Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

## : bundle-sequence-phase-relation-CYP2C19 - XML Representation

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            <meta>
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              <div xmlns="http://www.w3.org/1999/xhtml"><a name="Observation_dv-5c7e9e1ca82e4"> </a><p class="res-header-id"><b>Generated Narrative: Observation dv-5c7e9e1ca82e4</b></p><a name="dv-5c7e9e1ca82e4"> </a><a name="hcdv-5c7e9e1ca82e4"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-variant.html">Variant</a></p></div><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></p><p><b>subject</b>: <a href="Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfeac">John Storm(official) Male, DoB: 1986-12-31</a></p><p><b>effective</b>: 2019-03-05</p><p><b>issued</b>: 2019-03-05 16:04:44+0000</p><p><b>performer</b>: <a href="Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfeab">Organization aTypingLab Inc</a></p><p><b>value</b>: <span title="Codes:{http://loinc.org LA9633-4}">Present</span></p><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://loinc.org 62374-4}">Human reference sequence assembly version</span></p><p><b>value</b>: <span title="Codes:{http://loinc.org LA14029-5}">GRCh37</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://loinc.org 48013-7}">Genomic reference sequence ID</span></p><p><b>value</b>: <span title="Codes:{http://www.ncbi.nlm.nih.gov/refseq NC_000010.10}">NC_000010.10</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://loinc.org 53034-5}">Allelic state</span></p><p><b>value</b>: <span title="Codes:{http://loinc.org LA6706-1}">heterozygous</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://loinc.org 69547-8}">Ref nucleotide</span></p><p><b>value</b>: C</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://loinc.org 69551-0}">Alt allele</span></p><p><b>value</b>: G</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://loinc.org 92822-6}">Genomic coord system</span></p><p><b>value</b>: <span title="Codes:{http://loinc.org LA30102-0}">1-based character counting</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: <span title="Codes:{http://loinc.org 81254-5}">Genomic allele start-end</span></p><p><b>value</b>: 96527722-?</p></blockquote></div>
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              <status value="generated"/>
              <div xmlns="http://www.w3.org/1999/xhtml"><a name="Observation_sid-5c7e9e1ca8a29"> </a><p class="res-header-id"><b>Generated Narrative: Observation sid-5c7e9e1ca8a29</b></p><a name="sid-5c7e9e1ca8a29"> </a><a name="hcsid-5c7e9e1ca8a29"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-sequence-phase-relationship.html">Sequence Phase Relationship</a></p></div><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 82120-7}">Allelic phase</span></p><p><b>subject</b>: <a href="Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfeac">John Storm(official) Male, DoB: 1986-12-31</a></p><p><b>effective</b>: 2019-03-05</p><p><b>issued</b>: 2019-03-05 16:04:44+0000</p><p><b>performer</b>: <a href="Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfeab">Organization aTypingLab Inc</a></p><p><b>value</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/sequence-phase-relationship-cs Cis}">Cis</span></p><p><b>derivedFrom</b>: </p><ul><li><a href="Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfe60">Observation Genetic variant assessment</a></li><li><a href="Bundle-bundle-CYP2C19.html#urn-uuid-20ac0aeb-6bd4-4e92-a891-d44a807bfe01">Observation Genetic variant assessment</a></li></ul></div>
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              <div xmlns="http://www.w3.org/1999/xhtml"><a name="DiagnosticReport_sequence-phase-relation-CYP2C19"> </a><p class="res-header-id"><b>Generated Narrative: DiagnosticReport sequence-phase-relation-CYP2C19</b></p><a name="sequence-phase-relation-CYP2C19"> </a><a name="hcsequence-phase-relation-CYP2C19"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-genomic-report.html">Genomic Report</a></p></div><h2><span title="Codes:{http://loinc.org 51969-4}">Genetic analysis report</span> (<span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span>) </h2><table class="grid"/><p><b>Report Details</b></p><table class="grid"><tr><td><b>Code</b></td><td><b>Value</b></td><td><b>Flags</b></td><td><b>When For</b></td><td><b>Reported</b></td></tr><tr><td><a href="Bundle-bundle-CYP2C19.html#urn-uuid-19ac0aeb-6bd4-4e92-a891-d44a807bfe60"><span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></a></td><td><span title="Codes:{http://loinc.org LA9633-4}">Present</span></td><td>Final</td><td>2019-03-05</td><td>2019-03-05 16:04:44+0000</td></tr><tr><td><a href="Bundle-bundle-CYP2C19.html#urn-uuid-20ac0aeb-6bd4-4e92-a891-d44a807bfe01"><span title="Codes:{http://loinc.org 69548-6}">Genetic variant assessment</span></a></td><td><span title="Codes:{http://loinc.org LA9633-4}">Present</span></td><td>Final</td><td>2019-03-05</td><td>2019-03-05 16:04:44+0000</td></tr><tr><td><a href="Bundle-bundle-sequence-phase-relation-CYP2C19.html#urn-uuid-20ac0aeb-6bd4-4e92-a891-d44a807bfe02"><span title="Codes:{http://loinc.org 82120-7}">Allelic phase</span></a></td><td><span title="Codes:{http://terminology.hl7.org/CodeSystem/sequence-phase-relationship-cs Cis}">Cis</span></td><td>Final</td><td>2019-03-05</td><td>2019-03-05 16:04:44+0000</td></tr></table></div>
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              <div xmlns="http://www.w3.org/1999/xhtml"><a name="Organization_performingLab"> </a><p class="res-header-id"><b>Generated Narrative: Organization performingLab</b></p><a name="performingLab"> </a><a name="hcperformingLab"> </a><p><b>name</b>: aTypingLab Inc</p><p><b>alias</b>: aTL</p><p><b>telecom</b>: ph: 1-800-555-1234(Work)</p><p><b>address</b>: 123 Main St, Sometown, ND 99999(work)</p></div>
            </text>
            <name value="aTypingLab Inc"/>
            <alias value="aTL"/>
            <telecom>
              <system value="phone"/>
              <value value="1-800-555-1234"/>
              <use value="work"/>
              <rank value="1"/>
            </telecom>
            <address>
              <use value="work"/>
              <type value="both"/>
              <text value="123 Main St, Sometown, ND 99999"/>
              <line value="123 Main St"/>
              <city value="Sometown"/>
              <state value="ND"/>
              <postalCode value="99999"/>
              <country value="USA"/>
            </address>
          </Organization>
        </resource>
        <request>
          <method value="POST"/>
          <url value="Organization"/>
        </request>
      </entry>
      <entry>
        <fullUrl value="urn:uuid:19ac0aeb-6bd4-4e92-a891-d44a807bfeac"/>
        <resource>
          <Patient>
            <id value="patient"/>
            <text>
              <status value="generated"/>
              <div xmlns="http://www.w3.org/1999/xhtml"><a name="Patient_patient"> </a><p class="res-header-id"><b>Generated Narrative: Patient patient</b></p><a name="patient"> </a><a name="hcpatient"> </a><p style="border: 1px #661aff solid; background-color: #e6e6ff; padding: 10px;">John Storm(official) Male, DoB: 1986-12-31</p><hr/><table class="grid"><tr><td style="background-color: #f3f5da" title="Ways to contact the Patient">Contact Detail</td><td colspan="3"><ul><li>ph: 1-800-555-1234(Work)</li><li>123 Main St, Sometown, ND 99999(work)</li></ul></td></tr></table></div>
            </text>
            <name>
              <use value="official"/>
              <text value="John Storm"/>
              <family value="Storm"/>
              <given value="John"/>
            </name>
            <name>
              <use value="nickname"/>
              <text value="Johnny Storm"/>
              <family value="Storm"/>
              <given value="Johnny"/>
            </name>
            <name>
              <use value="nickname"/>
              <text value="The Human Torch"/>
            </name>
            <telecom>
              <system value="phone"/>
              <value value="1-800-555-1234"/>
              <use value="work"/>
              <rank value="1"/>
            </telecom>
            <gender value="male"/>
            <birthDate value="1986-12-31"/>
            <address>
              <use value="work"/>
              <type value="both"/>
              <text value="123 Main St, Sometown, ND 99999"/>
              <line value="123 Main St"/>
              <city value="Sometown"/>
              <state value="ND"/>
              <postalCode value="99999"/>
              <country value="USA"/>
            </address>
          </Patient>
        </resource>
        <request>
          <method value="POST"/>
          <url value="Patient"/>
        </request>
      </entry>
    </Bundle>