Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

## : GenRiskDiabetesT2 - XML Representation

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    <RiskAssessment xmlns="http://hl7.org/fhir">
      <id value="GenRiskDiabetesT2"/>
      <text>
        <status value="generated"/>
        <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: RiskAssessment GenRiskDiabetesT2</b></p><a name="GenRiskDiabetesT2"> </a><a name="hcGenRiskDiabetesT2"> </a><p><b>parent</b>: <a href="Observation-PolyGenicDiagnosticImpExample.html">Observation Diagnostic Implication</a></p><p><b>status</b>: Final</p><p><b>subject</b>: <a href="Patient-CGPatientExample01.html">Adam B. Everyman  Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))</a></p><p><b>basis</b>: </p><ul><li>Variant 1 (Identifier: <code>http://hospital.example.org</code>/11)</li><li>Variant 2 (Identifier: <code>http://hospital.example.org</code>/12)</li><li>Variant 3 (Identifier: <code>http://hospital.example.org</code>/13)</li><li>Variant 4 (Identifier: <code>http://hospital.example.org</code>/14)</li><li>Variant 5 (Identifier: <code>http://hospital.example.org</code>/15)</li><li>Variant 6 (Identifier: <code>http://hospital.example.org</code>/16)</li><li>Variant 7 (Identifier: <code>http://hospital.example.org</code>/17)</li></ul><blockquote><p><b>prediction</b></p><p><b>outcome</b>: <span title="Codes:{http://snomed.info/sct 44054006}">Diabetes mellitus type 2 (disorder)</span></p><p><b>probability</b>: 0.26</p><p><b>qualitativeRisk</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/risk-probability low}">Low likelihood</span></p><p><b>relativeRisk</b>: 1.05</p><p><b>when</b>: ?-53</p></blockquote><blockquote><p><b>prediction</b></p><p><b>outcome</b>: <span title="Codes:{http://snomed.info/sct 44054006}">Diabetes mellitus type 2 (disorder)</span></p><p><b>probability</b>: 0.7</p><p><b>qualitativeRisk</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/risk-probability high}">High likelihood</span></p><p><b>relativeRisk</b>: 2.69</p><p><b>when</b>: ?-65</p></blockquote></div>
      </text>
      <parent>🔗
        <reference value="Observation/PolyGenicDiagnosticImpExample"/>
      </parent>
      <status value="final"/>
      <subject>🔗
        <reference value="Patient/CGPatientExample01"/>
      </subject>
      <basis>
        <identifier>
          <system value="http://hospital.example.org"/>
          <value value="11"/>
        </identifier>
        <display value="Variant 1"/>
      </basis>
      <basis>
        <identifier>
          <system value="http://hospital.example.org"/>
          <value value="12"/>
        </identifier>
        <display value="Variant 2"/>
      </basis>
      <basis>
        <identifier>
          <system value="http://hospital.example.org"/>
          <value value="13"/>
        </identifier>
        <display value="Variant 3"/>
      </basis>
      <basis>
        <identifier>
          <system value="http://hospital.example.org"/>
          <value value="14"/>
        </identifier>
        <display value="Variant 4"/>
      </basis>
      <basis>
        <identifier>
          <system value="http://hospital.example.org"/>
          <value value="15"/>
        </identifier>
        <display value="Variant 5"/>
      </basis>
      <basis>
        <identifier>
          <system value="http://hospital.example.org"/>
          <value value="16"/>
        </identifier>
        <display value="Variant 6"/>
      </basis>
      <basis>
        <identifier>
          <system value="http://hospital.example.org"/>
          <value value="17"/>
        </identifier>
        <display value="Variant 7"/>
      </basis>
      <prediction>
        <outcome>
          <coding>
            <system value="http://snomed.info/sct"/>
            <code value="44054006"/>
            <display value="Diabetes mellitus type 2 (disorder)"/>
          </coding>
        </outcome>
        <probabilityDecimal value="0.26"/>
        <qualitativeRisk>
          <coding>
            <system
                    value="http://terminology.hl7.org/CodeSystem/risk-probability"/>
            <code value="low"/>
            <display value="Low likelihood"/>
          </coding>
        </qualitativeRisk>
        <relativeRisk value="1.05"/>
        <whenRange>
          <high>
            <value value="53"/>
            <unit value="years"/>
            <system value="http://unitsofmeasure.org"/>
            <code value="a"/>
          </high>
        </whenRange>
      </prediction>
      <prediction>
        <outcome>
          <coding>
            <system value="http://snomed.info/sct"/>
            <code value="44054006"/>
            <display value="Diabetes mellitus type 2 (disorder)"/>
          </coding>
        </outcome>
        <probabilityDecimal value="0.7"/>
        <qualitativeRisk>
          <coding>
            <system
                    value="http://terminology.hl7.org/CodeSystem/risk-probability"/>
            <code value="high"/>
            <display value="High likelihood"/>
          </coding>
        </qualitativeRisk>
        <relativeRisk value="2.69"/>
        <whenRange>
          <high>
            <value value="65"/>
            <unit value="years"/>
            <system value="http://unitsofmeasure.org"/>
            <code value="a"/>
          </high>
        </whenRange>
      </prediction>
    </RiskAssessment>