Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

## : PGXGenomicStudyAnalysis - XML Representation

Page standards status: Informative

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    <Procedure xmlns="http://hl7.org/fhir">
      <id value="PGXGenomicStudyAnalysis"/>
      <meta>
        <profile
                 value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis"/>
      </meta>
      <text>
        <status value="extensions"/>
        <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Procedure PGXGenomicStudyAnalysis</b></p><a name="PGXGenomicStudyAnalysis"> </a><a name="hcPGXGenomicStudyAnalysis"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-genomic-study-analysis.html">Genomic Study Analysis</a></p></div><p><b>Genomic Study Analysis Genome Build</b>: <span title="Codes:{http://loinc.org LA26806-2}">GRCh38</span></p><blockquote><p><b>Genomic Study Analysis Metrics</b></p><ul><li>sequencing-coverage: 100</li></ul></blockquote><blockquote><p><b>Genomic Study Analysis Regions</b></p><ul><li>description: protein-coding and exon-splicing regions</li><li>studied: <span title="Codes:{http://www.genenames.org HGNC:2621}">CYP2C19</span></li><li>studied: <span title="Codes:{http://www.genenames.org HGNC:2623}">CYP2C9</span></li><li>studied: <span title="Codes:{http://www.genenames.org HGNC:23663}">VKORC1</span></li></ul></blockquote><p><b>status</b>: Completed</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span></p><p><b>subject</b>: <a href="Patient-CGPatientExample01.html">Adam B. Everyman  Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))</a></p><p><b>performed</b>: 2021-01-01 01:01:10-0600</p></div>
      </text>
      <extension
                 url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-genome-build">
        <valueCodeableConcept>
          <coding>
            <system value="http://loinc.org"/>
            <code value="LA26806-2"/>
            <display value="GRCh38"/>
          </coding>
        </valueCodeableConcept>
      </extension>
      <extension
                 url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-metrics">
        <extension url="sequencing-coverage">
          <valueQuantity>
            <value value="100"/>
          </valueQuantity>
        </extension>
      </extension>
      <extension
                 url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-regions">
        <extension url="description">
          <valueString value="protein-coding and exon-splicing regions"/>
        </extension>
        <extension url="studied">
          <valueCodeableConcept>
            <coding>
              <system value="http://www.genenames.org"/>
              <code value="HGNC:2621"/>
              <display value="CYP2C19"/>
            </coding>
          </valueCodeableConcept>
        </extension>
        <extension url="studied">
          <valueCodeableConcept>
            <coding>
              <system value="http://www.genenames.org"/>
              <code value="HGNC:2623"/>
              <display value="CYP2C9"/>
            </coding>
          </valueCodeableConcept>
        </extension>
        <extension url="studied">
          <valueCodeableConcept>
            <coding>
              <system value="http://www.genenames.org"/>
              <code value="HGNC:23663"/>
              <display value="VKORC1"/>
            </coding>
          </valueCodeableConcept>
        </extension>
      </extension>
      <status value="completed"/>
      <category>
        <coding>
          <system
                  value="http://terminology.hl7.org/CodeSystem/observation-category"/>
          <code value="laboratory"/>
        </coding>
      </category>
      <subject>🔗
        <reference value="Patient/CGPatientExample01"/>
      </subject>
      <performedDateTime value="2021-01-01T01:01:10-06:00"/>
    </Procedure>