INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/sdc --branch master repo DEBUG:root:Time to deadline 35879.998044 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35876.370722 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35875.402024 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/sdc/ -out /scratch/repo DEBUG:root:Time to deadline 35867.651838 seconds FHIR IG Publisher Version 2.0.22 (Git# 6bbdf7dc5537). Built 2025-10-22T10:27:38.176Z (9 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/sdc/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Wednesday, October 22, 2025, 8:08:54 PM Coordinated Universal Time (2025-10-22T20:08:54Z) Build FHIR IG from /scratch/repo (00:00.026 / 00:00.027, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.030, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.033, 97Mb) Found dependency on hl7.fhir.r4.examples#4.0.1 in Sushi config. Pre-installing (00:00.005 / 00:00.039, 97Mb) Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Found dependency on hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1 in Sushi config. Pre-installing (00:32.579 / 00:32.619, 663Mb) Installing hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1  done. Found dependency on hl7.fhir.extensions.r5#4.0.1 in Sushi config. Pre-installing (00:00.940 / 00:33.559, 704Mb) Installing hl7.fhir.extensions.r5#4.0.1 to the package cache  Fetching: Error fetching https://packages2.fhir.org/packages/hl7.fhir.extensions.r5: Not Found Error fetching https://packages.fhir.org/hl7.fhir.extensions.r5: Not Found Unable to install hl7.fhir.extensions.r5#4.0.1: Unable to resolve package id hl7.fhir.extensions.r5#4.0.1 (00:01.201 / 00:34.760, 752Mb) Trying to go on (00:00.000 / 00:34.761, 752Mb) Run Sushi on /scratch/repo (00:00.002 / 00:34.763, 752Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.795 / 00:35.559, 760Mb) Sushi: info Arguments: (00:00.000 / 00:35.559, 760Mb) Sushi: info --require-latest (00:00.000 / 00:35.559, 760Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:35.560, 760Mb) Sushi: info /scratch/repo (00:00.000 / 00:35.560, 760Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:01.114 / 00:36.675, 760Mb) Sushi: info Importing FSH text... (00:00.182 / 00:36.857, 760Mb) Sushi: info Preprocessed 210 documents with 112 aliases. (00:01.960 / 00:38.818, 760Mb) Sushi: info Imported 117 definitions and 114 instances. (00:01.240 / 00:40.058, 760Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.261 / 00:40.319, 760Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.613 / 00:40.932, 760Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:40.933, 760Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.843 / 00:41.777, 760Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.003 / 00:41.781, 760Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.090 / 00:41.871, 760Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.474 / 00:42.345, 760Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:42.346, 760Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:03.144 / 00:45.490, 764Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:45.491, 764Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.719 / 00:47.211, 764Mb) Sushi: info Loaded hl7.fhir.r4.examples#4.0.1 with 5306 resources (00:03.497 / 00:50.708, 764Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1 with 855 resources (00:00.318 / 00:51.026, 764Mb) Sushi: info Loading supplemental version of FHIR to support extensions from hl7.fhir.extensions.r5 (00:00.000 / 00:51.026, 764Mb) Sushi: info Attempting to download hl7.fhir.r5.core#5.0.0 from https://packages.fhir.org/hl7.fhir.r5.core/5.0.0 (00:00.014 / 00:51.041, 764Mb) Sushi: info Downloaded hl7.fhir.r5.core#5.0.0 (00:04.398 / 00:55.440, 764Mb) Sushi: info Cached hl7.fhir.r5.core#5.0.0 to /home/fhiruser/.fhir/packages/hl7.fhir.r5.core#5.0.0 (00:00.001 / 00:55.441, 764Mb) Sushi: info Loaded hl7.fhir.r5.core#5.0.0 with 2968 resources (00:01.439 / 00:56.880, 764Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:56.881, 764Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.265 / 01:00.147, 764Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 01:00.148, 764Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.432 / 01:01.581, 764Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 8 resources (00:00.122 / 01:01.703, 764Mb) Sushi: info Converting FSH to FHIR resources... (00:00.044 / 01:01.748, 764Mb) Sushi: info Converted 91 FHIR StructureDefinitions. (00:16.769 / 01:18.518, 764Mb) Sushi: info Converted 12 FHIR CodeSystems. (00:00.949 / 01:19.467, 764Mb) Sushi: info Converted 14 FHIR ValueSets. (00:00.691 / 01:20.159, 764Mb) Sushi: info Converted 114 FHIR instances. (02:21.426 / 03:41.586, 764Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.200 / 03:41.786, 764Mb) Sushi: info Exported 192 FHIR resources as JSON. (00:00.465 / 03:42.251, 764Mb) Sushi: info Assembling Implementation Guide sources... (00:00.008 / 03:42.260, 764Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.uv.sdc.json (00:00.194 / 03:42.454, 764Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 03:42.454, 764Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 03:42.456, 764Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 03:42.457, 764Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 03:42.457, 764Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 03:42.457, 764Mb) Sushi: | | 36 | 53 | 2 | 0 | | (00:00.000 / 03:42.457, 764Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 03:42.457, 764Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 03:42.457, 764Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 03:42.457, 764Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 03:42.458, 764Mb) Sushi: | | 14 | 12 | 114 | | (00:00.000 / 03:42.458, 764Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 03:42.458, 764Mb) Sushi: | | (00:00.000 / 03:42.458, 764Mb) Sushi: =================================================================== (00:00.000 / 03:42.458, 764Mb) Sushi: | You've turned the tide. 0 Errors 0 Warnings | (00:00.000 / 03:42.458, 764Mb) Sushi: =================================================================== (00:00.000 / 03:42.459, 764Mb) Root directory: /scratch/repo (00:00.066 / 03:42.525, 764Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.887 / 03:43.413, 72Mb) Load Template from hl7.fhir.template#current (00:00.794 / 03:44.207, 65Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:00.276 / 03:44.484, 65Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir2.base.template#current (00:00.219 / 03:44.704, 73Mb) Installing fhir2.base.template#current to the package cache  Fetching:  Installing fhir2.base.template#current  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:05.634 / 03:50.339, 385Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.014 / 03:50.354, 385Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-9585011025940930915.html Connect to Terminology Server at http://tx.fhir.org (00:39.727 / 04:30.081, 3Gb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.r4.examples#4.0.1 Load Package hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Initialization complete (00:14.749 / 04:44.830, 7Gb) Load IG (00:00.000 / 04:44.830, 7Gb) Load Translations (00:00.001 / 04:44.831, 7Gb) Load Content (00:00.000 / 04:44.832, 7Gb) Using en as the default narrative language. (Implementation Guide param i18n-default-lang) (00:00.205 / 04:45.037, 7Gb) Process Loaded Resources (00:05.389 / 04:50.426, 7Gb) Generating Snapshots (00:03.970 / 04:54.397, 999Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/uv/sdc/package-list.json for version check (00:04.401 / 04:58.798, 1Gb) Processing Conformance Resources (00:00.212 / 04:59.011, 1Gb) Checking Language (00:00.000 / 04:59.011, 1Gb) Load Dependency Info (00:00.007 / 04:59.018, 1Gb) Load Info (00:00.003 / 04:59.022, 1Gb) Load Paths (00:00.001 / 04:59.024, 1Gb) Check R4 / R4B (00:00.001 / 04:59.025, 1Gb) Assign Comparison Ids (00:00.185 / 04:59.211, 1Gb) Propagating status (00:00.000 / 04:59.211, 1Gb) Generating Narratives (00:00.172 / 04:59.384, 1Gb) Validating Conformance Resources (00:07.910 / 05:07.294, 1Gb) Check profiles & code systems (00:35.607 / 05:42.902, 3Gb) Check realm rules (00:00.217 / 05:43.120, 1Gb) Previous Version Comparison (00:00.000 / 05:43.120, 1Gb) Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Checking for Bundles to sign (01:16.662 / 06:59.783, 6Gb) Validating Resources (00:00.000 / 06:59.784, 6Gb) Processing Provenance Records (00:21.439 / 07:21.224, 6Gb) Generating Translation artifacts (00:00.000 / 07:21.224, 6Gb) Generating Outputs in /scratch/repo/output (00:00.004 / 07:21.229, 6Gb) Generate Native Outputs (00:00.411 / 07:21.640, 6Gb) Run Template (00:32.093 / 07:53.734, 2Gb) Generate HTML Outputs (00:03.289 / 07:57.023, 2Gb) Generate Spreadsheets (01:25.170 / 09:22.194, 1Gb) Generate Summaries (00:12.071 / 09:34.265, 2Gb) Generating Summary Outputs (en) (00:00.000 / 09:34.266, 2Gb) DB Cumulative Time invested: 00:00:12.984 Sending Usage Stats to Server (00:13.338 / 09:47.604, 2Gb) ## Memory (MB): Use = 2336, Free = 16671, Total = 19008, Max = 19008 (00:00.011 / 09:47.616, 2Gb) Reclaiming memory... (00:00.000 / 09:47.616, 2Gb) ## Memory (MB): Use = 1304, Free = 17703, Total = 19008, Max = 19008 (00:01.635 / 09:49.251, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 09:49.253, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 09:49.253, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 09:49.253, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 09:49.253, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.586 / 09:49.840, 1Gb) Jekyll: Generating... (00:00.000 / 09:49.840, 1Gb) Jekyll: done in 15.84 seconds. (00:15.839 / 10:05.680, 1Gb) Checking Output HTML (00:10.990 / 10:16.671, 6Gb) AI format for /scratch/repo/output/en - % reduction = 98 found 6303 files (00:09.442 / 10:26.113, 6Gb) ........................................ .........................Sending usage stats failed: Connection timed out ............... ... 6303 html files, 0 pages invalid xhtml (0%) (02:07.407 / 12:33.520, 2Gb) ... 930635 links, 163 broken links (0%) (00:00.002 / 12:33.523, 2Gb) Generate fragment-usage-analysis.csv (00:00.000 / 12:33.523, 2Gb) Build final .zip (00:00.019 / 12:33.543, 2Gb) Final .zip built (00:12.331 / 12:45.875, 2Gb) Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Built. Times: loading: 00:14.179, generate: 07:53.470, propagating status: 00:00.172, narrative generation: 00:07.908, realm-rules: 00:00.000, previous-version: 01:16.539, jekyll: 00:16.492, validation: 00:55.108 (#201), template: 00:03.301 (#3) (00:06.607 / 12:52.482, 2Gb) Generating QA (00:00.000 / 12:52.482, 2Gb) Internal error in location for message: 'Error @1, 2: Found / expecting a token name', loc = '/scratch/repo/output/en/Questionnaire-questionnaire-sdc-profile-example-PHQ9.html', err = 'The html source has duplicate anchor Ids: questionnaire-sdc-profile-example-PHQ9/VSPHQ9-http://hl7.o' Internal error in location for message: 'Error @1, 2: Found / expecting a token name', loc = '/scratch/repo/output/en/examples.html', err = 'Illegal HTML: illegal html element: textarea ( )' Validation output in /scratch/repo/output/qa.html Errors: 210, Warnings: 3, Info: 36, Broken Links: 163 (00:01.532 / 12:54.015, 3Gb) Finished @ 10/22/25, 8:21 PM. Max Memory Used = 7Gb (00:00.056 / 12:54.071, 3Gb)