INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/fhir-us-ph-common-library-ig --branch master repo DEBUG:root:Time to deadline 35879.998361 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.33036 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35877.208676 seconds added 114 packages in 32s 8 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.6.7 -> 10.2.0 npm notice Changelog: npm notice Run `npm install -g npm@10.2.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-us-ph-common-library-ig/ -out /scratch/repo DEBUG:root:Time to deadline 35844.917255 seconds FHIR IG Publisher Version 1.4.11 (Git# 6a79a4da17c5). Built 2023-10-02T14:44:02.985Z (49 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-us-ph-common-library-ig/ -out /scratch/repo Start Clock @ Wednesday, October 4, 2023, 3:51:31 PM Coordinated Universal Time (2023-10-04T15:51:31Z) Build FHIR IG from /scratch/repo (00:00.021 / 00:00.022, 89Mb) API keys loaded from /etc/fhir-settings.json (00:00.004 / 00:00.026, 89Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.029, 89Mb) Run Sushi on /scratch/repo (00:00.006 / 00:00.036, 89Mb) Sushi: info Running SUSHI v3.4.0 (implements FHIR Shorthand specification v3.0.0-ballot) (00:00.641 / 00:00.677, 97Mb) Sushi: info Arguments: (00:00.002 / 00:00.680, 97Mb) Sushi: info --require-latest (00:00.000 / 00:00.681, 97Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.681, 97Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.681, 97Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.973 / 00:01.655, 97Mb) Sushi: info Importing FSH text... (00:00.195 / 00:01.850, 97Mb) Sushi: info Preprocessed 145 documents with 38 aliases. (00:00.710 / 00:02.561, 97Mb) Sushi: info Imported 90 definitions and 57 instances. (00:00.153 / 00:02.714, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.tools#current... (00:00.002 / 00:02.717, 97Mb) Sushi: info Did not find hl7.fhir.uv.tools#current in /home/fhiruser/.fhir/packages. (00:00.034 / 00:02.751, 97Mb) Sushi: info Downloading hl7.fhir.uv.tools#current... https://build.fhir.org/ig/FHIR/fhir-tools-ig/branches/master/package.tgz (00:00.145 / 00:02.897, 97Mb) Sushi: info Downloaded hl7.fhir.uv.tools#current (00:00.019 / 00:02.916, 97Mb) Sushi: info Loaded package hl7.fhir.uv.tools#current (00:00.075 / 00:02.992, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.terminology.r4#5.3.0... (00:00.956 / 00:03.948, 97Mb) Sushi: info Did not find hl7.terminology.r4#5.3.0 in /home/fhiruser/.fhir/packages. (00:00.027 / 00:03.976, 97Mb) Sushi: info Downloading hl7.terminology.r4#5.3.0... https://packages.fhir.org/hl7.terminology.r4/5.3.0 (00:00.000 / 00:03.977, 97Mb) Sushi: info Downloaded hl7.terminology.r4#5.3.0 (00:02.073 / 00:06.050, 97Mb) Sushi: info Loaded package hl7.terminology.r4#5.3.0 (00:01.920 / 00:07.971, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.us.core#5.0.1... (00:00.000 / 00:07.971, 97Mb) Sushi: info Did not find hl7.fhir.us.core#5.0.1 in /home/fhiruser/.fhir/packages. (00:00.497 / 00:08.469, 97Mb) Sushi: info Downloading hl7.fhir.us.core#5.0.1... https://packages.fhir.org/hl7.fhir.us.core/5.0.1 (00:00.000 / 00:08.470, 97Mb) Sushi: info Downloaded hl7.fhir.us.core#5.0.1 (00:01.409 / 00:09.880, 97Mb) Sushi: info Loaded package hl7.fhir.us.core#5.0.1 (00:00.746 / 00:10.626, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for us.cdc.phinvads#0.12.0... (00:00.000 / 00:10.627, 97Mb) Sushi: info Did not find us.cdc.phinvads#0.12.0 in /home/fhiruser/.fhir/packages. (00:00.601 / 00:11.228, 97Mb) Sushi: info Downloading us.cdc.phinvads#0.12.0... https://packages.fhir.org/us.cdc.phinvads/0.12.0 (00:00.000 / 00:11.229, 97Mb) Sushi: info Downloaded us.cdc.phinvads#0.12.0 (00:03.148 / 00:14.377, 97Mb) Sushi: info Loaded package us.cdc.phinvads#0.12.0 (00:06.284 / 00:20.662, 97Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for us.nlm.vsac#0.11.0... (00:00.000 / 00:20.663, 97Mb) Sushi: info Did not find us.nlm.vsac#0.11.0 in /home/fhiruser/.fhir/packages. (00:05.383 / 00:26.047, 97Mb) Sushi: info Downloading us.nlm.vsac#0.11.0... https://packages.fhir.org/us.nlm.vsac/0.11.0 (00:00.000 / 00:26.047, 97Mb) Sushi: info Downloaded us.nlm.vsac#0.11.0 (00:03.724 / 00:29.771, 97Mb) Sushi: info Loaded package us.nlm.vsac#0.11.0 (00:16.394 / 00:46.166, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.uv.extensions#1.0.0... (00:00.000 / 00:46.167, 113Mb) Sushi: info Did not find hl7.fhir.uv.extensions#1.0.0 in /home/fhiruser/.fhir/packages. (00:11.740 / 00:57.907, 113Mb) Sushi: info Downloading hl7.fhir.uv.extensions#1.0.0... https://packages.fhir.org/hl7.fhir.uv.extensions/1.0.0 (00:00.000 / 00:57.908, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions#1.0.0 (00:01.628 / 00:59.536, 113Mb) Sushi: info Loaded package hl7.fhir.uv.extensions#1.0.0 (00:12.305 / 01:11.842, 113Mb) Sushi: info Checking /home/fhiruser/.fhir/packages for hl7.fhir.r4.core#4.0.1... (00:00.001 / 01:11.843, 113Mb) Sushi: info Did not find hl7.fhir.r4.core#4.0.1 in /home/fhiruser/.fhir/packages. (00:12.864 / 01:24.707, 113Mb) Sushi: info Downloading hl7.fhir.r4.core#4.0.1... https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 01:24.708, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:02.592 / 01:27.301, 113Mb) Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:14.594 / 01:41.896, 121Mb) Sushi: info Converting FSH to FHIR resources... (00:00.061 / 01:41.957, 121Mb) Sushi: info Converted 68 FHIR StructureDefinitions. (00:13.477 / 01:55.435, 121Mb) Sushi: info Converted 10 FHIR CodeSystems. (00:28.371 / 02:23.807, 129Mb) Sushi: info Converted 12 FHIR ValueSets. (00:02.686 / 02:26.494, 129Mb) Sushi: warn Sliced element Condition.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.577 / 02:27.072, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-condition-encounter-diagnosis-diabetes.fsh (00:00.000 / 02:27.072, 129Mb) Sushi: Line: 6 (00:00.000 / 02:27.072, 129Mb) Sushi: warn Sliced element Patient.extension:individualGenderIdentity.extension is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.233 / 02:27.305, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-patient-eve-everywoman.fsh (00:00.000 / 02:27.306, 129Mb) Sushi: Line: 18 (00:00.000 / 02:27.306, 129Mb) Sushi: warn Sliced element Patient.extension:individualGenderIdentity.extension is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.006 / 02:27.313, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-patient-eve-everywoman.fsh (00:00.000 / 02:27.313, 129Mb) Sushi: Line: 19 (00:00.000 / 02:27.314, 129Mb) Sushi: warn Sliced element Patient.extension:individualGenderIdentity.extension is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.002 / 02:27.317, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-patient-eve-everywoman.fsh (00:00.000 / 02:27.317, 129Mb) Sushi: Line: 20 (00:00.000 / 02:27.317, 129Mb) Sushi: warn Element Patient.extension:individualGenderIdentity.extension:value.value[x] has its cardinality satisfied by a rule that does not include the slice name. Use slice names in rule paths when possible. (00:00.273 / 02:27.591, 129Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:01.656 / 02:29.247, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-lab-result-eve-everywoman-lymphocytes.fsh (00:00.000 / 02:29.247, 129Mb) Sushi: Line: 7 (00:00.000 / 02:29.248, 129Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:29.248, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-lab-result-eve-everywoman-lymphocytes.fsh (00:00.000 / 02:29.249, 129Mb) Sushi: Line: 8 (00:00.000 / 02:29.249, 129Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.086 / 02:29.335, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-lab-result-eve-everywoman-pertussis.fsh (00:00.000 / 02:29.336, 129Mb) Sushi: Line: 7 (00:00.000 / 02:29.336, 129Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:29.336, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-lab-result-eve-everywoman-pertussis.fsh (00:00.000 / 02:29.336, 129Mb) Sushi: Line: 8 (00:00.000 / 02:29.337, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:03.375 / 02:32.712, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-pregnancy-outcome-eve-everywoman.fsh (00:00.000 / 02:32.713, 129Mb) Sushi: Line: 14 (00:00.000 / 02:32.713, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:32.714, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-pregnancy-outcome-eve-everywoman.fsh (00:00.000 / 02:32.714, 129Mb) Sushi: Line: 15 (00:00.000 / 02:32.714, 129Mb) Sushi: warn Element Observation.component:birthOrder.value[x] has its cardinality satisfied by a rule that does not include the slice name. Use slice names in rule paths when possible. (00:00.050 / 02:32.765, 129Mb) Sushi: warn Sliced element Library.useContext is being accessed via numeric index. Use slice names in rule paths when possible. (00:01.159 / 02:33.924, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-specification-library-example.fsh (00:00.000 / 02:33.925, 129Mb) Sushi: Line: 15 (00:00.000 / 02:33.925, 129Mb) Sushi: warn Sliced element Library.useContext is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.004 / 02:33.930, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-specification-library-example.fsh (00:00.000 / 02:33.930, 129Mb) Sushi: Line: 16 (00:00.000 / 02:33.930, 129Mb) Sushi: warn Sliced element Library.useContext is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:33.931, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-specification-library-example.fsh (00:00.000 / 02:33.931, 129Mb) Sushi: Line: 17 (00:00.000 / 02:33.931, 129Mb) Sushi: warn Sliced element Library.useContext is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:33.932, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-specification-library-example.fsh (00:00.000 / 02:33.932, 129Mb) Sushi: Line: 18 (00:00.000 / 02:33.932, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.007 / 02:33.940, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-specification-library-example.fsh (00:00.000 / 02:33.940, 129Mb) Sushi: Line: 23 (00:00.000 / 02:33.941, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.004 / 02:33.945, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-specification-library-example.fsh (00:00.000 / 02:33.945, 129Mb) Sushi: Line: 24 (00:00.000 / 02:33.945, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:33.946, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-specification-library-example.fsh (00:00.000 / 02:33.946, 129Mb) Sushi: Line: 25 (00:00.000 / 02:33.946, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:33.946, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-specification-library-example.fsh (00:00.000 / 02:33.946, 129Mb) Sushi: Line: 26 (00:00.000 / 02:33.947, 129Mb) Sushi: warn Element Library.useContext:reportingContext.value[x] has its cardinality satisfied by a rule that does not include the slice name. Use slice names in rule paths when possible. (00:00.061 / 02:34.009, 129Mb) Sushi: warn Element Library.useContext:specificationTypeContext.value[x] has its cardinality satisfied by a rule that does not include the slice name. Use slice names in rule paths when possible. (00:00.003 / 02:34.012, 129Mb) Sushi: warn Sliced element Library.useContext is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.055 / 02:34.067, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-supplemental-library-example.fsh (00:00.000 / 02:34.068, 129Mb) Sushi: Line: 15 (00:00.000 / 02:34.068, 129Mb) Sushi: warn Sliced element Library.useContext is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.002 / 02:34.070, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-supplemental-library-example.fsh (00:00.000 / 02:34.071, 129Mb) Sushi: Line: 16 (00:00.000 / 02:34.071, 129Mb) Sushi: warn Sliced element Library.useContext is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.001 / 02:34.072, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-supplemental-library-example.fsh (00:00.000 / 02:34.072, 129Mb) Sushi: Line: 17 (00:00.000 / 02:34.072, 129Mb) Sushi: warn Sliced element Library.useContext is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:34.072, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-supplemental-library-example.fsh (00:00.000 / 02:34.072, 129Mb) Sushi: Line: 18 (00:00.000 / 02:34.073, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.006 / 02:34.079, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-supplemental-library-example.fsh (00:00.000 / 02:34.079, 129Mb) Sushi: Line: 23 (00:00.000 / 02:34.080, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.004 / 02:34.084, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-supplemental-library-example.fsh (00:00.000 / 02:34.085, 129Mb) Sushi: Line: 24 (00:00.000 / 02:34.085, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:34.085, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-supplemental-library-example.fsh (00:00.000 / 02:34.085, 129Mb) Sushi: Line: 25 (00:00.000 / 02:34.085, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:34.086, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-supplemental-library-example.fsh (00:00.000 / 02:34.086, 129Mb) Sushi: Line: 26 (00:00.000 / 02:34.086, 129Mb) Sushi: warn Element Library.useContext:reportingContext.value[x] has its cardinality satisfied by a rule that does not include the slice name. Use slice names in rule paths when possible. (00:00.061 / 02:34.147, 129Mb) Sushi: warn Element Library.useContext:specificationTypeContext.value[x] has its cardinality satisfied by a rule that does not include the slice name. Use slice names in rule paths when possible. (00:00.003 / 02:34.150, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.072 / 02:34.223, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-supplemental-valueset-library-example.fsh (00:00.000 / 02:34.223, 129Mb) Sushi: Line: 24 (00:00.000 / 02:34.223, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.004 / 02:34.228, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-supplemental-valueset-library-example.fsh (00:00.000 / 02:34.228, 129Mb) Sushi: Line: 25 (00:00.000 / 02:34.228, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.252 / 02:34.481, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-travel-history-eve-everywoman-1999.fsh (00:00.000 / 02:34.481, 129Mb) Sushi: Line: 13 (00:00.000 / 02:34.481, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:34.481, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-travel-history-eve-everywoman-1999.fsh (00:00.000 / 02:34.481, 129Mb) Sushi: Line: 14 (00:00.000 / 02:34.481, 129Mb) Sushi: warn Element Observation.component:travelLocation.value[x] has its cardinality satisfied by a rule that does not include the slice name. Use slice names in rule paths when possible. (00:00.055 / 02:34.537, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.035 / 02:34.572, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-travel-history-eve-everywoman-201610.fsh (00:00.000 / 02:34.573, 129Mb) Sushi: Line: 13 (00:00.000 / 02:34.573, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.003 / 02:34.576, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-travel-history-eve-everywoman-201610.fsh (00:00.000 / 02:34.576, 129Mb) Sushi: Line: 14 (00:00.000 / 02:34.577, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.014 / 02:34.591, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-travel-history-eve-everywoman-201610.fsh (00:00.000 / 02:34.591, 129Mb) Sushi: Line: 15 (00:00.000 / 02:34.591, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:34.592, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-travel-history-eve-everywoman-201610.fsh (00:00.000 / 02:34.592, 129Mb) Sushi: Line: 16 (00:00.000 / 02:34.592, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:34.593, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-travel-history-eve-everywoman-201610.fsh (00:00.000 / 02:34.593, 129Mb) Sushi: Line: 17 (00:00.000 / 02:34.593, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:34.594, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-travel-history-eve-everywoman-201610.fsh (00:00.000 / 02:34.594, 129Mb) Sushi: Line: 18 (00:00.000 / 02:34.594, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:34.594, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-travel-history-eve-everywoman-201610.fsh (00:00.000 / 02:34.594, 129Mb) Sushi: Line: 19 (00:00.000 / 02:34.595, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.123 / 02:34.718, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-travel-history-eve-everywoman-201801.fsh (00:00.000 / 02:34.718, 129Mb) Sushi: Line: 13 (00:00.000 / 02:34.718, 129Mb) Sushi: warn Sliced element Observation.component is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.000 / 02:34.718, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-travel-history-eve-everywoman-201801.fsh (00:00.000 / 02:34.719, 129Mb) Sushi: Line: 14 (00:00.000 / 02:34.719, 129Mb) Sushi: warn Element Observation.component:travelLocation.value[x] has its cardinality satisfied by a rule that does not include the slice name. Use slice names in rule paths when possible. (00:00.066 / 02:34.785, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.043 / 02:34.828, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-triggering-valueset-library-example.fsh (00:00.000 / 02:34.829, 129Mb) Sushi: Line: 21 (00:00.000 / 02:34.829, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.004 / 02:34.833, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-triggering-valueset-library-example.fsh (00:00.000 / 02:34.833, 129Mb) Sushi: Line: 22 (00:00.000 / 02:34.833, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.061 / 02:34.895, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-valueset-library-example.fsh (00:00.000 / 02:34.895, 129Mb) Sushi: Line: 21 (00:00.000 / 02:34.895, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.004 / 02:34.900, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-valueset-library-example.fsh (00:00.000 / 02:34.900, 129Mb) Sushi: Line: 22 (00:00.000 / 02:34.900, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.099 / 02:35.000, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-valueset-library-expansion-parameters-example.fsh (00:00.000 / 02:35.000, 129Mb) Sushi: Line: 24 (00:00.000 / 02:35.000, 129Mb) Sushi: warn Sliced element Library.relatedArtifact is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.004 / 02:35.004, 129Mb) Sushi: File: /scratch/repo/input/fsh/instances/us-ph-valueset-library-expansion-parameters-example.fsh (00:00.000 / 02:35.005, 129Mb) Sushi: Line: 25 (00:00.000 / 02:35.005, 129Mb) Sushi: info Converted 57 FHIR instances. (00:00.046 / 02:35.051, 129Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 02:35.052, 129Mb) Sushi: info Exported 143 FHIR resources as JSON. (00:00.371 / 02:35.423, 129Mb) Sushi: info Assembling Implementation Guide sources... (00:00.000 / 02:35.424, 129Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.us.ph-library.json (00:00.047 / 02:35.471, 129Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 02:35.471, 129Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 02:35.473, 129Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:35.473, 129Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 02:35.473, 129Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 02:35.473, 129Mb) Sushi: | | 42 | 26 | 0 | 0 | | (00:00.000 / 02:35.473, 129Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:35.473, 129Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:35.473, 129Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 02:35.474, 129Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 02:35.474, 129Mb) Sushi: | | 12 | 10 | 57 | | (00:00.000 / 02:35.474, 129Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 02:35.474, 129Mb) Sushi: | | (00:00.000 / 02:35.474, 129Mb) Sushi: =================================================================== (00:00.000 / 02:35.474, 129Mb) Sushi: | Do you sea the problem? 0 Errors 53 Warnings | (00:00.000 / 02:35.474, 129Mb) Sushi: =================================================================== (00:00.000 / 02:35.474, 129Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.955 / 02:36.429, 37Mb) Load Template from hl7.fhir.template#current (00:00.725 / 02:37.155, 95Mb) Installing hl7.fhir.template#current to the package cache Fetching: Installing hl7.fhir.template#current done. Load Template from hl7.base.template#current (00:01.258 / 02:38.414, 88Mb) Installing hl7.base.template#current to the package cache Fetching: Installing hl7.base.template#current done. Load Template from fhir.base.template#current (00:00.171 / 02:38.586, 96Mb) Installing fhir.base.template#current to the package cache Fetching: Installing fhir.base.template#current done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/repo/template/onLoad-ig-working.xml to /scratch/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/repo (00:04.348 / 02:42.934, 648Mb) Core Package hl7.fhir.r4.core#4.0.1 Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:34.818 / 03:17.753, 868Mb) Connect to Terminology Server at http://tx.fhir.org (00:00.002 / 03:17.756, 868Mb) Installing hl7.fhir.pubpack#0.1.6 to the package cache Fetching: Installing hl7.fhir.pubpack#0.1.6 done. Load Package hl7.fhir.pubpack#0.1.6 Installing hl7.fhir.xver-extensions#0.0.12 to the package cache Fetching: Installing hl7.fhir.xver-extensions#0.0.12 done. Load Package hl7.fhir.xver-extensions#0.0.12 Load Package hl7.terminology.r4#5.3.0 Installing hl7.terminology.r4#3.1.0 to the package cache Fetching: Installing hl7.terminology.r4#3.1.0 done. Load Package hl7.terminology.r4#3.1.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache Fetching: Installing hl7.fhir.uv.bulkdata#2.0.0 done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache Fetching: Installing hl7.fhir.uv.smart-app-launch#2.0.0 done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Installing us.nlm.vsac#0.7.0 to the package cache Fetching: Installing us.nlm.vsac#0.7.0 done. Load Package us.nlm.vsac#0.7.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache Fetching: Installing hl7.fhir.uv.sdc#3.0.0 done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (02:17.942 / 05:35.698, 1Gb) Load Package hl7.fhir.uv.sdc#3.0.0 Load Package hl7.fhir.us.core#5.0.1 Load Package us.cdc.phinvads#0.12.0 Load Package us.nlm.vsac#0.11.0 Version mismatch. This IG is version 4.0.1, while the IG 'hl7.fhir.uv.extensions' is from version 5.0.0 (will try to run anyway) (00:23.134 / 05:58.832, 11Gb) Installing hl7.terminology.r5#5.0.0 to the package cache Fetching: Installing hl7.terminology.r5#5.0.0 done. Ignore Dependency on Core FHIR hl7.fhir.r5.core#5.0.0, from package 'hl7.terminology.r5#5.0.0' (00:28.837 / 06:27.670, 1Gb) Load Package hl7.terminology.r5#5.0.0 Load Package hl7.fhir.uv.extensions#1.0.0 Version mismatch. This IG is version 4.0.1, while the IG 'hl7.fhir.uv.tools' is from version 5.0.0 (will try to run anyway) (00:06.993 / 06:34.663, 2Gb) Load Package hl7.fhir.uv.tools#1.0.0-candidate Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache Fetching: Installing hl7.fhir.r5.core#5.0.0 done. Initialization complete (00:05.761 / 06:40.425, 4Gb) Fetch http://hl7.org/fhir/us/ph-library/package-list.json for version check (00:00.002 / 06:40.427, 4Gb) Load Content (00:00.085 / 06:40.512, 4Gb) loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Processing Conformance Resources (00:06.306 / 06:46.819, 5Gb) Load Dependency Info (00:00.003 / 06:46.823, 5Gb) Load Info (00:00.002 / 06:46.825, 5Gb) Load Resources (00:00.001 / 06:46.826, 5Gb) Load Paths (00:03.096 / 06:49.923, 6Gb) Generating Snapshots (00:00.000 / 06:49.924, 6Gb) Check R4 / R4B (00:18.663 / 07:08.587, 586Mb) Propagating status (00:00.190 / 07:08.778, 518Mb) Generating Narratives (00:00.000 / 07:08.778, 518Mb) Validating Conformance Resources (00:17.994 / 07:26.772, 6Gb) Installing hl7.fhir.us.core#6.1.0 to the package cache Fetching: Installing hl7.fhir.us.core#6.1.0 done. US Core Comparisons Finished Validating Resources (01:03.471 / 08:30.244, 5Gb) Processing Provenance Records (00:06.608 / 08:36.852, 5Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 08:36.853, 5Gb) Generate Native Outputs (00:00.411 / 08:37.264, 6Gb) Run Template (00:32.939 / 09:10.204, 4Gb) onGenerate.checkVersions: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/versions.txt [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.getVersions.xslt [mkdir] Created dir: /scratch/repo/input-cache/schemas onGenerate.r5-schemas: [mkdir] Created dir: /scratch/repo/input-cache/schemas/R5 [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-single.xsd [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: [mkdir] Created dir: /scratch/repo/input-cache/schemas/R4 [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/repo/input-cache/schemas/R4/fhir-single.xsd [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/repo/input-cache/schemas/R4/xml.xsd [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 20 files to /scratch/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/repo/template/onGenerate-ig-working.xml to /scratch/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.1.xml to /scratch/repo/template/onGenerate-ig-working.2.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.groupSort.xslt [xslt] Processing /scratch/repo/template/onGenerate-ig-working.2.xml to /scratch/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.jira.setup: [xslt] Processing /scratch/repo/template/onGenerate-ig-updated.xml to /scratch/repo/template/properties.txt [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.genProperties.xslt [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml [get] To: /scratch/repo/input-cache/workgroups.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/_workgroups.xml [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-us-ph-library.xml [get] To: /scratch/repo/input-cache/jiraspec.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-us-ph-library.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/FHIR-us-ph-library.xml onGenerate.jira.packagelistcopy: onGenerate.jira.packagelistget: [get] Getting: http://hl7.org/fhir/us/ph-library/package-list.json [get] To: /scratch/repo/template/onGenerate.jira.workingpackage-list.json onGenerate.jira.packagelistProcess: [xslt] Processing /scratch/repo/template/onGenerate.jira.package-list.tmp.xml to /scratch/repo/template/onGenerate.jira.package-list.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.package-list.xslt onGenerate.jira.packagelistSkip: onGenerate.jira.pubrequestProcess: [xslt] Processing /scratch/repo/template/onGenerate.jira.pubrequest.tmp.xml to /scratch/repo/template/onGenerate.jira.pubrequest.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.pubrequest.xslt onGenerate.jira.pubrequestSkip: onGenerate.jira.generate: [xslt] Processing /scratch/repo/template/onGenerate.jira.tmp.xml to /scratch/repo/template/onGenerate.jira.tmp2.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.process-pkg-list.xslt [xslt] Processing /scratch/repo/template/onGenerate.jira.tmp2.xml to /scratch/repo/template/onGenerate.jira.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.jira.xslt [xslt] Processing /scratch/repo/template/onGenerate.jira.xml to /scratch/repo/template/jira-new.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.normalize.xslt [xslt] Processing /scratch/repo/input-cache/jiraspec.xml to /scratch/repo/template/jira-current.xml [xslt] Loading stylesheet /scratch/repo/template/scripts/onGenerate.normalize.xslt [copy] Copying 1 file to /scratch/repo onGenerate.jira.check: onGenerate.jira.skip-offline: onGenerate.jira.skip-missing: onGenerate.jira: onGenerate.extend: onGenerate: Template Done (00:02.841 / 09:13.045, 4Gb) Generate HTML Outputs (00:00.000 / 09:13.046, 4Gb) ERROR StatusLogger Log4j2 could not find a logging implementation. Please add log4j-core to the classpath. Using SimpleLogger to log to the console... Generate Summaries (02:00.559 / 11:13.606, 4Gb) Generating Summary Outputs (00:00.000 / 11:13.606, 4Gb) Installing hl7.fhir.r4.examples#4.0.1 to the package cache Fetching: Installing hl7.fhir.r4.examples#4.0.1 done. DB Cumulative Time invested: 0:0:9.955 Sending Usage Stats to Server (03:10.597 / 14:24.203, 6Gb) ## Memory (MB): Use = 6763, Free = 12244, Total = 19008, Max = 19008 Reclaiming memory... ## Memory (MB): Use = 3807, Free = 15196, Total = 19008, Max = 19008 Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:03.587 / 14:27.791, 3Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.515 / 14:28.306, 3Gb) Jekyll: Generating... (00:00.000 / 14:28.306, 3Gb) Jekyll: done in 6.402 seconds. (00:06.401 / 14:34.708, 3Gb) Checking Output HTML (00:10.163 / 14:44.872, 8Gb) found 2221 files (00:00.013 / 14:44.885, 8Gb) ........................................ ........................................ ... 2221 html files, 0 pages invalid xhtml (0%) (01:12.549 / 15:57.434, 4Gb) ... 682138 links, 0 broken links (0%) (00:00.000 / 15:57.435, 4Gb) Build final .zip (00:00.000 / 15:57.435, 4Gb) Final .zip built (00:08.439 / 16:05.874, 4Gb) Built. Times: loading: 00:06.306, generate: 09:33.135, narrative generation: 00:17.994, realm-rules: 00:13.401, previous-version: 00:00.000, jekyll: 00:06.958, validation: 00:55.914 (#144), template: 00:02.841 (#3) (00:14.167 / 16:20.042, 9Gb) Validation output in /scratch/repo/output/qa.html Errors: 75, Warnings: 24, Info: 3, Broken Links: 0 (00:01.731 / 16:21.773, 10Gb) Finished. Max Memory Used = 11Gb (00:00.040 / 16:21.814, 10Gb)