Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

## : GenRiskDiabetesT2 - TTL Representation

Page standards status: Informative

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    @prefix fhir: <http://hl7.org/fhir/> .
    @prefix owl: <http://www.w3.org/2002/07/owl#> .
    @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
    @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
    @prefix sct: <http://snomed.info/id/> .
    @prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

    # - resource -------------------------------------------------------------------

     a fhir:RiskAssessment ;
      fhir:nodeRole fhir:treeRoot ;
      fhir:id [ fhir:v "GenRiskDiabetesT2"] ; #
      fhir:text [
    fhir:status [ fhir:v "generated" ] ;
    fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: RiskAssessment GenRiskDiabetesT2</b></p><a name=\"GenRiskDiabetesT2\"> </a><a name=\"hcGenRiskDiabetesT2\"> </a><p><b>parent</b>: <a href=\"Observation-PolyGenicDiagnosticImpExample.html\">Observation Diagnostic Implication</a></p><p><b>status</b>: Final</p><p><b>subject</b>: <a href=\"Patient-CGPatientExample01.html\">Adam B. Everyman  Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))</a></p><p><b>basis</b>: </p><ul><li>Variant 1 (Identifier: <code>http://hospital.example.org</code>/11)</li><li>Variant 2 (Identifier: <code>http://hospital.example.org</code>/12)</li><li>Variant 3 (Identifier: <code>http://hospital.example.org</code>/13)</li><li>Variant 4 (Identifier: <code>http://hospital.example.org</code>/14)</li><li>Variant 5 (Identifier: <code>http://hospital.example.org</code>/15)</li><li>Variant 6 (Identifier: <code>http://hospital.example.org</code>/16)</li><li>Variant 7 (Identifier: <code>http://hospital.example.org</code>/17)</li></ul><blockquote><p><b>prediction</b></p><p><b>outcome</b>: <span title=\"Codes:{http://snomed.info/sct 44054006}\">Diabetes mellitus type 2 (disorder)</span></p><p><b>probability</b>: 0.26</p><p><b>qualitativeRisk</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/risk-probability low}\">Low likelihood</span></p><p><b>relativeRisk</b>: 1.05</p><p><b>when</b>: ?-53</p></blockquote><blockquote><p><b>prediction</b></p><p><b>outcome</b>: <span title=\"Codes:{http://snomed.info/sct 44054006}\">Diabetes mellitus type 2 (disorder)</span></p><p><b>probability</b>: 0.7</p><p><b>qualitativeRisk</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/risk-probability high}\">High likelihood</span></p><p><b>relativeRisk</b>: 2.69</p><p><b>when</b>: ?-65</p></blockquote></div>"^^rdf:XMLLiteral ]
      ] ; #
      fhir:parent [
    fhir:l fhir:Observation/PolyGenicDiagnosticImpExample ;
    fhir:reference [ fhir:v "Observation/PolyGenicDiagnosticImpExample" ]
      ] ; #
      fhir:status [ fhir:v "final"] ; #
      fhir:subject [
    fhir:l fhir:Patient/CGPatientExample01 ;
    fhir:reference [ fhir:v "Patient/CGPatientExample01" ]
      ] ; #
      fhir:basis ( [
    fhir:identifier [
    fhir:system [
    fhir:v "http://hospital.example.org"^^xsd:anyURI ;
    fhir:l <http://hospital.example.org>       ] ;
    fhir:value [ fhir:v "11" ]     ] ;
    fhir:display [ fhir:v "Variant 1" ]
      ] [
    fhir:identifier [
    fhir:system [
    fhir:v "http://hospital.example.org"^^xsd:anyURI ;
    fhir:l <http://hospital.example.org>       ] ;
    fhir:value [ fhir:v "12" ]     ] ;
    fhir:display [ fhir:v "Variant 2" ]
      ] [
    fhir:identifier [
    fhir:system [
    fhir:v "http://hospital.example.org"^^xsd:anyURI ;
    fhir:l <http://hospital.example.org>       ] ;
    fhir:value [ fhir:v "13" ]     ] ;
    fhir:display [ fhir:v "Variant 3" ]
      ] [
    fhir:identifier [
    fhir:system [
    fhir:v "http://hospital.example.org"^^xsd:anyURI ;
    fhir:l <http://hospital.example.org>       ] ;
    fhir:value [ fhir:v "14" ]     ] ;
    fhir:display [ fhir:v "Variant 4" ]
      ] [
    fhir:identifier [
    fhir:system [
    fhir:v "http://hospital.example.org"^^xsd:anyURI ;
    fhir:l <http://hospital.example.org>       ] ;
    fhir:value [ fhir:v "15" ]     ] ;
    fhir:display [ fhir:v "Variant 5" ]
      ] [
    fhir:identifier [
    fhir:system [
    fhir:v "http://hospital.example.org"^^xsd:anyURI ;
    fhir:l <http://hospital.example.org>       ] ;
    fhir:value [ fhir:v "16" ]     ] ;
    fhir:display [ fhir:v "Variant 6" ]
      ] [
    fhir:identifier [
    fhir:system [
    fhir:v "http://hospital.example.org"^^xsd:anyURI ;
    fhir:l <http://hospital.example.org>       ] ;
    fhir:value [ fhir:v "17" ]     ] ;
    fhir:display [ fhir:v "Variant 7" ]
      ] ) ; #
      fhir:prediction ( [
    fhir:outcome [
          ( fhir:coding [
    a sct:44054006 ;
    fhir:system [
    fhir:v "http://snomed.info/sct"^^xsd:anyURI ;
    fhir:l <http://snomed.info/sct>         ] ;
    fhir:code [ fhir:v "44054006" ] ;
    fhir:display [ fhir:v "Diabetes mellitus type 2 (disorder)" ]       ] )     ] ;
    fhir:probability [
    a fhir:Decimal ;
    fhir:v 0.26     ] ;
    fhir:qualitativeRisk [
          ( fhir:coding [
    fhir:system [
    fhir:v "http://terminology.hl7.org/CodeSystem/risk-probability"^^xsd:anyURI ;
    fhir:l <http://terminology.hl7.org/CodeSystem/risk-probability>         ] ;
    fhir:code [ fhir:v "low" ] ;
    fhir:display [ fhir:v "Low likelihood" ]       ] )     ] ;
    fhir:relativeRisk [ fhir:v 1.05 ] ;
    fhir:when [
    a fhir:Range ;
    fhir:high [
    fhir:value [ fhir:v "53"^^xsd:decimal ] ;
    fhir:unit [ fhir:v "years" ] ;
    fhir:system [
    fhir:v "http://unitsofmeasure.org"^^xsd:anyURI ;
    fhir:l <http://unitsofmeasure.org>         ] ;
    fhir:code [ fhir:v "a" ]       ]     ]
      ] [
    fhir:outcome [
          ( fhir:coding [
    a sct:44054006 ;
    fhir:system [
    fhir:v "http://snomed.info/sct"^^xsd:anyURI ;
    fhir:l <http://snomed.info/sct>         ] ;
    fhir:code [ fhir:v "44054006" ] ;
    fhir:display [ fhir:v "Diabetes mellitus type 2 (disorder)" ]       ] )     ] ;
    fhir:probability [
    a fhir:Decimal ;
    fhir:v 0.7     ] ;
    fhir:qualitativeRisk [
          ( fhir:coding [
    fhir:system [
    fhir:v "http://terminology.hl7.org/CodeSystem/risk-probability"^^xsd:anyURI ;
    fhir:l <http://terminology.hl7.org/CodeSystem/risk-probability>         ] ;
    fhir:code [ fhir:v "high" ] ;
    fhir:display [ fhir:v "High likelihood" ]       ] )     ] ;
    fhir:relativeRisk [ fhir:v 2.69 ] ;
    fhir:when [
    a fhir:Range ;
    fhir:high [
    fhir:value [ fhir:v "65"^^xsd:decimal ] ;
    fhir:unit [ fhir:v "years" ] ;
    fhir:system [
    fhir:v "http://unitsofmeasure.org"^^xsd:anyURI ;
    fhir:l <http://unitsofmeasure.org>         ] ;
    fhir:code [ fhir:v "a" ]       ]     ]
      ] ) . #