Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

## : PGxGenomicReportEMERGE-withGrouping - TTL Representation

Page standards status: Informative

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    @prefix fhir: <http://hl7.org/fhir/> .
    @prefix loinc: <https://loinc.org/rdf/> .
    @prefix owl: <http://www.w3.org/2002/07/owl#> .
    @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
    @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
    @prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

    # - resource -------------------------------------------------------------------

     a fhir:DiagnosticReport ;
      fhir:nodeRole fhir:treeRoot ;
      fhir:id [ fhir:v "PGxGenomicReportEMERGE-withGrouping"] ; #
      fhir:meta [
        ( fhir:profile [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report>     ] )
      ] ; #
      fhir:text [
    fhir:status [ fhir:v "generated" ] ;
    fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: DiagnosticReport PGxGenomicReportEMERGE-withGrouping</b></p><a name=\"PGxGenomicReportEMERGE-withGrouping\"> </a><a name=\"hcPGxGenomicReportEMERGE-withGrouping\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genomic-report.html\">Genomic Report</a></p></div><h2><span title=\"Codes:{http://loinc.org 51969-4}, {http://example.org/hgsc.bcm.edu/lab-test-codes/ emerge-seq-ngs-pnl}\">Genetic analysis report</span> (<span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span>) </h2><table class=\"grid\"><tr><td>Subject</td><td>Adam B. Everyman  Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))</td></tr><tr><td>When For</td><td>2020-01-01 00:00:00-0500</td></tr><tr><td>Reported</td><td>2020-01-01 00:00:00-0500</td></tr><tr><td>Performer</td><td> <a href=\"Organization-ExampleOrg.html\">Organization some lab</a></td></tr></table><p><b>Report Details</b></p><table class=\"grid\"><tr><td><b>Code</b></td><td><b>Value</b></td><td><b>Flags</b></td><td><b>When For</b></td></tr><tr><td><a href=\"Observation-GrouperEx01.html\"><span title=\"Codes:{http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl C43359}\">Group</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href=\"Observation-GrouperEx02.html\"><span title=\"Codes:{http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl C43359}\">Group</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href=\"Observation-GrouperEx03.html\"><span title=\"Codes:{http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl C43359}\">Group</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr></table></div>"^^rdf:XMLLiteral ]
      ] ; #
      fhir:extension ( [
    fhir:url [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action>     ] ;
    fhir:value [
    a fhir:Reference ;
    fhir:l fhir:Task/PGxRecEx01 ;
    fhir:reference [ fhir:v "Task/PGxRecEx01" ] ;
    fhir:display [ fhir:v "No clopidogrel" ]     ]
      ] [
    fhir:url [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action>     ] ;
    fhir:value [
    a fhir:Reference ;
    fhir:l fhir:Task/PGxRecEx02 ;
    fhir:reference [ fhir:v "Task/PGxRecEx02" ] ;
    fhir:display [ fhir:v "No voriconazole" ]     ]
      ] [
    fhir:url [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action>     ] ;
    fhir:value [
    a fhir:Reference ;
    fhir:l fhir:Task/PGxRecEx03 ;
    fhir:reference [ fhir:v "Task/PGxRecEx03" ] ;
    fhir:display [ fhir:v "50% citalopram" ]     ]
      ] [
    fhir:url [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action>     ] ;
    fhir:value [
    a fhir:Reference ;
    fhir:l fhir:Task/PGxRecEx04 ;
    fhir:reference [ fhir:v "Task/PGxRecEx04" ] ;
    fhir:display [ fhir:v "50% escitalopram" ]     ]
      ] [
    fhir:url [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action>     ] ;
    fhir:value [
    a fhir:Reference ;
    fhir:l fhir:Task/PGxRecEx04 ;
    fhir:reference [ fhir:v "Task/PGxRecEx04" ] ;
    fhir:display [ fhir:v "50% amitriptyline" ]     ]
      ] ) ; #
      fhir:basedOn ( [
    fhir:l fhir:ServiceRequest/eMERGEServiceRequest ;
    fhir:reference [ fhir:v "ServiceRequest/eMERGEServiceRequest" ]
      ] ) ; #
      fhir:status [ fhir:v "final"] ; #
      fhir:category ( [
        ( fhir:coding [
    fhir:system [
    fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ;
    fhir:l <http://terminology.hl7.org/CodeSystem/v2-0074>       ] ;
    fhir:code [ fhir:v "GE" ]     ] )
      ] ) ; #
      fhir:code [
        ( fhir:coding [
    a loinc:51969-4 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>       ] ;
    fhir:code [ fhir:v "51969-4" ]     ] [
    fhir:system [
    fhir:v "http://example.org/hgsc.bcm.edu/lab-test-codes/"^^xsd:anyURI ;
    fhir:l <http://example.org/hgsc.bcm.edu/lab-test-codes/>       ] ;
    fhir:code [ fhir:v "emerge-seq-ngs-pnl" ]     ] )
      ] ; #
      fhir:subject [
    fhir:l fhir:Patient/CGPatientExample01 ;
    fhir:reference [ fhir:v "Patient/CGPatientExample01" ]
      ] ; #
      fhir:effective [
    a fhir:DateTime ;
    fhir:v "2020-01-01T00:00:00-05:00"^^xsd:dateTime
      ] ; #
      fhir:issued [ fhir:v "2020-01-01T00:00:00-05:00"^^xsd:dateTime] ; #
      fhir:performer ( [
    fhir:l fhir:Organization/ExampleOrg ;
    fhir:reference [ fhir:v "Organization/ExampleOrg" ]
      ] ) ; #
      fhir:result ( [
    fhir:l fhir:Observation/GrouperEx01 ;
    fhir:reference [ fhir:v "Observation/GrouperEx01" ] ;
    fhir:display [ fhir:v "Therapeutic Implications" ]
      ] [
    fhir:l fhir:Observation/GrouperEx02 ;
    fhir:reference [ fhir:v "Observation/GrouperEx02" ] ;
    fhir:display [ fhir:v "Genotypes" ]
      ] [
    fhir:l fhir:Observation/GrouperEx03 ;
    fhir:reference [ fhir:v "Observation/GrouperEx03" ] ;
    fhir:display [ fhir:v "Regions studied and Variants" ]
      ] ) . #