bundle-CG-IG-HLA-FullBundle-01
type: Bundle
node role: treeRoot
id:
  v: bundle-CG-IG-HLA-FullBundle-01
type:
  v: transaction
entry:
  request:
    method:
      v: POST
    url:
      v: Patient
      l: Patient
entry:
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      v: POST
    url:
      v: Specimen
      l: Specimen
entry:
  request:
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      v: POST
    url:
      v: Organization
      l: Organization
entry:
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      v: POST
    url:
      v: Organization
      l: Organization
entry:
  request:
    method:
      v: POST
    url:
      v: ServiceRequest
      l: ServiceRequest
entry:
  request:
    method:
      v: POST
    url:
      v: MolecularSequence
      l: MolecularSequence
entry:
  request:
    method:
      v: POST
    url:
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      l: MolecularSequence
entry:
  request:
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      v: POST
    url:
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      l: MolecularSequence
entry:
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      l: MolecularSequence
entry:
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entry:
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      l: Observation
entry:
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      l: MolecularSequence
entry:
  request:
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      v: POST
    url:
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      l: MolecularSequence
entry:
  request:
    method:
      v: POST
    url:
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      l: MolecularSequence
entry:
  request:
    method:
      v: POST
    url:
      v: MolecularSequence
      l: MolecularSequence
entry:
  request:
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      v: POST
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      l: Observation
entry:
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      l: Observation
entry:
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      l: Observation
entry:
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      v: POST
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      l: MolecularSequence
entry:
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      v: POST
    url:
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      l: MolecularSequence
entry:
  request:
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      v: POST
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      l: MolecularSequence
entry:
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      l: MolecularSequence
entry:
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entry:
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      l: Observation
entry:
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    method:
      v: POST
    url:
      v: Observation
      l: Observation
entry:
  request:
    method:
      v: POST
    url:
      v: DiagnosticReport
      l: DiagnosticReport

urn:…
type: Patient
id:
  v: CG-IG-HLA-FullBundle-01-1
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Patient CG-IG-HLA-FullBundle-01-1 John Storm(official) Male, DoB: 1986-12-31 ( Donor Registration Number (use: usual, period: 2012-11-10 --> (ongoing)))
identifier:
  use:
    v: usual
  type:
    coding:
      system:
        v: http://terminology.hl7.org/CodeSystem/v2-0203
        l: v2-0203
      code:
        v: DR
  system:
    v: http://example.org
    l: example.org
  value:
    v: 12345
  period:
    start:
      v: 2012-11-10
  assigner:
    display:
      v: aDonorRegistry
name:
  use:
    v: official
  text:
    v: John Storm
  family:
    v: Storm
  given:
    v: John
name:
  use:
    v: nickname
  text:
    v: Johnny Storm
  family:
    v: Storm
  given:
    v: Johnny
name:
  use:
    v: nickname
  text:
    v: The Human Torch
gender:
  v: male
birth date:
  v: 1986-12-31

urn:…
type: Specimen
id:
  v: CG-IG-HLA-FullBundle-01-2
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Specimen CG-IG-HLA-FullBundle-01-2 identifier: http://example.org/123 accessionIdentifier: http://example.org/456 type: Venous blood specimen subject: John Storm
identifier:
  system:
    v: http://example.org
    l: example.org
  value:
    v: 123
accession identifier:
  system:
    v: http://example.org
    l: example.org
  value:
    v: 456
type:
  coding: http://snomed.info/id/122555007
    system:
      v: http://snomed.info/sct
      l: sct
    code:
      v: 122555007
    display:
      v: Venous blood specimen
subject:
  type:
    v: Patient
    l: Patient
  display:
    v: John Storm

urn:…
type: Organization
id:
  v: CG-IG-HLA-FullBundle-01-3
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Organization CG-IG-HLA-FullBundle-01-3 name: aTypingLab Inc alias: aTL telecom: ph: 1-800-555-1234(Work) address: 123 Main St, Sometown, ND 99999(work)
name:
  v: aTypingLab Inc
alias:
  v: aTL
telecom:
  system:
    v: phone
  value:
    v: 1-800-555-1234
  use:
    v: work
  rank:
    v: 1
address:
  use:
    v: work
  type:
    v: both
  text:
    v: 123 Main St, Sometown, ND 99999
  line:
    v: 123 Main St
  city:
    v: Sometown
  state:
    v: ND
  postal code:
    v: 99999
  country:
    v: USA

urn:…
type: Organization
id:
  v: CG-IG-HLA-FullBundle-01-4
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Organization CG-IG-HLA-FullBundle-01-4 name: aDonorRegistry alias: ADR telecom: ph: 1-800-555-6789(Work) address: 456 Main St, Anytown ND, 00000(work)
name:
  v: aDonorRegistry
alias:
  v: ADR
telecom:
  system:
    v: phone
  value:
    v: 1-800-555-6789
  use:
    v: work
  rank:
    v: 1
address:
  use:
    v: work
  type:
    v: both
  text:
    v: 456 Main St, Anytown ND, 00000
  line:
    v: 456 Main St
  city:
    v: Anytown
  state:
    v: ND
  postal code:
    v: 00000
  country:
    v: USA

urn:…
type: ServiceRequest
id:
  v: CG-IG-HLA-FullBundle-01-5
text:
  status:
    v: generated
  div:
    v: Generated Narrative: ServiceRequest CG-IG-HLA-FullBundle-01-5 status: Completed intent: Order code: HLA-A+B+C (class I) [Type] subject: John Storm authoredOn: 2016-11-15 requester: aDonorRegistry performer: aTypingLab, Inc reasonCode: tissue typing for donor registry
status:
  v: completed
intent:
  v: order
code:
  coding: https://loinc.org/rdf/13303-3
    system:
      v: http://loinc.org
      l: loinc.org
    code:
      v: 13303-3
    display:
      v: HLA-A+B+C (class I) [Type]
subject:
  type:
    v: Patient
    l: Patient
  display:
    v: John Storm
authored on:
  v: 2016-11-15
requester:
  type:
    v: Organization
    l: Organization
  display:
    v: aDonorRegistry
performer:
  type:
    v: Organization
    l: Organization
  display:
    v: aTypingLab, Inc
reason code:
  text:
    v: tissue typing for donor registry

urn:…
type: MolecularSequence
id:
  v: CG-IG-HLA-FullBundle-01-6
text:
  status:
    v: generated
  div:
    v: Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-6 type: DNA Sequence coordinateSystem: 0 ReferenceSeqs - ReferenceSeqId WindowStart WindowEnd * HLA-A*01:01:01:01 503 773 observedSeq: GCTCCCACTCCATGAGGTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAAGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATATGAAGGCCCACTCACAGACTGACCGAGCGAACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACG
type:
  v: dna
coordinate system:
  v: 0
reference seq:
  reference seq id:
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
      code:
        v: HLA00001
    text:
      v: HLA-A*01:01:01:01
  window start:
    v: 503
  window end:
    v: 773
observed seq:
  v: GCTCCCACTCCATGAGGTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAAGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATATGAAGGCCCACTCACAGACTGACCGAGCGAACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACG

urn:…
type: MolecularSequence
id:
  v: CG-IG-HLA-FullBundle-01-7
text:
  status:
    v: generated
  div:
    v: Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-7 type: DNA Sequence coordinateSystem: 0 ReferenceSeqs - ReferenceSeqId WindowStart WindowEnd * HLA-A*01:01:01:01 1014 1290 observedSeq: GTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGCCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGTCCATGCGGCGGAGCAGCGGAGAGTCTACCTGGAGGGCCGGTGCGTGGACGGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGG
type:
  v: dna
coordinate system:
  v: 0
reference seq:
  reference seq id:
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
      code:
        v: HLA00001
    text:
      v: HLA-A*01:01:01:01
  window start:
    v: 1014
  window end:
    v: 1290
observed seq:
  v: GTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGCCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGTCCATGCGGCGGAGCAGCGGAGAGTCTACCTGGAGGGCCGGTGCGTGGACGGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGG

urn:…
type: MolecularSequence
id:
  v: CG-IG-HLA-FullBundle-01-8
text:
  status:
    v: generated
  div:
    v: Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-8 type: DNA Sequence coordinateSystem: 0 ReferenceSeqs - ReferenceSeqId WindowStart WindowEnd * HLA-A*01:02 503 773 observedSeq: GCTCCCACTCCATGAGGTATTTCTCCACATCCGTGTCCCGGCCCGGCAGTGGAGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAAGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATATGAAGGCCCACTCACAGACTGACCGAGCGAACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACG
type:
  v: dna
coordinate system:
  v: 0
reference seq:
  reference seq id:
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
      code:
        v: HLA00002
    text:
      v: HLA-A*01:02
  window start:
    v: 503
  window end:
    v: 773
observed seq:
  v: GCTCCCACTCCATGAGGTATTTCTCCACATCCGTGTCCCGGCCCGGCAGTGGAGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAAGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATATGAAGGCCCACTCACAGACTGACCGAGCGAACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACG

urn:…
type: MolecularSequence
id:
  v: CG-IG-HLA-FullBundle-01-9
text:
  status:
    v: generated
  div:
    v: Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-9 type: DNA Sequence coordinateSystem: 0 ReferenceSeqs - ReferenceSeqId WindowStart WindowEnd * HLA-A*01:02 1014 1290 observedSeq: GTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGCCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGTCCATGCGGCGGAGCAGCGGAGAGTCTACCTGGAGGGCCGGTGCGTGGACGGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGG
type:
  v: dna
coordinate system:
  v: 0
reference seq:
  reference seq id:
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
      code:
        v: HLA00002
    text:
      v: HLA-A*01:02
  window start:
    v: 1014
  window end:
    v: 1290
observed seq:
  v: GTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGCCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGTCCATGCGGCGGAGCAGCGGAGAGTCTACCTGGAGGGCCGGTGCGTGGACGGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGG

urn:…
type: Observation
id:
  v: CG-IG-HLA-FullBundle-01-10
meta:
  profile:
    v: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
    l: haplotype
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Observation CG-IG-HLA-FullBundle-01-10 Profile: Haplotype status: Final category: Laboratory, Genetics code: Haplotype name subject: John Storm effective: 2016-12-15 performer: aTypingLab, Inc value: HLA-A*01:01:01G method: NGS based Class I HLA-A, -B, -C genotyping specimen: buccal swab from John Storm derivedFrom: HLA-A*01:01:01:01, exon 2 HLA-A*01:01:01:01, exon 3 Components - Code Value[x] * Gene studied [ID] HLA-A
status:
  v: final
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/observation-category
      l: observation-category
    code:
      v: laboratory
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/v2-0074
      l: v2-0074
    code:
      v: GE
code:
  coding: https://loinc.org/rdf/84414-2
    system:
      v: http://loinc.org
      l: loinc.org
    code:
      v: 84414-2
    display:
      v: Haplotype name
subject:
  type:
    v: Patient
    l: Patient
  display:
    v: John Storm
effective: DateTime
  v: 2016-12-15
performer:
  display:
    v: aTypingLab, Inc
value: CodeableConcept
  coding:
    system:
      v: http://www.ebi.ac.uk/ipd/imgt/hla
      l: hla
    version:
      v: 3.23
    code:
      v: HLA-A*01:01:01G
    display:
      v: HLA-A*01:01:01G
method:
  coding:
    system:
      v: https://www.ncbi.nlm.nih.gov/gtr
      l: gtr
    code:
      v: GTR000000000.0
  text:
    v: NGS based Class I HLA-A, -B, -C genotyping
specimen:
  display:
    v: buccal swab from John Storm
derived from:
  type:
    v: MolecularSequence
    l: MolecularSequence
  display:
    v: HLA-A*01:01:01:01, exon 2
derived from:
  type:
    v: MolecularSequence
    l: MolecularSequence
  display:
    v: HLA-A*01:01:01:01, exon 3
component:
  code:
    coding: https://loinc.org/rdf/48018-6
      system:
        v: http://loinc.org
        l: loinc.org
      code:
        v: 48018-6
      display:
        v: Gene studied [ID]
  value: CodeableConcept
    coding:
      system:
        v: http://www.genenames.org
        l: www.genenames.org
      code:
        v: HGNC:4931
      display:
        v: HLA-A

urn:…
type: Observation
id:
  v: CG-IG-HLA-FullBundle-01-11
meta:
  profile:
    v: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
    l: haplotype
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Observation CG-IG-HLA-FullBundle-01-11 Profile: Haplotype status: Final category: Laboratory, Genetics code: Haplotype name subject: John Storm effective: 2016-12-15 performer: aTypingLab, Inc value: HLA-A*01:02 method: NGS based Class I HLA-A, -B, -C genotyping specimen: buccal swab from John Storm derivedFrom: HLA-A*01:02, exon 2 HLA-A*01:02, exon 3 Components - Code Value[x] * Gene studied [ID] HLA-A
status:
  v: final
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/observation-category
      l: observation-category
    code:
      v: laboratory
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/v2-0074
      l: v2-0074
    code:
      v: GE
code:
  coding: https://loinc.org/rdf/84414-2
    system:
      v: http://loinc.org
      l: loinc.org
    code:
      v: 84414-2
    display:
      v: Haplotype name
subject:
  type:
    v: Patient
    l: Patient
  display:
    v: John Storm
effective: DateTime
  v: 2016-12-15
performer:
  display:
    v: aTypingLab, Inc
value: CodeableConcept
  coding:
    system:
      v: http://www.ebi.ac.uk/ipd/imgt/hla
      l: hla
    version:
      v: 3.23
    code:
      v: HLA-A*01:02
    display:
      v: HLA-A*01:02
method:
  coding:
    system:
      v: https://www.ncbi.nlm.nih.gov/gtr
      l: gtr
    code:
      v: GTR000000000.0
  text:
    v: NGS based Class I HLA-A, -B, -C genotyping
specimen:
  display:
    v: buccal swab from John Storm
derived from:
  type:
    v: MolecularSequence
    l: MolecularSequence
  display:
    v: HLA-A*01:02, exon 2
derived from:
  type:
    v: MolecularSequence
    l: MolecularSequence
  display:
    v: HLA-A*01:02, exon 3
component:
  code:
    coding: https://loinc.org/rdf/48018-6
      system:
        v: http://loinc.org
        l: loinc.org
      code:
        v: 48018-6
      display:
        v: Gene studied [ID]
  value: CodeableConcept
    coding:
      system:
        v: http://www.genenames.org
        l: www.genenames.org
      code:
        v: HGNC:4931
      display:
        v: HLA-A

urn:…
type: Observation
id:
  v: CG-IG-HLA-FullBundle-01-12
meta:
  profile:
    v: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype
    l: genotype
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Observation CG-IG-HLA-FullBundle-01-12 Profile: Genotype basedOn: Class I HLA genotyping for John Storm status: Final category: Laboratory, Genetics code: Genotype display name subject: John Storm effective: 2016-12-15 performer: aTypingLab, Inc value: hla#3.23.0#HLA-A:01:01G+HLA-A*01:02 method: NGS based Class I HLA-A, -B, -C genotyping specimen: buccal swab from John Storm derivedFrom: HLA-A*01:01:01G, exons 2 and 3 HLA-A*01:02, exons 2 and 3 Components - Code Value[x] * Gene studied [ID] HLA-A
based on:
  type:
    v: ServiceRequest
    l: ServiceRequest
  display:
    v: Class I HLA genotyping for John Storm
status:
  v: final
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/observation-category
      l: observation-category
    code:
      v: laboratory
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/v2-0074
      l: v2-0074
    code:
      v: GE
code:
  coding: https://loinc.org/rdf/84413-4
    system:
      v: http://loinc.org
      l: loinc.org
    code:
      v: 84413-4
    display:
      v: Genotype display name
subject:
  type:
    v: Patient
    l: Patient
  display:
    v: John Storm
effective: DateTime
  v: 2016-12-15
performer:
  display:
    v: aTypingLab, Inc
value: CodeableConcept
  coding:
    system:
      v: http://glstring.org
      l: glstring.org
    version:
      v: 1.0
    code:
      v: hla#3.23.0#HLA-A:01:01G+HLA-A*01:02
method:
  coding:
    system:
      v: https://www.ncbi.nlm.nih.gov/gtr
      l: gtr
    code:
      v: GTR000000000.0
  text:
    v: NGS based Class I HLA-A, -B, -C genotyping
specimen:
  display:
    v: buccal swab from John Storm
derived from:
  type:
    v: Observation
    l: Observation
  display:
    v: HLA-A*01:01:01G, exons 2 and 3
derived from:
  type:
    v: Observation
    l: Observation
  display:
    v: HLA-A*01:02, exons 2 and 3
component:
  code:
    coding: https://loinc.org/rdf/48018-6
      system:
        v: http://loinc.org
        l: loinc.org
      code:
        v: 48018-6
      display:
        v: Gene studied [ID]
  value: CodeableConcept
    coding:
      system:
        v: http://www.genenames.org
        l: www.genenames.org
      code:
        v: HGNC:4931
      display:
        v: HLA-A

urn:…
type: MolecularSequence
id:
  v: CG-IG-HLA-FullBundle-01-13
text:
  status:
    v: generated
  div:
    v: Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-13 type: DNA Sequence coordinateSystem: 0 ReferenceSeqs - ReferenceSeqId WindowStart WindowEnd * HLA-B*15:01:01:01 486 756 observedSeq: GCTCCCACTCCATGAGGTATTTCTACACCGCCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACCCAGTTCGTGAGGTTCGACAGCGACGCCGCGAGTCCGAGGATGGCGCCCCGGGCGCCATGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGATCTCCAAGACCAACACACAGACTTACCGAGAGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG
type:
  v: dna
coordinate system:
  v: 0
reference seq:
  reference seq id:
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
      code:
        v: HLA00162
    text:
      v: HLA-B*15:01:01:01
  window start:
    v: 486
  window end:
    v: 756
observed seq:
  v: GCTCCCACTCCATGAGGTATTTCTACACCGCCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACCCAGTTCGTGAGGTTCGACAGCGACGCCGCGAGTCCGAGGATGGCGCCCCGGGCGCCATGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGATCTCCAAGACCAACACACAGACTTACCGAGAGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG

urn:…
type: MolecularSequence
id:
  v: CG-IG-HLA-FullBundle-01-14
text:
  status:
    v: generated
  div:
    v: Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-14 type: DNA Sequence coordinateSystem: 0 ReferenceSeqs - ReferenceSeqId WindowStart WindowEnd * HLA-B*15:01:01:01 1001 1277 observedSeq: GGTCTCACACCCTCCAGAGGATGTACGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGCATGACCAGTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGTGGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG
type:
  v: dna
coordinate system:
  v: 0
reference seq:
  reference seq id:
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
      code:
        v: HLA00162
    text:
      v: HLA-B*15:01:01:01
  window start:
    v: 1001
  window end:
    v: 1277
observed seq:
  v: GGTCTCACACCCTCCAGAGGATGTACGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGCATGACCAGTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGTGGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG

urn:…
type: MolecularSequence
id:
  v: CG-IG-HLA-FullBundle-01-15
text:
  status:
    v: generated
  div:
    v: Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-15 type: DNA Sequence coordinateSystem: 0 ReferenceSeqs - ReferenceSeqId WindowStart WindowEnd * HLA-B*57:01:01 485 755 observedSeq: GCTCCCACTCCATGAGGTATTTCTACACCGCCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACCCAGTTCGTGAGGTTCGACAGCGACGCCGCGAGTCCGAGGATGGCGCCCCGGGCGCCATGGATAGAGCAGGAGGGGCCGGAGTATTGGGACGGGGAGACACGGAACATGAAGGCCTCCGCGCAGACTTACCGAGAGAACCTGCGGATCGCGCTCCGCTACTACAACCAGAGCGAGGCCG
type:
  v: dna
coordinate system:
  v: 0
reference seq:
  reference seq id:
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
      code:
        v: HLA00381
    text:
      v: HLA-B*57:01:01
  window start:
    v: 485
  window end:
    v: 755
observed seq:
  v: GCTCCCACTCCATGAGGTATTTCTACACCGCCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACCCAGTTCGTGAGGTTCGACAGCGACGCCGCGAGTCCGAGGATGGCGCCCCGGGCGCCATGGATAGAGCAGGAGGGGCCGGAGTATTGGGACGGGGAGACACGGAACATGAAGGCCTCCGCGCAGACTTACCGAGAGAACCTGCGGATCGCGCTCCGCTACTACAACCAGAGCGAGGCCG

urn:…
type: MolecularSequence
id:
  v: CG-IG-HLA-FullBundle-01-16
text:
  status:
    v: generated
  div:
    v: Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-16 type: DNA Sequence coordinateSystem: 0 ReferenceSeqs - ReferenceSeqId WindowStart WindowEnd * HLA-B*57:01:01 1001 1277 observedSeq: GGTCTCACATCATCCAGGTGATGTATGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGCATGACCAGTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGTGGCGGAGCAGCTGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG
type:
  v: dna
coordinate system:
  v: 0
reference seq:
  reference seq id:
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
      code:
        v: HLA00381
    text:
      v: HLA-B*57:01:01
  window start:
    v: 1001
  window end:
    v: 1277
observed seq:
  v: GGTCTCACATCATCCAGGTGATGTATGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGCATGACCAGTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGTGGCGGAGCAGCTGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG

urn:…
type: Observation
id:
  v: CG-IG-HLA-FullBundle-01-17
meta:
  profile:
    v: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
    l: haplotype
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Observation CG-IG-HLA-FullBundle-01-17 Profile: Haplotype status: Final category: Laboratory, Genetics code: Haplotype name subject: John Storm effective: 2016-12-15 performer: aTypingLab, Inc value: HLA-B*15:01:01G method: NGS based Class I HLA-A, -B, -C genotyping specimen: buccal swab from John Storm derivedFrom: HLA-B*15:01:01:01, exon 2 HLA-B*15:01:01:01, exon 3 Components - Code Value[x] * Gene studied [ID] HLA-B
status:
  v: final
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/observation-category
      l: observation-category
    code:
      v: laboratory
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/v2-0074
      l: v2-0074
    code:
      v: GE
code:
  coding: https://loinc.org/rdf/84414-2
    system:
      v: http://loinc.org
      l: loinc.org
    code:
      v: 84414-2
    display:
      v: Haplotype name
subject:
  type:
    v: Patient
    l: Patient
  display:
    v: John Storm
effective: DateTime
  v: 2016-12-15
performer:
  display:
    v: aTypingLab, Inc
value: CodeableConcept
  coding:
    system:
      v: http://www.ebi.ac.uk/ipd/imgt/hla
      l: hla
    version:
      v: 3.23
    code:
      v: HGG00041
    display:
      v: HLA-B*15:01:01G
method:
  coding:
    system:
      v: https://www.ncbi.nlm.nih.gov/gtr
      l: gtr
    code:
      v: GTR000000000.0
  text:
    v: NGS based Class I HLA-A, -B, -C genotyping
specimen:
  display:
    v: buccal swab from John Storm
derived from:
  type:
    v: MolecularSequence
    l: MolecularSequence
  display:
    v: HLA-B*15:01:01:01, exon 2
derived from:
  type:
    v: MolecularSequence
    l: MolecularSequence
  display:
    v: HLA-B*15:01:01:01, exon 3
component:
  code:
    coding: https://loinc.org/rdf/48018-6
      system:
        v: http://loinc.org
        l: loinc.org
      code:
        v: 48018-6
      display:
        v: Gene studied [ID]
  value: CodeableConcept
    coding:
      system:
        v: http://www.genenames.org
        l: www.genenames.org
      code:
        v: HGNC:4932
      display:
        v: HLA-B

urn:…
type: Observation
id:
  v: CG-IG-HLA-FullBundle-01-18
meta:
  profile:
    v: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
    l: haplotype
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Observation CG-IG-HLA-FullBundle-01-18 Profile: Haplotype status: Final category: Laboratory, Genetics code: Haplotype name subject: John Storm effective: 2016-12-15 performer: aTypingLab, Inc value: HLA-B*57:01:01G method: NGS based Class I HLA-A, -B, -C genotyping specimen: buccal swab from John Storm derivedFrom: HLA-B*57:01:01, exon 2 HLA-B*57:01:01, exon 3 Components - Code Value[x] * Gene studied [ID] HLA-B
status:
  v: final
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/observation-category
      l: observation-category
    code:
      v: laboratory
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/v2-0074
      l: v2-0074
    code:
      v: GE
code:
  coding: https://loinc.org/rdf/84414-2
    system:
      v: http://loinc.org
      l: loinc.org
    code:
      v: 84414-2
    display:
      v: Haplotype name
subject:
  type:
    v: Patient
    l: Patient
  display:
    v: John Storm
effective: DateTime
  v: 2016-12-15
performer:
  display:
    v: aTypingLab, Inc
value: CodeableConcept
  coding:
    system:
      v: http://www.ebi.ac.uk/ipd/imgt/hla
      l: hla
    version:
      v: 3.23
    code:
      v: HLA-B*57:01:01G
    display:
      v: HLA-B*57:01:01G
method:
  coding:
    system:
      v: https://www.ncbi.nlm.nih.gov/gtr
      l: gtr
    code:
      v: GTR000000000.0
  text:
    v: NGS based Class I HLA-A, -B, -C genotyping
specimen:
  display:
    v: buccal swab from John Storm
derived from:
  type:
    v: MolecularSequence
    l: MolecularSequence
  display:
    v: HLA-B*57:01:01, exon 2
derived from:
  type:
    v: MolecularSequence
    l: MolecularSequence
  display:
    v: HLA-B*57:01:01, exon 3
component:
  code:
    coding: https://loinc.org/rdf/48018-6
      system:
        v: http://loinc.org
        l: loinc.org
      code:
        v: 48018-6
      display:
        v: Gene studied [ID]
  value: CodeableConcept
    coding:
      system:
        v: http://www.genenames.org
        l: www.genenames.org
      code:
        v: HGNC:4932
      display:
        v: HLA-B

urn:…
type: Observation
id:
  v: CG-IG-HLA-FullBundle-01-19
meta:
  profile:
    v: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype
    l: genotype
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Observation CG-IG-HLA-FullBundle-01-19 Profile: Genotype basedOn: Class I HLA genotyping for John Storm status: Final category: Laboratory, Genetics code: Genotype display name subject: John Storm effective: 2016-12-15 performer: aTypingLab, Inc value: hla#3.23.0#HLA-B*15:01:01G+HLA-B*57:01:01G method: NGS based Class I HLA-A, -B, -C genotyping specimen: buccal swab from John Storm derivedFrom: HLA-B*15:01:01G, exons 2 and 3 HLA-B*57:01:01G, exons 2 and 3 Components - Code Value[x] * Gene studied [ID] HLA-B
based on:
  type:
    v: ServiceRequest
    l: ServiceRequest
  display:
    v: Class I HLA genotyping for John Storm
status:
  v: final
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/observation-category
      l: observation-category
    code:
      v: laboratory
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/v2-0074
      l: v2-0074
    code:
      v: GE
code:
  coding: https://loinc.org/rdf/84413-4
    system:
      v: http://loinc.org
      l: loinc.org
    code:
      v: 84413-4
    display:
      v: Genotype display name
subject:
  type:
    v: Patient
    l: Patient
  display:
    v: John Storm
effective: DateTime
  v: 2016-12-15
performer:
  display:
    v: aTypingLab, Inc
value: CodeableConcept
  coding:
    system:
      v: http://glstring.org
      l: glstring.org
    version:
      v: 1.0
    code:
      v: hla#3.23.0#HLA-B*15:01:01G+HLA-B*57:01:01G
method:
  coding:
    system:
      v: https://www.ncbi.nlm.nih.gov/gtr
      l: gtr
    code:
      v: GTR000000000.0
  text:
    v: NGS based Class I HLA-A, -B, -C genotyping
specimen:
  display:
    v: buccal swab from John Storm
derived from:
  type:
    v: Observation
    l: Observation
  display:
    v: HLA-B*15:01:01G, exons 2 and 3
derived from:
  type:
    v: Observation
    l: Observation
  display:
    v: HLA-B*57:01:01G, exons 2 and 3
component:
  code:
    coding: https://loinc.org/rdf/48018-6
      system:
        v: http://loinc.org
        l: loinc.org
      code:
        v: 48018-6
      display:
        v: Gene studied [ID]
  value: CodeableConcept
    coding:
      system:
        v: http://www.genenames.org
        l: www.genenames.org
      code:
        v: HGNC:4932
      display:
        v: HLA-B

urn:…
type: MolecularSequence
id:
  v: CG-IG-HLA-FullBundle-01-20
text:
  status:
    v: generated
  div:
    v: Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-20 type: DNA Sequence coordinateSystem: 0 ReferenceSeqs - ReferenceSeqId WindowStart WindowEnd * HLA-C*01:02:01 486 756 observedSeq: GCTCCCACTCCATGAAGTATTTCTTCACATCCGTGTCCCGGCCTGGCCGCGGAGAGCCCCGCTTCATCTCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCGAGAGGGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGAAGTACAAGCGCCAGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG
type:
  v: dna
coordinate system:
  v: 0
reference seq:
  reference seq id:
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
      code:
        v: HLA00401
    text:
      v: HLA-C*01:02:01
  window start:
    v: 486
  window end:
    v: 756
observed seq:
  v: GCTCCCACTCCATGAAGTATTTCTTCACATCCGTGTCCCGGCCTGGCCGCGGAGAGCCCCGCTTCATCTCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCGAGAGGGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGAAGTACAAGCGCCAGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG

urn:…
type: MolecularSequence
id:
  v: CG-IG-HLA-FullBundle-01-21
text:
  status:
    v: generated
  div:
    v: Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-21 type: DNA Sequence coordinateSystem: 0 ReferenceSeqs - ReferenceSeqId WindowStart WindowEnd * HLA-C*01:02:01 1002 1278 observedSeq: GGTCTCACACCCTCCAGTGGATGTGTGGCTGCGACCTGGGGCCCGACGGGCGCCTCCTCCGCGGGTATGACCAGTACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACCGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGCGGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG
type:
  v: dna
coordinate system:
  v: 0
reference seq:
  reference seq id:
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
      code:
        v: HLA00401
    text:
      v: HLA-C*01:02:01
  window start:
    v: 1002
  window end:
    v: 1278
observed seq:
  v: GGTCTCACACCCTCCAGTGGATGTGTGGCTGCGACCTGGGGCCCGACGGGCGCCTCCTCCGCGGGTATGACCAGTACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACCGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGCGGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG

urn:…
type: MolecularSequence
id:
  v: CG-IG-HLA-FullBundle-01-22
text:
  status:
    v: generated
  div:
    v: Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-22 type: DNA Sequence coordinateSystem: 0 ReferenceSeqs - ReferenceSeqId WindowStart WindowEnd * HLA-C*03:04:01:01 486 756 observedSeq: GCTCCCACTCCATGAGGTATTTCTACACCGCTGTGTCCCGGCCCGGCCGCGGGGAGCCCCACTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCGAGAGGGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGAAGTACAAGCGCCAGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG
type:
  v: dna
coordinate system:
  v: 0
reference seq:
  reference seq id:
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
      code:
        v: HLA00413
    text:
      v: HLA-C*03:04:01:01
  window start:
    v: 486
  window end:
    v: 756
observed seq:
  v: GCTCCCACTCCATGAGGTATTTCTACACCGCTGTGTCCCGGCCCGGCCGCGGGGAGCCCCACTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCGAGAGGGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGAAGTACAAGCGCCAGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG

urn:…
type: MolecularSequence
id:
  v: CG-IG-HLA-FullBundle-01-23
text:
  status:
    v: generated
  div:
    v: Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-23 type: DNA Sequence coordinateSystem: 0 ReferenceSeqs - ReferenceSeqId WindowStart WindowEnd * HLA-C*03:04:01:01 1001 1277 observedSeq: GGTCTCACATCATCCAGAGGATGTATGGCTGCGACGTGGGGCCCGACGGGCGCCTCCTCCGCGGGTATGACCAGTACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGATCTGCGCTCCTGGACCGCCGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGCTGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGAAGAATGGGAAGGAGACGCTGCAGCGCGCGG
type:
  v: dna
coordinate system:
  v: 0
reference seq:
  reference seq id:
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
      code:
        v: HLA00413
    text:
      v: HLA-C*03:04:01:01
  window start:
    v: 1001
  window end:
    v: 1277
observed seq:
  v: GGTCTCACATCATCCAGAGGATGTATGGCTGCGACGTGGGGCCCGACGGGCGCCTCCTCCGCGGGTATGACCAGTACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGATCTGCGCTCCTGGACCGCCGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGCTGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGAAGAATGGGAAGGAGACGCTGCAGCGCGCGG

urn:…
type: Observation
id:
  v: CG-IG-HLA-FullBundle-01-24
meta:
  profile:
    v: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
    l: haplotype
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Observation CG-IG-HLA-FullBundle-01-24 Profile: Haplotype status: Final category: Laboratory, Genetics code: Haplotype name subject: John Storm effective: 2016-12-15 performer: aTypingLab, Inc value: HLA-C*01:02:01G method: NGS based Class I HLA-A, -B, -C genotyping specimen: buccal swab from John Storm derivedFrom: HLA-C*01:02:01, exon 2 HLA-C*01:02:01, exon 3 Components - Code Value[x] * Gene studied [ID] HLA-C
status:
  v: final
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/observation-category
      l: observation-category
    code:
      v: laboratory
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/v2-0074
      l: v2-0074
    code:
      v: GE
code:
  coding: https://loinc.org/rdf/84414-2
    system:
      v: http://loinc.org
      l: loinc.org
    code:
      v: 84414-2
    display:
      v: Haplotype name
subject:
  type:
    v: Patient
    l: Patient
  display:
    v: John Storm
effective: DateTime
  v: 2016-12-15
performer:
  display:
    v: aTypingLab, Inc
value: CodeableConcept
  coding:
    system:
      v: http://www.ebi.ac.uk/ipd/imgt/hla
      l: hla
    version:
      v: 3.23
    code:
      v: HLA-C*01:02:01G
    display:
      v: HLA-C*01:02:01G
method:
  coding:
    system:
      v: https://www.ncbi.nlm.nih.gov/gtr
      l: gtr
    code:
      v: GTR000000000.0
  text:
    v: NGS based Class I HLA-A, -B, -C genotyping
specimen:
  display:
    v: buccal swab from John Storm
derived from:
  type:
    v: MolecularSequence
    l: MolecularSequence
  display:
    v: HLA-C*01:02:01, exon 2
derived from:
  type:
    v: MolecularSequence
    l: MolecularSequence
  display:
    v: HLA-C*01:02:01, exon 3
component:
  code:
    coding: https://loinc.org/rdf/48018-6
      system:
        v: http://loinc.org
        l: loinc.org
      code:
        v: 48018-6
      display:
        v: Gene studied [ID]
  value: CodeableConcept
    coding:
      system:
        v: http://www.genenames.org
        l: www.genenames.org
      code:
        v: HGNC:4933
      display:
        v: HLA-C

urn:…
type: Observation
id:
  v: CG-IG-HLA-FullBundle-01-25
meta:
  profile:
    v: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
    l: haplotype
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Observation CG-IG-HLA-FullBundle-01-25 Profile: Haplotype status: Final category: Laboratory, Genetics code: Haplotype name subject: John Storm effective: 2016-12-15 performer: aTypingLab, Inc value: HLA-C*01:02:01G method: NGS based Class I HLA-A, -B, -C genotyping specimen: buccal swab from John Storm derivedFrom: HLA-C*03:04:01:01, exon 2 HLA-C*03:04:01:01, exon 3 Components - Code Value[x] * Gene studied [ID] HLA-C
status:
  v: final
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/observation-category
      l: observation-category
    code:
      v: laboratory
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/v2-0074
      l: v2-0074
    code:
      v: GE
code:
  coding: https://loinc.org/rdf/84414-2
    system:
      v: http://loinc.org
      l: loinc.org
    code:
      v: 84414-2
    display:
      v: Haplotype name
subject:
  type:
    v: Patient
    l: Patient
  display:
    v: John Storm
effective: DateTime
  v: 2016-12-15
performer:
  display:
    v: aTypingLab, Inc
value: CodeableConcept
  coding:
    system:
      v: http://www.ebi.ac.uk/ipd/imgt/hla
      l: hla
    version:
      v: 3.23
    code:
      v: HLA-C*01:02:01G
    display:
      v: HLA-C*01:02:01G
method:
  coding:
    system:
      v: https://www.ncbi.nlm.nih.gov/gtr
      l: gtr
    code:
      v: GTR000000000.0
  text:
    v: NGS based Class I HLA-A, -B, -C genotyping
specimen:
  display:
    v: buccal swab from John Storm
derived from:
  type:
    v: MolecularSequence
    l: MolecularSequence
  display:
    v: HLA-C*03:04:01:01, exon 2
derived from:
  type:
    v: MolecularSequence
    l: MolecularSequence
  display:
    v: HLA-C*03:04:01:01, exon 3
component:
  code:
    coding: https://loinc.org/rdf/48018-6
      system:
        v: http://loinc.org
        l: loinc.org
      code:
        v: 48018-6
      display:
        v: Gene studied [ID]
  value: CodeableConcept
    coding:
      system:
        v: http://www.genenames.org
        l: www.genenames.org
      code:
        v: HGNC:4933
      display:
        v: HLA-C

urn:…
type: Observation
id:
  v: CG-IG-HLA-FullBundle-01-26
meta:
  profile:
    v: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype
    l: genotype
text:
  status:
    v: generated
  div:
    v: Generated Narrative: Observation CG-IG-HLA-FullBundle-01-26 Profile: Genotype basedOn: Class I HLA genotyping for John Storm status: Final category: Laboratory, Genetics code: Genotype display name subject: John Storm effective: 2016-12-15 performer: aTypingLab, Inc value: hla#3.23.0#HLA-C*01:02:01G+HLA-C*03:04:01G method: NGS based Class I HLA-A, -B, -C genotyping specimen: buccal swab from John Storm derivedFrom: HLA-C*03:04:01G, exons 2 and 3 HLA-C*01:02:01G, exons 2 and 3 Components - Code Value[x] * Gene studied [ID] HLA-C
based on:
  type:
    v: ServiceRequest
    l: ServiceRequest
  display:
    v: Class I HLA genotyping for John Storm
status:
  v: final
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/observation-category
      l: observation-category
    code:
      v: laboratory
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/v2-0074
      l: v2-0074
    code:
      v: GE
code:
  coding: https://loinc.org/rdf/84413-4
    system:
      v: http://loinc.org
      l: loinc.org
    code:
      v: 84413-4
    display:
      v: Genotype display name
subject:
  type:
    v: Patient
    l: Patient
  display:
    v: John Storm
effective: DateTime
  v: 2016-12-15
performer:
  display:
    v: aTypingLab, Inc
value: CodeableConcept
  coding:
    system:
      v: http://glstring.org
      l: glstring.org
    version:
      v: 1.0
    code:
      v: hla#3.23.0#HLA-C*01:02:01G+HLA-C*03:04:01G
method:
  coding:
    system:
      v: https://www.ncbi.nlm.nih.gov/gtr
      l: gtr
    code:
      v: GTR000000000.0
  text:
    v: NGS based Class I HLA-A, -B, -C genotyping
specimen:
  display:
    v: buccal swab from John Storm
derived from:
  type:
    v: Observation
    l: Observation
  display:
    v: HLA-C*03:04:01G, exons 2 and 3
derived from:
  type:
    v: Observation
    l: Observation
  display:
    v: HLA-C*01:02:01G, exons 2 and 3
component:
  code:
    coding: https://loinc.org/rdf/48018-6
      system:
        v: http://loinc.org
        l: loinc.org
      code:
        v: 48018-6
      display:
        v: Gene studied [ID]
  value: CodeableConcept
    coding:
      system:
        v: http://www.genenames.org
        l: www.genenames.org
      code:
        v: HGNC:4933
      display:
        v: HLA-C

urn:…
type: DiagnosticReport
id:
  v: CG-IG-HLA-FullBundle-01-27
meta:
  profile:
    v: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report
    l: genomic-report
text:
  status:
    v: generated
  div:
    v: Generated Narrative: DiagnosticReport CG-IG-HLA-FullBundle-01-27 Profile: Genomic Report Genetic analysis report (Genetics) Subject John Storm(official) Male, DoB: 1986-12-31 ( Donor Registration Number (use: usual, period: 2012-11-10 --> (ongoing))) When For 2016-12-15 Reported 2016-12-15 14:15:30-0600 Performer aTypingLab Inc Report Details Code Value Flags Genotype display name hla#3.23.0#HLA-A:01:01G+HLA-A*01:02 Final Genotype display name hla#3.23.0#HLA-B*15:01:01G+HLA-B*57:01:01G Final Genotype display name hla#3.23.0#HLA-C*01:02:01G+HLA-C*03:04:01G Final
extension:
  url:
    v: http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-allele-database
    l: hla-genotyping-results-allele-database
  value: CodeableConcept
    coding:
      system:
        v: http://www.ebi.ac.uk/ipd/imgt/hla
        l: hla
      version:
        v: 3.23
extension:
  extension:
    url:
      v: text
      l: text
    value: String
      v: HLA-A*01:01:01G+HLA-A*01:02^HLA-B*15:01:01G+HLA-B*57:01:01G^HLA-C*01:02:01G+HLA-C*03:04:01G
  extension:
    url:
      v: url
      l: url
    value: Uri
      v: https://gl.nmdp.org/imgt-hla/3.23.0/multilocus-unphased-genotype/ex
      l: ex
  url:
    v: http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-glstring
    l: hla-genotyping-results-glstring
based on:
  type:
    v: ServiceRequest
    l: ServiceRequest
  display:
    v: Class I HLA genotyping for John Storm
status:
  v: final
category:
  coding:
    system:
      v: http://terminology.hl7.org/CodeSystem/v2-0074
      l: v2-0074
    code:
      v: GE
    display:
      v: Genetics
code:
  coding: https://loinc.org/rdf/51969-4
    system:
      v: http://loinc.org
      l: loinc.org
    code:
      v: 51969-4
    display:
      v: Genetic analysis report
subject:
  type:
    v: Patient
    l: Patient
  display:
    v: John Storm
effective: DateTime
  v: 2016-12-15
issued:
  v: 2016-12-15T14:15:30-06:00
performer:
  type:
    v: Organization
    l: Organization
  display:
    v: aTypingLab Inc
specimen:
  display:
    v: buccal swab from John Storm
result:
  type:
    v: Observation
    l: Observation
  display:
    v: HLA-A: HLA-A:01:01:01G+HLA-A*01:02
result:
  type:
    v: Observation
    l: Observation
  display:
    v: HLA-B: HLA-B*15:01:01G+HLA-B*57:01:01G
result:
  type:
    v: Observation
    l: Observation
  display:
    v: HLA-C: HLA-C*01:02:01G+HLA-C*03:04:01G