Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

## : lungMass - TTL Representation

Page standards status: Informative

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    @prefix fhir: <http://hl7.org/fhir/> .
    @prefix owl: <http://www.w3.org/2002/07/owl#> .
    @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
    @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
    @prefix sct: <http://snomed.info/id/> .
    @prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

    # - resource -------------------------------------------------------------------

     a fhir:Procedure ;
      fhir:nodeRole fhir:treeRoot ;
      fhir:id [ fhir:v "lungMass"] ; #
      fhir:meta [
        ( fhir:profile [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study>     ] )
      ] ; #
      fhir:text [
    fhir:status [ fhir:v "extensions" ] ;
    fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Procedure lungMass</b></p><a name=\"lungMass\"> </a><a name=\"hclungMass\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genomic-study.html\">Genomic Study</a></p></div><p><b>Genomic Study Analysis Extension</b>: <a href=\"Procedure-lungMass-analysis1.html\">Procedure: extension = Sequence analysis of the entire coding region,Somatic,SNV,MNV,delins,GRCh38,-&gt;Specimen: identifier = http://example.org/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,-&gt;John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --&gt; (ongoing))),,,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.</a></p><p><b>Genomic Study Analysis Extension</b>: <a href=\"Procedure-lungMass-analysis2.html\">Procedure: extension = Deletion/duplication analysis,Somatic,CNV,GRCh38,-&gt;Specimen: identifier = http://example.org/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,-&gt;John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --&gt; (ongoing))),,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.</a></p><p><b>basedOn</b>: <a href=\"ServiceRequest-genomicServiceRequest.html\">ServiceRequest Molecular genetic test (procedure)</a></p><p><b>status</b>: Completed</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span></p><p><b>code</b>: <span title=\"Codes:\">Solid tumor whole exome sequencing panel</span></p><p><b>subject</b>: <a href=\"Patient-genomicPatient.html\">John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --&gt; (ongoing)))</a></p><p><b>performed</b>: 2019-03-01</p><p><b>asserter</b>: <a href=\"Practitioner-practitioner02.html\">Practitioner Jane Doel </a></p><p><b>reasonCode</b>: <span title=\"Codes:{http://snomed.info/sct 309529002}\">Lung mass (finding)</span></p><p><b>note</b>: </p><blockquote><div><p>For technical reasons, PIK3CB was deemed uncallable.</p>\n</div></blockquote></div>"^^rdf:XMLLiteral ]
      ] ; #
      fhir:extension ( [
    fhir:url [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext>     ] ;
    fhir:value [
    a fhir:Reference ;
    fhir:l fhir:Procedure/lungMass-analysis1 ;
    fhir:reference [ fhir:v "Procedure/lungMass-analysis1" ]     ]
      ] [
    fhir:url [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext>     ] ;
    fhir:value [
    a fhir:Reference ;
    fhir:l fhir:Procedure/lungMass-analysis2 ;
    fhir:reference [ fhir:v "Procedure/lungMass-analysis2" ]     ]
      ] ) ; #
      fhir:basedOn ( [
    fhir:l fhir:ServiceRequest/genomicServiceRequest ;
    fhir:reference [ fhir:v "ServiceRequest/genomicServiceRequest" ]
      ] ) ; #
      fhir:status [ fhir:v "completed"] ; #
      fhir:category [
        ( fhir:coding [
    fhir:system [
    fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ;
    fhir:l <http://terminology.hl7.org/CodeSystem/observation-category>       ] ;
    fhir:code [ fhir:v "laboratory" ]     ] )
      ] ; #
      fhir:code [
    fhir:text [ fhir:v "Solid tumor whole exome sequencing panel" ]
      ] ; #
      fhir:subject [
    fhir:l fhir:Patient/genomicPatient ;
    fhir:reference [ fhir:v "Patient/genomicPatient" ]
      ] ; #
      fhir:performed [
    a fhir:DateTime ;
    fhir:v "2019-03-01"^^xsd:date
      ] ; #
      fhir:asserter [
    fhir:l fhir:Practitioner/practitioner02 ;
    fhir:reference [ fhir:v "Practitioner/practitioner02" ]
      ] ; #
      fhir:reasonCode ( [
        ( fhir:coding [
    a sct:309529002 ;
    fhir:system [
    fhir:v "http://snomed.info/sct"^^xsd:anyURI ;
    fhir:l <http://snomed.info/sct>       ] ;
    fhir:code [ fhir:v "309529002" ] ;
    fhir:display [ fhir:v "Lung mass (finding)" ]     ] )
      ] ) ; #
      fhir:note ( [
    fhir:text [ fhir:v "For technical reasons, PIK3CB was deemed uncallable." ]
      ] ) . #