb) Load Dependency Info (00:00.005 / 03:22.140, 710Mb) Load Info (00:00.001 / 03:22.142, 710Mb) Load Paths (00:00.000 / 03:22.143, 715Mb) Check R4 / R4B (00:00.000 / 03:22.143, 715Mb) Assign Comparison Ids (00:00.258 / 03:22.401, 886Mb) Propagating status (00:00.000 / 03:22.402, 886Mb) Generating Narratives (00:00.015 / 03:22.417, 886Mb) Validating Conformance Resources (00:02.479 / 03:24.896, 678Mb) Check profiles & code systems (00:38.349 / 04:03.246, 1Gb) Check realm rules (00:00.001 / 04:03.248, 1Gb) Previous Version Comparison (00:00.000 / 04:03.248, 1Gb) Installing hl7.fhir.uv.v2mappings#1.0.0-ballot to the package cache  Fetching:  Installing hl7.fhir.uv.v2mappings#1.0.0-ballot  done. Installing hl7.terminology.r4#5.3.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.3.0  done. Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Checking for Bundles to sign (00:08.758 / 04:12.007, 2Gb) Validating Resources (00:00.000 / 04:12.007, 2Gb) Processing Provenance Records (00:00.061 / 04:12.068, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 04:12.069, 2Gb) Generate Native Outputs (00:00.258 / 04:12.327, 2Gb) Run Template (00:27.609 / 04:39.937, 1Gb) Generate HTML Outputs (00:02.464 / 04:42.401, 1Gb) Generate Spreadsheets (00:07.721 / 04:50.123, 1Gb) Generate Summaries (00:01.059 / 04:51.182, 1Gb) Generating Summary Outputs (00:00.000 / 04:51.183, 1Gb) Table of contents has a section with more than 222 entries. Collapsing will not work reliably DB Cumulative Time invested: 00:00:21.522 Sending Usage Stats to Server (00:10.458 / 05:01.641, 2Gb) ## Memory (MB): Use = 2345, Free = 16662, Total = 19008, Max = 19008 (00:00.012 / 05:01.654, 2Gb) Reclaiming memory... (00:00.000 / 05:01.654, 2Gb) ## Memory (MB): Use = 961, Free = 18038, Total = 19008, Max = 19008 (00:00.790 / 05:02.444, 977Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 05:02.445, 977Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 05:02.446, 977Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 05:02.446, 977Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 05:02.446, 977Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.403 / 05:02.849, 993Mb) Jekyll: Generating... (00:00.000 / 05:02.849, 993Mb) Jekyll: done in 9.317 seconds. (00:09.316 / 05:12.165, 1001Mb) Checking Output HTML (00:02.173 / 05:14.339, 2Gb) found 3261 files (00:00.019 / 05:14.359, 2Gb) ........................................ ........................................ ... 3261 html files, 0 pages invalid xhtml (0%) (00:28.530 / 05:42.889, 5Gb) ... 473373 links, 0 broken links (0%) (00:00.000 / 05:42.889, 5Gb) Generate fragment-usage-analysis.csv (00:00.000 / 05:42.889, 5Gb) Build final .zip (00:00.007 / 05:42.897, 5Gb) Final .zip built (00:02.824 / 05:45.722, 5Gb) Built. Times: loading: 00:05.243, generate: 02:26.677, propagating status: 00:00.015, narrative generation: 00:02.478, realm-rules: 00:00.000, previous-version: 00:08.713, jekyll: 00:09.768, validation: 00:38.339 (#267), template: 00:02.472 (#3) (00:03.091 / 05:48.813, 5Gb) Generating QA (00:00.000 / 05:48.813, 5Gb) Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 0, Info: 3, Broken Links: 0 (00:00.393 / 05:49.206, 6Gb) Finished @ 10/7/25, 5:54 PM. Max Memory Used = 6Gb (00:00.056 / 05:49.263, 6Gb)