Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

## : lungMass - XML Representation

Page standards status: Informative

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    <Procedure xmlns="http://hl7.org/fhir">
      <id value="lungMass"/>
      <meta>
        <profile
                 value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study"/>
      </meta>
      <text>
        <status value="extensions"/>
        <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Procedure lungMass</b></p><a name="lungMass"> </a><a name="hclungMass"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-genomic-study.html">Genomic Study</a></p></div><p><b>Genomic Study Analysis Extension</b>: <a href="Procedure-lungMass-analysis1.html">Procedure: extension = Sequence analysis of the entire coding region,Somatic,SNV,MNV,delins,GRCh38,-&gt;Specimen: identifier = http://example.org/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,-&gt;John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --&gt; (ongoing))),,,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.</a></p><p><b>Genomic Study Analysis Extension</b>: <a href="Procedure-lungMass-analysis2.html">Procedure: extension = Deletion/duplication analysis,Somatic,CNV,GRCh38,-&gt;Specimen: identifier = http://example.org/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,-&gt;John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --&gt; (ongoing))),,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.</a></p><p><b>basedOn</b>: <a href="ServiceRequest-genomicServiceRequest.html">ServiceRequest Molecular genetic test (procedure)</a></p><p><b>status</b>: Completed</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span></p><p><b>code</b>: <span title="Codes:">Solid tumor whole exome sequencing panel</span></p><p><b>subject</b>: <a href="Patient-genomicPatient.html">John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --&gt; (ongoing)))</a></p><p><b>performed</b>: 2019-03-01</p><p><b>asserter</b>: <a href="Practitioner-practitioner02.html">Practitioner Jane Doel </a></p><p><b>reasonCode</b>: <span title="Codes:{http://snomed.info/sct 309529002}">Lung mass (finding)</span></p><p><b>note</b>: </p><blockquote><div><p>For technical reasons, PIK3CB was deemed uncallable.</p>
    </div></blockquote></div>
      </text>
      <extension
                 url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext">
        <valueReference>🔗
          <reference value="Procedure/lungMass-analysis1"/>
        </valueReference>
      </extension>
      <extension
                 url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext">
        <valueReference>🔗
          <reference value="Procedure/lungMass-analysis2"/>
        </valueReference>
      </extension>
      <basedOn>🔗
        <reference value="ServiceRequest/genomicServiceRequest"/>
      </basedOn>
      <status value="completed"/>
      <category>
        <coding>
          <system
                  value="http://terminology.hl7.org/CodeSystem/observation-category"/>
          <code value="laboratory"/>
        </coding>
      </category>
      <code>
        <text value="Solid tumor whole exome sequencing panel"/>
      </code>
      <subject>🔗
        <reference value="Patient/genomicPatient"/>
      </subject>
      <performedDateTime value="2019-03-01"/>
      <asserter>🔗
        <reference value="Practitioner/practitioner02"/>
      </asserter>
      <reasonCode>
        <coding>
          <system value="http://snomed.info/sct"/>
          <code value="309529002"/>
          <display value="Lung mass (finding)"/>
        </coding>
      </reasonCode>
      <note>
        <text value="For technical reasons, PIK3CB was deemed uncallable."/>
      </note>
    </Procedure>