Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

## ValueSet: Genomic Study Method Type ValueSet

Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-method-type-vs | Version: 4.0.0-cibuild
Standards status: Trial-use | Maturity Level: 2 | Computable Name: GenomicStudyMethodTypeVS

Backport of http://hl7.org/fhir/ValueSet/genomicstudy-methodtype

References

- Genomic Study Analysis Method Type

### Logical Definition (CLD)

- Include all codes defined in `http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` version 📦4.0.0-cibuild

### Expansion

Expansion performed internally based on codesystem Genomic Study Method Type CodeSystem v4.0.0-cibuild (CodeSystem)

This value set contains 81 concepts

System | Code | Display (en) | JSON | XML
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | biochemical-genetics | Biochemical Genetics |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | cytogenetics | Cytogenetics |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | molecular-genetics | Molecular Genetics |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | analyte | Analyte |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | chromosome-breakage-studies | Chromosome breakage studies |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | deletion-duplication-analysis | Deletion/duplication analysis |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | detection-of-homozygosity | Detection of homozygosity |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | enzyme-assay | Enzyme assay |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | fish-interphase | FISH-interphase |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | fish-metaphase | FISH-metaphase |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | flow-cytometry | Flow cytometry |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | fish | Fluorescence in situ hybridization (FISH) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | immunohistochemistry | Immunohistochemistry |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | karyotyping | Karyotyping |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | linkage-analysis | Linkage analysis |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | methylation-analysis | Methylation analysis |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | msi | Microsatellite instability testing (MSI) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | m-fish | Multicolor FISH (M-FISH) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | mutation-scanning-of-select-exons | Mutation scanning of select exons |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | mutation-scanning-of-the-entire-coding-region | Mutation scanning of the entire coding region |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | protein-analysis | Protein analysis |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | protein-expression | Protein expression |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | rna-analysis | RNA analysis |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | sequence-analysis-of-select-exons | Sequence analysis of select exons |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | sequence-analysis-of-the-entire-coding-region | Sequence analysis of the entire coding region |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | sister-chromatid-exchange | Sister chromatid exchange |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | targeted-variant-analysis | Targeted variant analysis |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | udp | Uniparental disomy study (UPD) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | aspe | Allele-specific primer extension (ASPE) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | alternative-splicing-detection | Alternative splicing detection |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | bi-directional-sanger-sequence-analysis | Bi-directional Sanger Sequence Analysis |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | c-banding | C-banding |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | cia | Chemiluminescent Immunoassay (CIA) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | chromatin-immunoprecipitation-on-chip | Chromatin Immunoprecipitation on ChIP |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | comparative-genomic-hybridization | Comparative Genomic Hybridization |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | damid | DamID |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | digital-virtual-karyotyping | Digital / Virtual karyotyping |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | digital-microfluidic-microspheres | Digital microfluidic microspheres |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | enzymatic-levels | Enzymatic levels |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | enzyme-activity | Enzyme activity |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | elisa | Enzyme-Linked Immunosorbent Assays (ELISA) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | fluorometry | Fluorometry |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | fusion-genes-microarrays | Fusion genes microarrays |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | g-banding | G-banding |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | gc-ms | Gas chromatographymass spectrometry (GC-MS) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | gene-expression-profiling | Gene expression profiling |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | gene-id | GeneID |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | gold-nanoparticle-probe-technology | Gold nanoparticle probe technology |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | hplc | High-performance liquid chromatography (HPLC) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | lc-ms | Liquid chromatography mass spectrometry (LC-MS) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | lc-ms-ms | Liquid chromatography-tandem mass spectrometry (LC-MS/MS) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | metabolite-levels | Metabolite levels |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | methylation-specific-pcr | Methylation-specific PCR |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | microarray | Microarray |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | mlpa | Multiplex Ligation-dependent Probe Amplification (MLPA) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | ngs-mps | Next-Generation (NGS)/Massively parallel sequencing (MPS) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | ola | Oligonucleotide Ligation Assay (OLA) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | oligonucleotide-hybridization-based-dna-sequencing | Oligonucleotide hybridization-based DNA sequencing |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | other | Other |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | pcr | PCR |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | pcr-with-allele-specific-hybridization | PCR with allele specific hybridization |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | pcr-rflp-with-southern-hybridization | PCR-RFLP with Southern hybridization |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | protein-truncation-test | Protein truncation test |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | pyrosequencing | Pyrosequencing |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | q-banding | Q-banding |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | qpcr | Quantitative PCR (qPCR) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | r-banding | R-banding |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | rflp | RFLP |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | rt-lamp | RT-LAMP |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | rt-pcr | RT-PCR |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | rt-pcr-with-gel-analysis | RT-PCR with gel analysis |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | rt-qpcr | RT-qPCR |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | snp-detection | SNP Detection |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | silver-staining | Silver staining |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | sky | Spectral karyotyping (SKY) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | t-banding | T-banding |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | ms-ms | Tandem mass spectrometry (MS/MS) |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | tetra-nucleotide-repeat-by-pcr-or-southern-blot | Tetra-nucleotide repeat by PCR or Southern Blot |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | tiling-arrays | Tiling Arrays |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | trinucleotide-repeat-by-pcr-or-southern-blot | Trinucleotide repeat by PCR or Southern Blot |  |
`http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs` | uni-directional-sanger-sequencing | Uni-directional Sanger sequencing |  |

Explanation of the columns that may appear on this page:

Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System | The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code | The code (used as the code in the resource instance)
Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition | An explanation of the meaning of the concept
Comments | Additional notes about how to use the code