Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

## : lungMass - JSON Representation

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    {
      "resourceType" : "Procedure",
      "id" : "lungMass",
      "meta" : {
        "profile" : [
          🔗 "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study"
        ]
      },
      "text" : {
        "status" : "extensions",
        "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Procedure lungMass</b></p><a name=\"lungMass\"> </a><a name=\"hclungMass\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genomic-study.html\">Genomic Study</a></p></div><p><b>Genomic Study Analysis Extension</b>: <a href=\"Procedure-lungMass-analysis1.html\">Procedure: extension = Sequence analysis of the entire coding region,Somatic,SNV,MNV,delins,GRCh38,-&gt;Specimen: identifier = http://example.org/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,-&gt;John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117\u00a0(use:\u00a0temp,\u00a0period:\u00a02021-01-01 --&gt; (ongoing))),,,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.</a></p><p><b>Genomic Study Analysis Extension</b>: <a href=\"Procedure-lungMass-analysis2.html\">Procedure: extension = Deletion/duplication analysis,Somatic,CNV,GRCh38,-&gt;Specimen: identifier = http://example.org/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,-&gt;John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117\u00a0(use:\u00a0temp,\u00a0period:\u00a02021-01-01 --&gt; (ongoing))),,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.</a></p><p><b>basedOn</b>: <a href=\"ServiceRequest-genomicServiceRequest.html\">ServiceRequest Molecular genetic test (procedure)</a></p><p><b>status</b>: Completed</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span></p><p><b>code</b>: <span title=\"Codes:\">Solid tumor whole exome sequencing panel</span></p><p><b>subject</b>: <a href=\"Patient-genomicPatient.html\">John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117\u00a0(use:\u00a0temp,\u00a0period:\u00a02021-01-01 --&gt; (ongoing)))</a></p><p><b>performed</b>: 2019-03-01</p><p><b>asserter</b>: <a href=\"Practitioner-practitioner02.html\">Practitioner Jane Doel </a></p><p><b>reasonCode</b>: <span title=\"Codes:{http://snomed.info/sct 309529002}\">Lung mass (finding)</span></p><p><b>note</b>: </p><blockquote><div><p>For technical reasons, PIK3CB was deemed uncallable.</p>\n</div></blockquote></div>"
      },
      "extension" : [
        {
          "url" : "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext",
          "valueReference" : {
            🔗 "reference" : "Procedure/lungMass-analysis1"
          }
        },
        {
          "url" : "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext",
          "valueReference" : {
            🔗 "reference" : "Procedure/lungMass-analysis2"
          }
        }
      ],
      "basedOn" : [
        {
          🔗 "reference" : "ServiceRequest/genomicServiceRequest"
        }
      ],
      "status" : "completed",
      "category" : {
        "coding" : [
          {
            "system" : "http://terminology.hl7.org/CodeSystem/observation-category",
            "code" : "laboratory"
          }
        ]
      },
      "code" : {
        "text" : "Solid tumor whole exome sequencing panel"
      },
      "subject" : {
        🔗 "reference" : "Patient/genomicPatient"
      },
      "performedDateTime" : "2019-03-01",
      "asserter" : {
        🔗 "reference" : "Practitioner/practitioner02"
      },
      "reasonCode" : [
        {
          "coding" : [
            {
              "system" : "http://snomed.info/sct",
              "code" : "309529002",
              "display" : "Lung mass (finding)"
            }
          ]
        }
      ],
      "note" : [
        {
          "text" : "For technical reasons, PIK3CB was deemed uncallable."
        }
      ]
    }