Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

## : bundle-sequence-phase-relation-CYP2C19 - TTL Representation

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    @prefix fhir: <http://hl7.org/fhir/> .
    @prefix loinc: <https://loinc.org/rdf/> .
    @prefix owl: <http://www.w3.org/2002/07/owl#> .
    @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
    @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
    @prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

    # - resource -------------------------------------------------------------------

     a fhir:Bundle ;
      fhir:nodeRole fhir:treeRoot ;
      fhir:id [ fhir:v "bundle-sequence-phase-relation-CYP2C19"] ; #
      fhir:type [ fhir:v "transaction"] ; #
      fhir:entry ( [
    fhir:fullUrl [
    fhir:v "urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfe60"^^xsd:anyURI ;
    fhir:l <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfe60>     ] ;
        ( fhir:resource <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfe60> ) ;
    fhir:request [
    fhir:method [ fhir:v "POST" ] ;
    fhir:url [
    fhir:v "Observation"^^xsd:anyURI ;
    fhir:l fhir:Observation       ]     ]
      ] [
    fhir:fullUrl [
    fhir:v "urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe01"^^xsd:anyURI ;
    fhir:l <urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe01>     ] ;
        ( fhir:resource <urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe01> ) ;
    fhir:request [
    fhir:method [ fhir:v "POST" ] ;
    fhir:url [
    fhir:v "Observation"^^xsd:anyURI ;
    fhir:l fhir:Observation       ]     ]
      ] [
    fhir:fullUrl [
    fhir:v "urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe02"^^xsd:anyURI ;
    fhir:l <urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe02>     ] ;
        ( fhir:resource <urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe02> ) ;
    fhir:request [
    fhir:method [ fhir:v "POST" ] ;
    fhir:url [
    fhir:v "Observation"^^xsd:anyURI ;
    fhir:l fhir:Observation       ]     ]
      ] [
    fhir:fullUrl [
    fhir:v "urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe03"^^xsd:anyURI ;
    fhir:l <urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe03>     ] ;
        ( fhir:resource <urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe03> ) ;
    fhir:request [
    fhir:method [ fhir:v "POST" ] ;
    fhir:url [
    fhir:v "DiagnosticReport"^^xsd:anyURI ;
    fhir:l fhir:DiagnosticReport       ]     ]
      ] [
    fhir:fullUrl [
    fhir:v "urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab"^^xsd:anyURI ;
    fhir:l <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab>     ] ;
        ( fhir:resource <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab> ) ;
    fhir:request [
    fhir:method [ fhir:v "POST" ] ;
    fhir:url [
    fhir:v "Organization"^^xsd:anyURI ;
    fhir:l fhir:Organization       ]     ]
      ] [
    fhir:fullUrl [
    fhir:v "urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac"^^xsd:anyURI ;
    fhir:l <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac>     ] ;
        ( fhir:resource <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac> ) ;
    fhir:request [
    fhir:method [ fhir:v "POST" ] ;
    fhir:url [
    fhir:v "Patient"^^xsd:anyURI ;
    fhir:l fhir:Patient       ]     ]
      ] ) . #

    <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfe60> a fhir:Observation ;
      fhir:id [ fhir:v "dv-5c7e9e1ca8252"] ; #
      fhir:meta [
        ( fhir:profile [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant>     ] )
      ] ; #
      fhir:text [
    fhir:status [ fhir:v "generated" ] ;
    fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_dv-5c7e9e1ca8252\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation dv-5c7e9e1ca8252</b></p><a name=\"dv-5c7e9e1ca8252\"> </a><a name=\"hcdv-5c7e9e1ca8252\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-variant.html\">Variant</a></p></div><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69548-6}\">Genetic variant assessment</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfeac\">John Storm(official) Male, DoB: 1986-12-31</a></p><p><b>effective</b>: 2019-03-05</p><p><b>issued</b>: 2019-03-05 16:04:44+0000</p><p><b>performer</b>: <a href=\"Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfeab\">Organization aTypingLab Inc</a></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA9633-4}\">Present</span></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 62374-4}\">Human reference sequence assembly version</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA14029-5}\">GRCh37</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48013-7}\">Genomic reference sequence ID</span></p><p><b>value</b>: <span title=\"Codes:{http://www.ncbi.nlm.nih.gov/refseq NC_000010.10}\">NC_000010.10</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 53034-5}\">Allelic state</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA6706-1}\">heterozygous</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69547-8}\">Ref nucleotide</span></p><p><b>value</b>: C</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69551-0}\">Alt allele</span></p><p><b>value</b>: A</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 92822-6}\">Genomic coord system</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA30102-0}\">1-based character counting</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 81254-5}\">Genomic allele start-end</span></p><p><b>value</b>: 96527334-?</p></blockquote></div>"^^rdf:XMLLiteral ]
      ] ; #
      fhir:status [ fhir:v "final"] ; #
      fhir:category ( [
        ( fhir:coding [
    fhir:system [
    fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ;
    fhir:l <http://terminology.hl7.org/CodeSystem/observation-category>       ] ;
    fhir:code [ fhir:v "laboratory" ]     ] )
      ] [
        ( fhir:coding [
    fhir:system [
    fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ;
    fhir:l <http://terminology.hl7.org/CodeSystem/v2-0074>       ] ;
    fhir:code [ fhir:v "GE" ]     ] )
      ] ) ; #
      fhir:code [
        ( fhir:coding [
    a loinc:69548-6 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>       ] ;
    fhir:code [ fhir:v "69548-6" ] ;
    fhir:display [ fhir:v "Genetic variant assessment" ]     ] )
      ] ; #
      fhir:subject [
    fhir:l <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac> ;
    fhir:reference [ fhir:v "urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac" ]
      ] ; #
      fhir:effective [
    a fhir:DateTime ;
    fhir:v "2019-03-05"^^xsd:date
      ] ; #
      fhir:issued [ fhir:v "2019-03-05T16:04:44+00:00"^^xsd:dateTime] ; #
      fhir:performer ( [
    fhir:l <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab> ;
    fhir:reference [ fhir:v "urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab" ]
      ] ) ; #
      fhir:value [
    a fhir:CodeableConcept ;
        ( fhir:coding [
    a loinc:LA9633-4 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>       ] ;
    fhir:code [ fhir:v "LA9633-4" ] ;
    fhir:display [ fhir:v "Present" ]     ] )
      ] ; #
      fhir:component ( [
    fhir:code [
          ( fhir:coding [
    a loinc:62374-4 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "62374-4" ] ;
    fhir:display [ fhir:v "Human reference sequence assembly version" ]       ] )     ] ;
    fhir:value [
    a fhir:CodeableConcept ;
          ( fhir:coding [
    a loinc:LA14029-5 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "LA14029-5" ] ;
    fhir:display [ fhir:v "GRCh37" ]       ] )     ]
      ] [
    fhir:code [
          ( fhir:coding [
    a loinc:48013-7 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "48013-7" ] ;
    fhir:display [ fhir:v "Genomic reference sequence ID" ]       ] )     ] ;
    fhir:value [
    a fhir:CodeableConcept ;
          ( fhir:coding [
    fhir:system [
    fhir:v "http://www.ncbi.nlm.nih.gov/refseq"^^xsd:anyURI ;
    fhir:l <http://www.ncbi.nlm.nih.gov/refseq>         ] ;
    fhir:code [ fhir:v "NC_000010.10" ]       ] )     ]
      ] [
    fhir:code [
          ( fhir:coding [
    a loinc:53034-5 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "53034-5" ] ;
    fhir:display [ fhir:v "Allelic state" ]       ] )     ] ;
    fhir:value [
    a fhir:CodeableConcept ;
          ( fhir:coding [
    a loinc:LA6706-1 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "LA6706-1" ] ;
    fhir:display [ fhir:v "heterozygous" ]       ] )     ]
      ] [
    fhir:code [
          ( fhir:coding [
    a loinc:69547-8 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "69547-8" ] ;
    fhir:display [ fhir:v "Ref nucleotide" ]       ] )     ] ;
    fhir:value [
    a fhir:String ;
    fhir:v "C"     ]
      ] [
    fhir:code [
          ( fhir:coding [
    a loinc:69551-0 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "69551-0" ] ;
    fhir:display [ fhir:v "Alt allele" ]       ] )     ] ;
    fhir:value [
    a fhir:String ;
    fhir:v "A"     ]
      ] [
    fhir:code [
          ( fhir:coding [
    a loinc:92822-6 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "92822-6" ] ;
    fhir:display [ fhir:v "Genomic coord system" ]       ] )     ] ;
    fhir:value [
    a fhir:CodeableConcept ;
          ( fhir:coding [
    a loinc:LA30102-0 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "LA30102-0" ]       ] )     ]
      ] [
    fhir:code [
          ( fhir:coding [
    a loinc:81254-5 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "81254-5" ]       ] )     ] ;
    fhir:value [
    a fhir:Range ;
    fhir:low [
    fhir:value [ fhir:v "96527334"^^xsd:decimal ]       ]     ]
      ] ) . #

    <urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe01> a fhir:Observation ;
      fhir:id [ fhir:v "dv-5c7e9e1ca82e4"] ; #
      fhir:meta [
        ( fhir:profile [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant>     ] )
      ] ; #
      fhir:text [
    fhir:status [ fhir:v "generated" ] ;
    fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_dv-5c7e9e1ca82e4\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation dv-5c7e9e1ca82e4</b></p><a name=\"dv-5c7e9e1ca82e4\"> </a><a name=\"hcdv-5c7e9e1ca82e4\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-variant.html\">Variant</a></p></div><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69548-6}\">Genetic variant assessment</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfeac\">John Storm(official) Male, DoB: 1986-12-31</a></p><p><b>effective</b>: 2019-03-05</p><p><b>issued</b>: 2019-03-05 16:04:44+0000</p><p><b>performer</b>: <a href=\"Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfeab\">Organization aTypingLab Inc</a></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA9633-4}\">Present</span></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 62374-4}\">Human reference sequence assembly version</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA14029-5}\">GRCh37</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 48013-7}\">Genomic reference sequence ID</span></p><p><b>value</b>: <span title=\"Codes:{http://www.ncbi.nlm.nih.gov/refseq NC_000010.10}\">NC_000010.10</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 53034-5}\">Allelic state</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA6706-1}\">heterozygous</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69547-8}\">Ref nucleotide</span></p><p><b>value</b>: C</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 69551-0}\">Alt allele</span></p><p><b>value</b>: G</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 92822-6}\">Genomic coord system</span></p><p><b>value</b>: <span title=\"Codes:{http://loinc.org LA30102-0}\">1-based character counting</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 81254-5}\">Genomic allele start-end</span></p><p><b>value</b>: 96527722-?</p></blockquote></div>"^^rdf:XMLLiteral ]
      ] ; #
      fhir:status [ fhir:v "final"] ; #
      fhir:category ( [
        ( fhir:coding [
    fhir:system [
    fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ;
    fhir:l <http://terminology.hl7.org/CodeSystem/observation-category>       ] ;
    fhir:code [ fhir:v "laboratory" ]     ] )
      ] [
        ( fhir:coding [
    fhir:system [
    fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ;
    fhir:l <http://terminology.hl7.org/CodeSystem/v2-0074>       ] ;
    fhir:code [ fhir:v "GE" ]     ] )
      ] ) ; #
      fhir:code [
        ( fhir:coding [
    a loinc:69548-6 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>       ] ;
    fhir:code [ fhir:v "69548-6" ] ;
    fhir:display [ fhir:v "Genetic variant assessment" ]     ] )
      ] ; #
      fhir:subject [
    fhir:l <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac> ;
    fhir:reference [ fhir:v "urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac" ]
      ] ; #
      fhir:effective [
    a fhir:DateTime ;
    fhir:v "2019-03-05"^^xsd:date
      ] ; #
      fhir:issued [ fhir:v "2019-03-05T16:04:44+00:00"^^xsd:dateTime] ; #
      fhir:performer ( [
    fhir:l <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab> ;
    fhir:reference [ fhir:v "urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab" ]
      ] ) ; #
      fhir:value [
    a fhir:CodeableConcept ;
        ( fhir:coding [
    a loinc:LA9633-4 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>       ] ;
    fhir:code [ fhir:v "LA9633-4" ] ;
    fhir:display [ fhir:v "Present" ]     ] )
      ] ; #
      fhir:component ( [
    fhir:code [
          ( fhir:coding [
    a loinc:62374-4 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "62374-4" ] ;
    fhir:display [ fhir:v "Human reference sequence assembly version" ]       ] )     ] ;
    fhir:value [
    a fhir:CodeableConcept ;
          ( fhir:coding [
    a loinc:LA14029-5 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "LA14029-5" ] ;
    fhir:display [ fhir:v "GRCh37" ]       ] )     ]
      ] [
    fhir:code [
          ( fhir:coding [
    a loinc:48013-7 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "48013-7" ] ;
    fhir:display [ fhir:v "Genomic reference sequence ID" ]       ] )     ] ;
    fhir:value [
    a fhir:CodeableConcept ;
          ( fhir:coding [
    fhir:system [
    fhir:v "http://www.ncbi.nlm.nih.gov/refseq"^^xsd:anyURI ;
    fhir:l <http://www.ncbi.nlm.nih.gov/refseq>         ] ;
    fhir:code [ fhir:v "NC_000010.10" ]       ] )     ]
      ] [
    fhir:code [
          ( fhir:coding [
    a loinc:53034-5 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "53034-5" ] ;
    fhir:display [ fhir:v "Allelic state" ]       ] )     ] ;
    fhir:value [
    a fhir:CodeableConcept ;
          ( fhir:coding [
    a loinc:LA6706-1 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "LA6706-1" ] ;
    fhir:display [ fhir:v "heterozygous" ]       ] )     ]
      ] [
    fhir:code [
          ( fhir:coding [
    a loinc:69547-8 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "69547-8" ] ;
    fhir:display [ fhir:v "Ref nucleotide" ]       ] )     ] ;
    fhir:value [
    a fhir:String ;
    fhir:v "C"     ]
      ] [
    fhir:code [
          ( fhir:coding [
    a loinc:69551-0 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "69551-0" ] ;
    fhir:display [ fhir:v "Alt allele" ]       ] )     ] ;
    fhir:value [
    a fhir:String ;
    fhir:v "G"     ]
      ] [
    fhir:code [
          ( fhir:coding [
    a loinc:92822-6 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "92822-6" ] ;
    fhir:display [ fhir:v "Genomic coord system" ]       ] )     ] ;
    fhir:value [
    a fhir:CodeableConcept ;
          ( fhir:coding [
    a loinc:LA30102-0 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "LA30102-0" ]       ] )     ]
      ] [
    fhir:code [
          ( fhir:coding [
    a loinc:81254-5 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>         ] ;
    fhir:code [ fhir:v "81254-5" ]       ] )     ] ;
    fhir:value [
    a fhir:Range ;
    fhir:low [
    fhir:value [ fhir:v "96527722"^^xsd:decimal ]       ]     ]
      ] ) . #

    <urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe02> a fhir:Observation ;
      fhir:id [ fhir:v "sid-5c7e9e1ca8a29"] ; #
      fhir:meta [
        ( fhir:profile [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/sequence-phase-relationship"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/sequence-phase-relationship>     ] )
      ] ; #
      fhir:text [
    fhir:status [ fhir:v "generated" ] ;
    fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Observation_sid-5c7e9e1ca8a29\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Observation sid-5c7e9e1ca8a29</b></p><a name=\"sid-5c7e9e1ca8a29\"> </a><a name=\"hcsid-5c7e9e1ca8a29\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-sequence-phase-relationship.html\">Sequence Phase Relationship</a></p></div><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 82120-7}\">Allelic phase</span></p><p><b>subject</b>: <a href=\"Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfeac\">John Storm(official) Male, DoB: 1986-12-31</a></p><p><b>effective</b>: 2019-03-05</p><p><b>issued</b>: 2019-03-05 16:04:44+0000</p><p><b>performer</b>: <a href=\"Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfeab\">Organization aTypingLab Inc</a></p><p><b>value</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/sequence-phase-relationship-cs Cis}\">Cis</span></p><p><b>derivedFrom</b>: </p><ul><li><a href=\"Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfe60\">Observation Genetic variant assessment</a></li><li><a href=\"Bundle-bundle-CYP2C19.html#urn-uuid-20ac0aeb-6bd4-4e92-a891-d44a807bfe01\">Observation Genetic variant assessment</a></li></ul></div>"^^rdf:XMLLiteral ]
      ] ; #
      fhir:status [ fhir:v "final"] ; #
      fhir:category ( [
        ( fhir:coding [
    fhir:system [
    fhir:v "http://terminology.hl7.org/CodeSystem/observation-category"^^xsd:anyURI ;
    fhir:l <http://terminology.hl7.org/CodeSystem/observation-category>       ] ;
    fhir:code [ fhir:v "laboratory" ]     ] )
      ] [
        ( fhir:coding [
    fhir:system [
    fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ;
    fhir:l <http://terminology.hl7.org/CodeSystem/v2-0074>       ] ;
    fhir:code [ fhir:v "GE" ]     ] )
      ] ) ; #
      fhir:code [
        ( fhir:coding [
    a loinc:82120-7 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>       ] ;
    fhir:code [ fhir:v "82120-7" ] ;
    fhir:display [ fhir:v "Allelic phase" ]     ] )
      ] ; #
      fhir:subject [
    fhir:l <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac> ;
    fhir:reference [ fhir:v "urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac" ]
      ] ; #
      fhir:effective [
    a fhir:DateTime ;
    fhir:v "2019-03-05"^^xsd:date
      ] ; #
      fhir:issued [ fhir:v "2019-03-05T16:04:44+00:00"^^xsd:dateTime] ; #
      fhir:performer ( [
    fhir:l <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab> ;
    fhir:reference [ fhir:v "urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab" ]
      ] ) ; #
      fhir:value [
    a fhir:CodeableConcept ;
        ( fhir:coding [
    fhir:system [
    fhir:v "http://terminology.hl7.org/CodeSystem/sequence-phase-relationship-cs"^^xsd:anyURI ;
    fhir:l <http://terminology.hl7.org/CodeSystem/sequence-phase-relationship-cs>       ] ;
    fhir:code [ fhir:v "Cis" ] ;
    fhir:display [ fhir:v "Cis" ]     ] )
      ] ; #
      fhir:derivedFrom ( [
    fhir:l <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfe60> ;
    fhir:reference [ fhir:v "urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfe60" ]
      ] [
    fhir:l <urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe01> ;
    fhir:reference [ fhir:v "urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe01" ]
      ] ) . #

    <urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe03> a fhir:DiagnosticReport ;
      fhir:id [ fhir:v "sequence-phase-relation-CYP2C19"] ; #
      fhir:meta [
        ( fhir:profile [
    fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report"^^xsd:anyURI ;
    fhir:l <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report>     ] )
      ] ; #
      fhir:text [
    fhir:status [ fhir:v "generated" ] ;
    fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"DiagnosticReport_sequence-phase-relation-CYP2C19\"> </a><p class=\"res-header-id\"><b>Generated Narrative: DiagnosticReport sequence-phase-relation-CYP2C19</b></p><a name=\"sequence-phase-relation-CYP2C19\"> </a><a name=\"hcsequence-phase-relation-CYP2C19\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genomic-report.html\">Genomic Report</a></p></div><h2><span title=\"Codes:{http://loinc.org 51969-4}\">Genetic analysis report</span> (<span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span>) </h2><table class=\"grid\"/><p><b>Report Details</b></p><table class=\"grid\"><tr><td><b>Code</b></td><td><b>Value</b></td><td><b>Flags</b></td><td><b>When For</b></td><td><b>Reported</b></td></tr><tr><td><a href=\"Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfe60\"><span title=\"Codes:{http://loinc.org 69548-6}\">Genetic variant assessment</span></a></td><td><span title=\"Codes:{http://loinc.org LA9633-4}\">Present</span></td><td>Final</td><td>2019-03-05</td><td>2019-03-05 16:04:44+0000</td></tr><tr><td><a href=\"Bundle-bundle-CYP2C19.html#urn-uuid-20ac0aeb-6bd4-4e92-a891-d44a807bfe01\"><span title=\"Codes:{http://loinc.org 69548-6}\">Genetic variant assessment</span></a></td><td><span title=\"Codes:{http://loinc.org LA9633-4}\">Present</span></td><td>Final</td><td>2019-03-05</td><td>2019-03-05 16:04:44+0000</td></tr><tr><td><a href=\"Bundle-bundle-sequence-phase-relation-CYP2C19.html#urn-uuid-20ac0aeb-6bd4-4e92-a891-d44a807bfe02\"><span title=\"Codes:{http://loinc.org 82120-7}\">Allelic phase</span></a></td><td><span title=\"Codes:{http://terminology.hl7.org/CodeSystem/sequence-phase-relationship-cs Cis}\">Cis</span></td><td>Final</td><td>2019-03-05</td><td>2019-03-05 16:04:44+0000</td></tr></table></div>"^^rdf:XMLLiteral ]
      ] ; #
      fhir:status [ fhir:v "final"] ; #
      fhir:category ( [
        ( fhir:coding [
    fhir:system [
    fhir:v "http://terminology.hl7.org/CodeSystem/v2-0074"^^xsd:anyURI ;
    fhir:l <http://terminology.hl7.org/CodeSystem/v2-0074>       ] ;
    fhir:code [ fhir:v "GE" ]     ] )
      ] ) ; #
      fhir:code [
        ( fhir:coding [
    a loinc:51969-4 ;
    fhir:system [
    fhir:v "http://loinc.org"^^xsd:anyURI ;
    fhir:l <http://loinc.org>       ] ;
    fhir:code [ fhir:v "51969-4" ]     ] )
      ] ; #
      fhir:result ( [
    fhir:l <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfe60> ;
    fhir:reference [ fhir:v "urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfe60" ]
      ] [
    fhir:l <urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe01> ;
    fhir:reference [ fhir:v "urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe01" ]
      ] [
    fhir:l <urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe02> ;
    fhir:reference [ fhir:v "urn:uuid:20ac0aeb-6bd4-4e92-a891-d44a807bfe02" ]
      ] ) . #

    <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeab> a fhir:Organization ;
      fhir:id [ fhir:v "performingLab"] ; #
      fhir:text [
    fhir:status [ fhir:v "generated" ] ;
    fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Organization_performingLab\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Organization performingLab</b></p><a name=\"performingLab\"> </a><a name=\"hcperformingLab\"> </a><p><b>name</b>: aTypingLab Inc</p><p><b>alias</b>: aTL</p><p><b>telecom</b>: ph: 1-800-555-1234(Work)</p><p><b>address</b>: 123 Main St, Sometown, ND 99999(work)</p></div>"^^rdf:XMLLiteral ]
      ] ; #
      fhir:name [ fhir:v "aTypingLab Inc"] ; #
      fhir:alias ( [ fhir:v "aTL"] ) ; #
      fhir:telecom ( [
    fhir:system [ fhir:v "phone" ] ;
    fhir:value [ fhir:v "1-800-555-1234" ] ;
    fhir:use [ fhir:v "work" ] ;
    fhir:rank [ fhir:v "1"^^xsd:positiveInteger ]
      ] ) ; #
      fhir:address ( [
    fhir:use [ fhir:v "work" ] ;
    fhir:type [ fhir:v "both" ] ;
    fhir:text [ fhir:v "123 Main St, Sometown, ND 99999" ] ;
        ( fhir:line [ fhir:v "123 Main St" ] ) ;
    fhir:city [ fhir:v "Sometown" ] ;
    fhir:state [ fhir:v "ND" ] ;
    fhir:postalCode [ fhir:v "99999" ] ;
    fhir:country [ fhir:v "USA" ]
      ] ) . #

    <urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac> a fhir:Patient ;
      fhir:id [ fhir:v "patient"] ; #
      fhir:text [
    fhir:status [ fhir:v "generated" ] ;
    fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><a name=\"Patient_patient\"> </a><p class=\"res-header-id\"><b>Generated Narrative: Patient patient</b></p><a name=\"patient\"> </a><a name=\"hcpatient\"> </a><p style=\"border: 1px #661aff solid; background-color: #e6e6ff; padding: 10px;\">John Storm(official) Male, DoB: 1986-12-31</p><hr/><table class=\"grid\"><tr><td style=\"background-color: #f3f5da\" title=\"Ways to contact the Patient\">Contact Detail</td><td colspan=\"3\"><ul><li>ph: 1-800-555-1234(Work)</li><li>123 Main St, Sometown, ND 99999(work)</li></ul></td></tr></table></div>"^^rdf:XMLLiteral ]
      ] ; #
      fhir:name ( [
    fhir:use [ fhir:v "official" ] ;
    fhir:text [ fhir:v "John Storm" ] ;
    fhir:family [ fhir:v "Storm" ] ;
        ( fhir:given [ fhir:v "John" ] )
      ] [
    fhir:use [ fhir:v "nickname" ] ;
    fhir:text [ fhir:v "Johnny Storm" ] ;
    fhir:family [ fhir:v "Storm" ] ;
        ( fhir:given [ fhir:v "Johnny" ] )
      ] [
    fhir:use [ fhir:v "nickname" ] ;
    fhir:text [ fhir:v "The Human Torch" ]
      ] ) ; #
      fhir:telecom ( [
    fhir:system [ fhir:v "phone" ] ;
    fhir:value [ fhir:v "1-800-555-1234" ] ;
    fhir:use [ fhir:v "work" ] ;
    fhir:rank [ fhir:v "1"^^xsd:positiveInteger ]
      ] ) ; #
      fhir:gender [ fhir:v "male"] ; #
      fhir:birthDate [ fhir:v "1986-12-31"^^xsd:date] ; #
      fhir:address ( [
    fhir:use [ fhir:v "work" ] ;
    fhir:type [ fhir:v "both" ] ;
    fhir:text [ fhir:v "123 Main St, Sometown, ND 99999" ] ;
        ( fhir:line [ fhir:v "123 Main St" ] ) ;
    fhir:city [ fhir:v "Sometown" ] ;
    fhir:state [ fhir:v "ND" ] ;
    fhir:postalCode [ fhir:v "99999" ] ;
    fhir:country [ fhir:v "USA" ]
      ] ) . #