INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/phd --branch master repo DEBUG:root:Time to deadline 35879.99801 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35876.521491 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35875.451937 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 5s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/phd/ -out /scratch/repo DEBUG:root:Time to deadline 35870.358892 seconds FHIR IG Publisher Version 2.0.22 (Git# 6bbdf7dc5537). Built 2025-10-22T10:27:38.176Z (21 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/phd/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Thursday, October 23, 2025, 8:12:01 AM Coordinated Universal Time (2025-10-23T08:12:01Z) Build FHIR IG from /scratch/repo (00:00.023 / 00:00.023, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.025, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.029, 97Mb) Run Sushi on /scratch/repo (00:00.004 / 00:00.033, 97Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.565 / 00:00.599, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.599, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.599, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.600, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.600, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.546 / 00:01.147, 113Mb) Sushi: info Importing FSH text... (00:00.112 / 00:01.259, 113Mb) Sushi: info Preprocessed 40 documents with 8 aliases. (00:00.281 / 00:01.541, 113Mb) Sushi: info Imported 39 definitions and 1 instances. (00:01.088 / 00:02.629, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.116 / 00:02.746, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.570 / 00:03.316, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.000 / 00:03.317, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.831 / 00:04.148, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.002 / 00:04.151, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.060 / 00:04.211, 113Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.469 / 00:04.680, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:04.681, 113Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.969 / 00:07.650, 113Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.003 / 00:07.653, 113Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.318 / 00:08.972, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.458 / 00:09.430, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:09.430, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.550 / 00:10.980, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:10.981, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.228 / 00:11.210, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:11.210, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.324 / 00:14.535, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:14.536, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.230 / 00:15.766, 113Mb) Sushi: info Found 1 non-JSON / non-XML file(s) in directory: /scratch/repo/input/vocabulary. Only resource files with JSON or XML extensions are supported. To see the skipped files in the logs, use debug logging. (00:00.016 / 00:15.783, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 30 resources (00:00.000 / 00:15.784, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.016 / 00:15.800, 113Mb) Sushi: info Converted 17 FHIR StructureDefinitions. (00:04.778 / 00:20.579, 113Mb) Sushi: info Converted 7 FHIR CodeSystems. (00:03.386 / 00:23.965, 113Mb) Sushi: info Converted 15 FHIR ValueSets. (00:00.566 / 00:24.531, 113Mb) Sushi: info Converted 1 FHIR instances. (00:00.117 / 00:24.649, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.200 / 00:24.849, 113Mb) Sushi: info Exported 40 FHIR resources as JSON. (00:00.176 / 00:25.025, 113Mb) Sushi: info Exporting FSH definitions only. No IG related content will be exported. (00:00.002 / 00:25.028, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:25.030, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:25.030, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:25.030, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:25.031, 113Mb) Sushi: | | 13 | 4 | 0 | 0 | | (00:00.000 / 00:25.031, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:25.031, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:25.031, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:25.032, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:25.032, 113Mb) Sushi: | | 15 | 7 | 1 | | (00:00.000 / 00:25.032, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:25.032, 113Mb) Sushi: | | (00:00.000 / 00:25.032, 113Mb) Sushi: =================================================================== (00:00.000 / 00:25.032, 113Mb) Sushi: | You're piranha roll now! 0 Errors 0 Warnings | (00:00.000 / 00:25.033, 113Mb) Sushi: =================================================================== (00:00.000 / 00:25.033, 113Mb) Root directory: /scratch/repo (00:00.033 / 00:25.066, 113Mb) Load Template from hl7.fhir.template#current (00:00.940 / 00:26.007, 86Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:01.076 / 00:27.083, 158Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir2.base.template#current (00:00.176 / 00:27.260, 158Mb) Installing fhir2.base.template#current to the package cache  Fetching:  Installing fhir2.base.template#current  done. Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:03.328 / 00:30.588, 146Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.004 / 00:30.593, 146Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-5820616683324116989.html Connect to Terminology Server at http://tx.fhir.org (00:31.031 / 01:01.624, 437Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.fhir.uv.pocd#0.3.0 to the package cache  Fetching:  Installing hl7.fhir.uv.pocd#0.3.0  done. Load Package hl7.fhir.uv.pocd#0.3.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:09.310 / 01:10.934, 424Mb) Load IG (00:00.000 / 01:10.934, 424Mb) Load Translations (00:00.000 / 01:10.935, 424Mb) Load Content (00:00.000 / 01:10.935, 424Mb) Using en as the default narrative language. (Implementation Guide param i18n-default-lang) (00:00.077 / 01:11.013, 432Mb) Process Loaded Resources (00:01.210 / 01:12.223, 552Mb) Generating Snapshots (00:00.340 / 01:12.564, 648Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/uv/phd/package-list.json for version check (00:01.565 / 01:14.129, 698Mb) Processing Conformance Resources (00:00.104 / 01:14.233, 698Mb) Checking Language (00:00.000 / 01:14.233, 698Mb) Load Dependency Info (00:00.001 / 01:14.235, 706Mb) Load Info (00:00.000 / 01:14.236, 706Mb) Load Paths (00:00.000 / 01:14.236, 710Mb) Check R4 / R4B (00:00.000 / 01:14.237, 710Mb) Assign Comparison Ids (00:00.060 / 01:14.298, 722Mb) Propagating status (00:00.000 / 01:14.298, 722Mb) Generating Narratives (00:00.094 / 01:14.392, 802Mb) Validating Conformance Resources (00:04.782 / 01:19.175, 700Mb) Check profiles & code systems (00:16.496 / 01:35.671, 1Gb) Check realm rules (00:00.007 / 01:35.678, 1Gb) Previous Version Comparison (00:00.000 / 01:35.678, 1Gb) Installing hl7.fhir.uv.phd#2.0.0-ballot2 to the package cache  Fetching:  Installing hl7.fhir.uv.phd#2.0.0-ballot2  done. Installing hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1  done. Checking for Bundles to sign (00:10.816 / 01:46.495, 1Gb) Validating Resources (00:00.000 / 01:46.495, 1Gb) Processing Provenance Records (00:39.989 / 02:26.485, 1Gb) Generating Translation artifacts (00:00.000 / 02:26.485, 1Gb) Generating Outputs in /scratch/repo/output (00:00.001 / 02:26.487, 1Gb) Generate Native Outputs (00:00.225 / 02:26.712, 1Gb) Run Template (00:11.516 / 02:38.229, 1Gb) Generate HTML Outputs (00:03.764 / 02:41.993, 1Gb) Generate Spreadsheets (01:04.549 / 03:46.543, 4Gb) Generate Summaries (00:06.196 / 03:52.740, 2Gb) Generating Summary Outputs (en) (00:00.000 / 03:52.740, 2Gb) DB Cumulative Time invested: 00:00:36.859 Sending Usage Stats to Server (00:06.334 / 03:59.075, 4Gb) ## Memory (MB): Use = 4156, Free = 14851, Total = 19008, Max = 19008 (00:00.010 / 03:59.086, 4Gb) Reclaiming memory... (00:00.000 / 03:59.086, 4Gb) ## Memory (MB): Use = 994, Free = 18013, Total = 19008, Max = 19008 (00:00.879 / 03:59.966, 1002Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.004 / 03:59.970, 1002Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 03:59.970, 1002Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 03:59.970, 1002Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 03:59.970, 1002Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.440 / 04:00.411, 1018Mb) Jekyll: Generating... (00:00.000 / 04:00.411, 1018Mb) Jekyll: done in 4.433 seconds. (00:04.432 / 04:04.844, 1Gb) Checking Output HTML (00:04.627 / 04:09.471, 4Gb) AI format for /scratch/repo/output/en - % reduction = 100 found 2789 files (00:01.898 / 04:11.370, 7Gb) ........................................ ........................................ ... 2789 html files, 0 pages invalid xhtml (0%) (00:35.800 / 04:47.170, 4Gb) ... 524460 links, 0 broken links (0%) (00:00.000 / 04:47.170, 4Gb) Generate fragment-usage-analysis.csv (00:00.000 / 04:47.171, 4Gb) Build final .zip (00:00.008 / 04:47.179, 4Gb) Final .zip built (00:04.924 / 04:52.104, 4Gb) Built. Times: loading: 00:03.298, generate: 03:39.998, propagating status: 00:00.094, narrative generation: 00:04.782, realm-rules: 00:00.000, previous-version: 00:10.759, jekyll: 00:04.917, validation: 00:56.399 (#71), template: 00:03.772 (#3) (00:02.128 / 04:54.233, 4Gb) Generating QA (00:00.000 / 04:54.233, 4Gb) Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 1, Info: 0, Broken Links: 0 (00:00.254 / 04:54.487, 4Gb) Finished @ 10/23/25, 8:16 AM. Max Memory Used = 7Gb (00:00.023 / 04:54.511, 4Gb)