# Genomic Study Data Format CodeSystem - Genomics Reporting Implementation Guide v4.0.0-cibuild

* [**Table of Contents**](toc.md)
* [**Artifact List**](artifacts.md)
* **Genomic Study Data Format CodeSystem**

## CodeSystem: Genomic Study Data Format CodeSystem (Experimental) 

| | |
| :--- | :--- |
| *Official URL*:http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | *Version*:4.0.0-cibuild |
| *Standards status:*[Informative](http://hl7.org/fhir/R4/versions.html#std-process) | *Computable Name*:GenomicStudyDataFormatCS |

 
Backport of http://hl7.org/fhir/genomicstudy-dataformat 

 This Code system is referenced in the content logical definition of the following value sets: 

* [GenomicStudyDataFormatVS](ValueSet-genomic-study-data-format-vs.md)



## Resource Content

```json
{
  "resourceType" : "CodeSystem",
  "id" : "genomic-study-data-format-cs",
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode" : "cg"
    },
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
      "valueCode" : "informative",
      "_valueCode" : {
        "extension" : [
          {
            "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueCanonical" : "http://hl7.org/fhir/uv/genomics-reporting/ImplementationGuide/genomics-reporting"
          }
        ]
      }
    }
  ],
  "url" : "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs",
  "version" : "4.0.0-cibuild",
  "name" : "GenomicStudyDataFormatCS",
  "title" : "Genomic Study Data Format CodeSystem",
  "status" : "active",
  "experimental" : true,
  "date" : "2025-11-08T00:09:50+00:00",
  "publisher" : "HL7 International / Clinical Genomics",
  "contact" : [
    {
      "name" : "HL7 International / Clinical Genomics",
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://www.hl7.org/Special/committees/clingenomics"
        },
        {
          "system" : "email",
          "value" : "cg@lists.HL7.org"
        }
      ]
    }
  ],
  "description" : "Backport of http://hl7.org/fhir/genomicstudy-dataformat",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code" : "001",
          "display" : "World"
        }
      ]
    }
  ],
  "caseSensitive" : true,
  "content" : "complete",
  "count" : 40,
  "concept" : [
    {
      "code" : "bam",
      "display" : "BAM",
      "definition" : "BAM"
    },
    {
      "code" : "bed",
      "display" : "BED",
      "definition" : "BED"
    },
    {
      "code" : "bedpe",
      "display" : "BEDPE",
      "definition" : "BEDPE"
    },
    {
      "code" : "bedgraph",
      "display" : "BedGraph",
      "definition" : "BedGraph"
    },
    {
      "code" : "bigbed",
      "display" : "bigBed",
      "definition" : "bigBed"
    },
    {
      "code" : "bigWig",
      "display" : "bigWig",
      "definition" : "bigWig"
    },
    {
      "code" : "birdsuite-files",
      "display" : "Birdsuite-Files",
      "definition" : "Birdsuite-Files"
    },
    {
      "code" : "broadpeak",
      "display" : "broadPeak",
      "definition" : "broadPeak"
    },
    {
      "code" : "cbs",
      "display" : "CBS",
      "definition" : "CBS"
    },
    {
      "code" : "chemical-reactivity-probing-profiles",
      "display" : "Chemical-Reactivity-Probing-Profiles",
      "definition" : "Chemical-Reactivity-Probing-Profiles"
    },
    {
      "code" : "chrom-sizes",
      "display" : "chrom-sizes",
      "definition" : "chrom-sizes"
    },
    {
      "code" : "cn",
      "display" : "CN",
      "definition" : "CN"
    },
    {
      "code" : "custom-file-formats",
      "display" : "Custom-File-Formats",
      "definition" : "Custom-File-Formats"
    },
    {
      "code" : "cytoband",
      "display" : "Cytoband",
      "definition" : "Cytoband"
    },
    {
      "code" : "fasta",
      "display" : "FASTA",
      "definition" : "FASTA"
    },
    {
      "code" : "gct",
      "display" : "GCT",
      "definition" : "GCT"
    },
    {
      "code" : "cram",
      "display" : "CRAM",
      "definition" : "CRAM"
    },
    {
      "code" : "genepred",
      "display" : "genePred",
      "definition" : "genePred"
    },
    {
      "code" : "gff-gtf",
      "display" : "GFF/GTF",
      "definition" : "GFF/GTF"
    },
    {
      "code" : "gistic",
      "display" : "GISTIC",
      "definition" : "GISTIC"
    },
    {
      "code" : "goby",
      "display" : "Goby",
      "definition" : "Goby"
    },
    {
      "code" : "gwas",
      "display" : "GWAS",
      "definition" : "GWAS"
    },
    {
      "code" : "igv",
      "display" : "IGV",
      "definition" : "IGV"
    },
    {
      "code" : "loh",
      "display" : "LOH",
      "definition" : "LOH"
    },
    {
      "code" : "maf-multiple-alignment-format",
      "display" : "MAF-Multiple Alignment Format",
      "definition" : "MAF-Multiple Alignment Format"
    },
    {
      "code" : "maf-mutation-annotation-format",
      "display" : "MAF-Mutation-Annotation-Format",
      "definition" : "MAF-Mutation-Annotation-Format"
    },
    {
      "code" : "merged-bam-file",
      "display" : "Merged BAM File",
      "definition" : "Merged BAM File"
    },
    {
      "code" : "mut",
      "display" : "MUT",
      "definition" : "MUT"
    },
    {
      "code" : "narrowpeak",
      "display" : "narrowPeak",
      "definition" : "narrowPeak"
    },
    {
      "code" : "psl",
      "display" : "PSL",
      "definition" : "PSL"
    },
    {
      "code" : "res",
      "display" : "RES",
      "definition" : "RES"
    },
    {
      "code" : "rna-secondary-structure-formats",
      "display" : "RNA-Secondary-Structure-Formats",
      "definition" : "RNA-Secondary-Structure-Formats"
    },
    {
      "code" : "sam",
      "display" : "SAM",
      "definition" : "SAM"
    },
    {
      "code" : "sample-info-attributes-file",
      "display" : "Sample-Info-Attributes-file",
      "definition" : "Sample-Info-Attributes-file"
    },
    {
      "code" : "seg",
      "display" : "SEG",
      "definition" : "SEG"
    },
    {
      "code" : "tdf",
      "display" : "TDF",
      "definition" : "TDF"
    },
    {
      "code" : "track-line",
      "display" : "Track Line",
      "definition" : "Track Line"
    },
    {
      "code" : "type-line",
      "display" : "Type Line",
      "definition" : "Type Line"
    },
    {
      "code" : "vcf",
      "display" : "VCF",
      "definition" : "VCF"
    },
    {
      "code" : "wig",
      "display" : "WIG",
      "definition" : "WIG"
    }
  ]
}

```
