Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

## : PGxGenomicReportEMERGE-withGrouping - XML Representation

Page standards status: Informative

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    <DiagnosticReport xmlns="http://hl7.org/fhir">
      <id value="PGxGenomicReportEMERGE-withGrouping"/>
      <meta>
        <profile
                 value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report"/>
      </meta>
      <text>
        <status value="generated"/>
        <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: DiagnosticReport PGxGenomicReportEMERGE-withGrouping</b></p><a name="PGxGenomicReportEMERGE-withGrouping"> </a><a name="hcPGxGenomicReportEMERGE-withGrouping"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-genomic-report.html">Genomic Report</a></p></div><h2><span title="Codes:{http://loinc.org 51969-4}, {http://example.org/hgsc.bcm.edu/lab-test-codes/ emerge-seq-ngs-pnl}">Genetic analysis report</span> (<span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span>) </h2><table class="grid"><tr><td>Subject</td><td>Adam B. Everyman  Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))</td></tr><tr><td>When For</td><td>2020-01-01 00:00:00-0500</td></tr><tr><td>Reported</td><td>2020-01-01 00:00:00-0500</td></tr><tr><td>Performer</td><td> <a href="Organization-ExampleOrg.html">Organization some lab</a></td></tr></table><p><b>Report Details</b></p><table class="grid"><tr><td><b>Code</b></td><td><b>Value</b></td><td><b>Flags</b></td><td><b>When For</b></td></tr><tr><td><a href="Observation-GrouperEx01.html"><span title="Codes:{http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl C43359}">Group</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-GrouperEx02.html"><span title="Codes:{http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl C43359}">Group</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href="Observation-GrouperEx03.html"><span title="Codes:{http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl C43359}">Group</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr></table></div>
      </text>
      <extension
                 url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action">
        <valueReference>🔗
          <reference value="Task/PGxRecEx01"/>
          <display value="No clopidogrel"/>
        </valueReference>
      </extension>
      <extension
                 url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action">
        <valueReference>🔗
          <reference value="Task/PGxRecEx02"/>
          <display value="No voriconazole"/>
        </valueReference>
      </extension>
      <extension
                 url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action">
        <valueReference>🔗
          <reference value="Task/PGxRecEx03"/>
          <display value="50% citalopram"/>
        </valueReference>
      </extension>
      <extension
                 url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action">
        <valueReference>🔗
          <reference value="Task/PGxRecEx04"/>
          <display value="50% escitalopram"/>
        </valueReference>
      </extension>
      <extension
                 url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action">
        <valueReference>🔗
          <reference value="Task/PGxRecEx04"/>
          <display value="50% amitriptyline"/>
        </valueReference>
      </extension>
      <basedOn>🔗
        <reference value="ServiceRequest/eMERGEServiceRequest"/>
      </basedOn>
      <status value="final"/>
      <category>
        <coding>
          <system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
          <code value="GE"/>
        </coding>
      </category>
      <code>
        <coding>
          <system value="http://loinc.org"/>
          <code value="51969-4"/>
        </coding>
        <coding>
          <system value="http://example.org/hgsc.bcm.edu/lab-test-codes/"/>
          <code value="emerge-seq-ngs-pnl"/>
        </coding>
      </code>
      <subject>🔗
        <reference value="Patient/CGPatientExample01"/>
      </subject>
      <effectiveDateTime value="2020-01-01T00:00:00-05:00"/>
      <issued value="2020-01-01T00:00:00-05:00"/>
      <performer>🔗
        <reference value="Organization/ExampleOrg"/>
      </performer>
      <result>🔗
        <reference value="Observation/GrouperEx01"/>
        <display value="Therapeutic Implications"/>
      </result>
      <result>🔗
        <reference value="Observation/GrouperEx02"/>
        <display value="Genotypes"/>
      </result>
      <result>🔗
        <reference value="Observation/GrouperEx03"/>
        <display value="Regions studied and Variants"/>
      </result>
    </DiagnosticReport>