Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

## : GenRiskDiabetesT2 - JSON Representation

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    {
      "resourceType" : "RiskAssessment",
      "id" : "GenRiskDiabetesT2",
      "text" : {
        "status" : "generated",
        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: RiskAssessment GenRiskDiabetesT2</b></p><a name=\"GenRiskDiabetesT2\"> </a><a name=\"hcGenRiskDiabetesT2\"> </a><p><b>parent</b>: <a href=\"Observation-PolyGenicDiagnosticImpExample.html\">Observation Diagnostic Implication</a></p><p><b>status</b>: Final</p><p><b>subject</b>: <a href=\"Patient-CGPatientExample01.html\">Adam B. Everyman  Male, DoB: 1951-01-20 ( Medical Record Number: m123\u00a0(use:\u00a0usual,\u00a0))</a></p><p><b>basis</b>: </p><ul><li>Variant 1 (Identifier: <code>http://hospital.example.org</code>/11)</li><li>Variant 2 (Identifier: <code>http://hospital.example.org</code>/12)</li><li>Variant 3 (Identifier: <code>http://hospital.example.org</code>/13)</li><li>Variant 4 (Identifier: <code>http://hospital.example.org</code>/14)</li><li>Variant 5 (Identifier: <code>http://hospital.example.org</code>/15)</li><li>Variant 6 (Identifier: <code>http://hospital.example.org</code>/16)</li><li>Variant 7 (Identifier: <code>http://hospital.example.org</code>/17)</li></ul><blockquote><p><b>prediction</b></p><p><b>outcome</b>: <span title=\"Codes:{http://snomed.info/sct 44054006}\">Diabetes mellitus type 2 (disorder)</span></p><p><b>probability</b>: 0.26</p><p><b>qualitativeRisk</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/risk-probability low}\">Low likelihood</span></p><p><b>relativeRisk</b>: 1.05</p><p><b>when</b>: ?-53</p></blockquote><blockquote><p><b>prediction</b></p><p><b>outcome</b>: <span title=\"Codes:{http://snomed.info/sct 44054006}\">Diabetes mellitus type 2 (disorder)</span></p><p><b>probability</b>: 0.7</p><p><b>qualitativeRisk</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/risk-probability high}\">High likelihood</span></p><p><b>relativeRisk</b>: 2.69</p><p><b>when</b>: ?-65</p></blockquote></div>"
      },
      "parent" : {
        🔗 "reference" : "Observation/PolyGenicDiagnosticImpExample"
      },
      "status" : "final",
      "subject" : {
        🔗 "reference" : "Patient/CGPatientExample01"
      },
      "basis" : [
        {
          "identifier" : {
            "system" : "http://hospital.example.org",
            "value" : "11"
          },
          "display" : "Variant 1"
        },
        {
          "identifier" : {
            "system" : "http://hospital.example.org",
            "value" : "12"
          },
          "display" : "Variant 2"
        },
        {
          "identifier" : {
            "system" : "http://hospital.example.org",
            "value" : "13"
          },
          "display" : "Variant 3"
        },
        {
          "identifier" : {
            "system" : "http://hospital.example.org",
            "value" : "14"
          },
          "display" : "Variant 4"
        },
        {
          "identifier" : {
            "system" : "http://hospital.example.org",
            "value" : "15"
          },
          "display" : "Variant 5"
        },
        {
          "identifier" : {
            "system" : "http://hospital.example.org",
            "value" : "16"
          },
          "display" : "Variant 6"
        },
        {
          "identifier" : {
            "system" : "http://hospital.example.org",
            "value" : "17"
          },
          "display" : "Variant 7"
        }
      ],
      "prediction" : [
        {
          "outcome" : {
            "coding" : [
              {
                "system" : "http://snomed.info/sct",
                "code" : "44054006",
                "display" : "Diabetes mellitus type 2 (disorder)"
              }
            ]
          },
          "probabilityDecimal" : 0.26,
          "qualitativeRisk" : {
            "coding" : [
              {
                "system" : "http://terminology.hl7.org/CodeSystem/risk-probability",
                "code" : "low",
                "display" : "Low likelihood"
              }
            ]
          },
          "relativeRisk" : 1.05,
          "whenRange" : {
            "high" : {
              "value" : 53,
              "unit" : "years",
              "system" : "http://unitsofmeasure.org",
              "code" : "a"
            }
          }
        },
        {
          "outcome" : {
            "coding" : [
              {
                "system" : "http://snomed.info/sct",
                "code" : "44054006",
                "display" : "Diabetes mellitus type 2 (disorder)"
              }
            ]
          },
          "probabilityDecimal" : 0.7,
          "qualitativeRisk" : {
            "coding" : [
              {
                "system" : "http://terminology.hl7.org/CodeSystem/risk-probability",
                "code" : "high",
                "display" : "High likelihood"
              }
            ]
          },
          "relativeRisk" : 2.69,
          "whenRange" : {
            "high" : {
              "value" : 65,
              "unit" : "years",
              "system" : "http://unitsofmeasure.org",
              "code" : "a"
            }
          }
        }
      ]
    }