Genomics Reporting Implementation Guide
4.0.0-cibuild - CI Build International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

ValueSet: Molecular Biomarker Codes

Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-biomarker-code-vs Version: 4.0.0-cibuild
Standards status: Trial-use Maturity Level: 2 Computable Name: MolecularBiomarkerCodeVS

Copyright/Legal: This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc. This value set includes content from SNOMED CT, which is copyright © 2002+ International Health Terminology Standards Development Organisation (IHTSDO), and distributed by agreement between IHTSDO and HL7. Implementer use of SNOMED CT is not covered by this agreement.

Value Set for terms that can be used as Biomarkers.

References

Logical Definition (CLD)

This value set includes codes based on the following rules:

  • Include these codes as defined in http://loinc.org version Not Stated (use latest from terminology server)
    CodeDisplay
    85337-4Estrogen receptor Ag [Presence] in Breast cancer specimen by Immune stain
    72382-5HER2 [Units/volume] in Tissue by Immunoassay
    77637-7HLA-A and B and C (class I) IgG panel [Identifier] - Serum or Plasma by Immunoassay
    40557-1Progesterone receptor Ag [Presence] in Tissue by Immune stain
    85147-7PD-L1 by clone 22C3 in Tissue by Immune stain Report
    59025-7Neutrophil Ab [Units/volume] in Serum by Flow cytometry (FC)
    59003-4Lactoferrin Ab [Units/volume] in Serum by Immunoassay
    10495-0Insulin Ag [Presence] in Tissue by Immune stain
    16550-6Carbohydrates [Identifier] in Urine
    2569-2Lipids [Mass/volume] in Serum
    4551-8Hemoglobin A2/Hemoglobin.total in Blood
    19195-7Prostate specific Ag [Units/volume] in Serum or Plasma
    64083-9MGMT gene methylation score in Tissue by Molecular genetics method
    62862-8Microsatellite instability [Presence] in Tissue by Immune stain
    81704-9Microsatellite instability marker D17S250 in Cancer specimen Qualitative
    94077-5Tumor mutation burden [Interpretation]
  • Include these codes as defined in http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl version Not Stated (use latest from terminology server)
    CodeDisplay
    C120465 Homologous Recombination Repair Deficiency

 

Expansion

No Expansion for this valueset (not supported by Publication Tooling)

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code