INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/pacio-adi --branch master repo DEBUG:root:Time to deadline 35879.996583 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35877.922981 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35876.852829 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 140 packages in 7s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.2 npm notice Changelog: npm notice Run `npm install -g npm@11.5.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/pacio-adi/ -out /scratch/repo DEBUG:root:Time to deadline 35869.955344 seconds FHIR IG Publisher Version 2.0.12 (Git# 1e7f5af908a3). Built 2025-07-27T20:11:20.240Z (7 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/pacio-adi/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Monday, August 4, 2025, 8:07:18 PM Coordinated Universal Time (2025-08-04T20:07:18Z) Build FHIR IG from /scratch/repo (00:00.027 / 00:00.027, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.030, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.033, 97Mb) Found dependency on hl7.fhir.us.core#8.0.0 in Sushi config. Pre-installing (00:00.004 / 00:00.038, 97Mb) Installing hl7.fhir.us.core#8.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#8.0.0  done. Found dependency on us.nlm.vsac#0.22.0 in Sushi config. Pre-installing (00:04.144 / 00:04.182, 90Mb) Installing us.nlm.vsac#0.22.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.22.0  done. Run Sushi on /scratch/repo (00:05.503 / 00:09.685, 378Mb) Sushi: info Running SUSHI v3.16.3 (implements FHIR Shorthand specification v3.0.0) (00:00.741 / 00:10.427, 378Mb) Sushi: info Arguments: (00:00.000 / 00:10.427, 378Mb) Sushi: info --require-latest (00:00.000 / 00:10.427, 378Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:10.428, 378Mb) Sushi: info /scratch/repo (00:00.000 / 00:10.428, 378Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.766 / 00:11.195, 378Mb) Sushi: info Importing FSH text... (00:00.175 / 00:11.370, 378Mb) Sushi: info Preprocessed 40 documents with 70 aliases. (00:00.689 / 00:12.060, 378Mb) Sushi: info Imported 72 definitions and 100 instances. (00:00.072 / 00:12.132, 378Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.157 / 00:12.290, 378Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.7.1 (00:00.613 / 00:12.904, 378Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.7.1 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.7.1 (00:00.001 / 00:12.905, 378Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.7.1 (00:00.814 / 00:13.720, 378Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.7.1 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.7.1 (00:00.003 / 00:13.723, 378Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.7.1 with 105 resources (00:00.080 / 00:13.803, 378Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.464 / 00:14.268, 378Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:14.269, 378Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:02.815 / 00:17.085, 378Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.001 / 00:17.086, 378Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.978 / 00:19.065, 378Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.470 / 00:19.535, 378Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:19.535, 378Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.660 / 00:21.196, 378Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.004 / 00:21.200, 378Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.389 / 00:21.590, 378Mb) Sushi: info Loaded hl7.fhir.us.core#8.0.0 with 205 resources (00:00.192 / 00:21.782, 378Mb) Sushi: info Loaded us.nlm.vsac#0.22.0 with 7835 resources (00:06.306 / 00:28.089, 378Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.001 / 00:28.090, 378Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.474 / 00:31.564, 378Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.002 / 00:31.566, 378Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.605 / 00:33.172, 378Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 1 resources (00:00.021 / 00:33.194, 378Mb) Sushi: info Converting FSH to FHIR resources... (00:00.048 / 00:33.243, 378Mb) Sushi: info Converted 50 FHIR StructureDefinitions. (00:05.522 / 00:38.765, 378Mb) Sushi: info Converted 4 FHIR CodeSystems. (00:00.104 / 00:38.869, 378Mb) Sushi: info Converted 18 FHIR ValueSets. (00:00.451 / 00:39.321, 378Mb) Sushi: info Converted 100 FHIR instances. (00:08.909 / 00:48.231, 378Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 00:48.232, 378Mb) Sushi: info Exported 172 FHIR resources as JSON. (00:00.381 / 00:48.614, 378Mb) Sushi: info Assembling Implementation Guide sources... (00:00.006 / 00:48.621, 378Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.us.pacio-adi.json (00:00.062 / 00:48.683, 378Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:48.683, 378Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:48.685, 378Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:48.686, 378Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:48.686, 378Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:48.687, 378Mb) Sushi: | | 36 | 14 | 0 | 0 | | (00:00.000 / 00:48.687, 378Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:48.687, 378Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:48.687, 378Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:48.687, 378Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:48.688, 378Mb) Sushi: | | 18 | 4 | 100 | | (00:00.000 / 00:48.688, 378Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:48.688, 378Mb) Sushi: | | (00:00.000 / 00:48.688, 378Mb) Sushi: =================================================================== (00:00.000 / 00:48.688, 378Mb) Sushi: | You're catching on now! 0 Errors 0 Warnings | (00:00.000 / 00:48.689, 378Mb) Sushi: =================================================================== (00:00.000 / 00:48.689, 378Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.879 / 00:49.569, 56Mb) Load Template from #custom-template (00:00.722 / 00:50.291, 57Mb) Load Template from hl7.fhir.template#current (00:00.003 / 00:50.294, 57Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:00.536 / 00:50.830, 97Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir.base.template#current (00:00.189 / 00:51.019, 97Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:04.294 / 00:55.314, 393Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:55.317, 393Mb) Core Package hl7.fhir.r4.core#4.0.1 Running Terminology Log: /tmp/ohfu-fhir-ig-13851809640876089185.html Connect to Terminology Server at http://tx.fhir.org (00:34.652 / 01:29.970, 939Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Installing hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1  done. Load Package hl7.fhir.uv.extensions.r4#5.3.0-ballot-tc1 Installing hl7.terminology.r4#6.4.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.4.0  done. Load Package hl7.fhir.uv.extensions.r4#5.2.0 Load Package hl7.terminology.r4#6.4.0 Installing hl7.fhir.uv.smart-app-launch#2.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.2.0  done. Installing hl7.fhir.uv.extensions.r4#5.1.0-snapshot1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Installing hl7.terminology#5.5.0 to the package cache  Fetching:  Installing hl7.terminology#5.5.0  done. Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Load Package hl7.terminology#5.5.0 Load Package hl7.fhir.uv.smart-app-launch#2.2.0 Installing us.nlm.vsac#0.23.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.23.0  done. Load Package us.nlm.vsac#0.23.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:42.437 / 02:12.407, 524Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Installing us.cdc.phinvads#0.12.0 to the package cache  Fetching:  Installing us.cdc.phinvads#0.12.0  done. Load Package us.cdc.phinvads#0.12.0 Load Package hl7.fhir.us.core#8.0.0 Load Package us.nlm.vsac#0.22.0 Load Package hl7.fhir.uv.tools.r4#0.7.1 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:18.062 / 02:30.470, 1Gb) Load IG (00:00.000 / 02:30.470, 1Gb) Load Content (00:00.000 / 02:30.471, 1Gb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.195 / 02:30.666, 1Gb) Process Loaded Resources (00:06.088 / 02:36.754, 664Mb) Generating Snapshots (00:03.077 / 02:39.832, 1Gb) loadPrePages from FetchedFile[/scratch/repo/input/includes] as /scratch/repo/input/includes loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/pacio-adi/package-list.json for version check (00:05.099 / 02:44.932, 1001Mb) Processing Conformance Resources (00:00.176 / 02:45.108, 1017Mb) Checking Language (00:00.000 / 02:45.108, 1017Mb) Load Dependency Info (00:00.004 / 02:45.113, 1017Mb) Load Info (00:00.002 / 02:45.115, 1017Mb) Load Paths (00:00.001 / 02:45.116, 1021Mb) Check R4 / R4B (00:00.000 / 02:45.117, 1021Mb) Assign Comparison Ids (00:00.061 / 02:45.178, 1Gb) Propagating status (00:00.000 / 02:45.179, 1Gb) Generating Narratives (00:00.145 / 02:45.324, 1Gb) Validating Conformance Resources (00:06.874 / 02:52.199, 1Gb) Check profiles & code systems (00:58.202 / 03:50.401, 1Gb) Check realm rules (00:00.007 / 03:50.409, 1Gb) US Core Comparisons Finished Previous Version Comparison (10:21.757 / 14:12.166, 1Gb) Installing hl7.fhir.us.pacio-adi#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.pacio-adi#1.0.0  done. Installing hl7.fhir.us.core#4.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#4.0.0  done. Installing hl7.fhir.uv.bulkdata#1.0.1 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#1.0.1  done. Installing us.nlm.vsac#0.3.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.3.0  done. Installing hl7.fhir.uv.extensions#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions#1.0.0  done. FHIR Version mismatch in package hl7.fhir.uv.extensions#1.0.0: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.us.pacio-adi#1.0.0) Installing hl7.terminology.r5#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r5#5.0.0  done. FHIR Version mismatch in package hl7.terminology.r5#5.0.0: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.us.pacio-adi#1.0.0 -> hl7.fhir.uv.extensions#1.0.0) Installing hl7.terminology#5.4.0 to the package cache  Fetching:  Installing hl7.terminology#5.4.0  done. Installing us.nlm.vsac#0.15.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.15.0  done. Checking for Bundles to sign (02:00.499 / 16:12.665, 7Gb) Validating Resources (00:00.000 / 16:12.665, 7Gb) Processing Provenance Records (00:17.706 / 16:30.372, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 16:30.373, 2Gb) Generate Native Outputs (00:00.293 / 16:30.667, 2Gb) Run Template (00:23.828 / 16:54.495, 5Gb) Generate HTML Outputs (00:02.664 / 16:57.159, 5Gb) Generate Spreadsheets (00:44.681 / 17:41.841, 9Gb) Generate Summaries (00:09.929 / 17:51.771, 2Gb) Generating Summary Outputs (00:00.000 / 17:51.771, 2Gb) DB Cumulative Time invested: 00:00:04.170 Sending Usage Stats to Server (00:24.198 / 18:15.969, 1Gb) ## Memory (MB): Use = 1992, Free = 17016, Total = 19008, Max = 19008 (00:00.010 / 18:15.980, 1Gb) Reclaiming memory... (00:00.000 / 18:15.980, 1Gb) ## Memory (MB): Use = 1698, Free = 17309, Total = 19008, Max = 19008 (00:01.901 / 18:17.881, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 18:17.883, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 18:17.883, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 18:17.883, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 18:17.883, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.513 / 18:18.397, 1Gb) Jekyll: Generating... (00:00.000 / 18:18.397, 1Gb) Jekyll: done in 7.855 seconds. (00:07.854 / 18:26.251, 1Gb) Checking Output HTML (00:08.009 / 18:34.260, 4Gb) found 2504 files (00:00.013 / 18:34.274, 4Gb) ........................................ ........................................ ... 2504 html files, 0 pages invalid xhtml (0%) (00:57.927 / 19:32.202, 2Gb) ... 576702 links, 0 broken links (0%) (00:00.000 / 19:32.202, 2Gb) Generate fragment-usage-analysis.csv (00:00.000 / 19:32.202, 2Gb) Build final .zip (00:00.009 / 19:32.211, 2Gb) Final .zip built (00:16.616 / 19:48.829, 2Gb) Installing hl7.fhir.uv.extensions#5.1.0-snapshot1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions#5.1.0-snapshot1  done. Installing hl7.terminology.r5#5.3.0 to the package cache  Fetching:  Installing hl7.terminology.r5#5.3.0  done. Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Built. Times: loading: 00:14.637, generate: 17:43.307, propagating status: 00:00.145, narrative generation: 00:06.873, realm-rules: 10:21.757, previous-version: 02:00.420, jekyll: 00:08.408, validation: 01:15.555 (#174), template: 00:02.674 (#3) (00:39.588 / 20:28.417, 4Gb) Generating QA (00:00.000 / 20:28.417, 4Gb) Validation output in /scratch/repo/output/qa.html Errors: 0, Warnings: 0, Info: 0, Broken Links: 0 (00:00.505 / 20:28.923, 4Gb) Finished @ 8/4/25, 8:27 PM. Max Memory Used = 9Gb (00:00.063 / 20:28.986, 4Gb)