INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/fhir-spl --branch main repo DEBUG:root:Time to deadline 35879.997446 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35874.510957 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35873.49018 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 140 packages in 6s 15 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.5.1 npm notice Changelog: npm notice Run `npm install -g npm@11.5.1` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-spl/ -out /scratch/repo DEBUG:root:Time to deadline 35867.186887 seconds FHIR IG Publisher Version 2.0.11 (Git# 321ce468cbb9). Built 2025-07-23T06:49:49.649Z (57 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-spl/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Friday, July 25, 2025, 4:21:31 PM Coordinated Universal Time (2025-07-25T16:21:31Z) Build FHIR IG from /scratch/repo (00:00.031 / 00:00.031, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.033, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.036, 97Mb) Run Sushi on /scratch/repo (00:00.004 / 00:00.041, 97Mb) Sushi: info Running SUSHI v3.16.3 (implements FHIR Shorthand specification v3.0.0) (00:00.632 / 00:00.674, 113Mb) Sushi: info Arguments: (00:00.000 / 00:00.675, 113Mb) Sushi: info --require-latest (00:00.000 / 00:00.675, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:00.675, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:00.676, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.650 / 00:01.327, 113Mb) Sushi: info Importing FSH text... (00:00.136 / 00:01.463, 113Mb) Sushi: info Preprocessed 22 documents with 2 aliases. (00:00.512 / 00:01.975, 113Mb) Sushi: info Imported 93 definitions and 144 instances. (00:00.156 / 00:02.132, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r5#latest to concrete version 0.7.0 (00:00.742 / 00:02.875, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r5#0.7.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r5/0.7.0 (00:00.001 / 00:02.876, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r5#0.7.0 (00:00.996 / 00:03.873, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r5#0.7.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r5#0.7.0 (00:00.002 / 00:03.876, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r5#0.7.0 with 102 resources (00:00.069 / 00:03.945, 113Mb) Sushi: info Resolved hl7.terminology.r5#latest to concrete version 6.5.0 (00:00.478 / 00:04.423, 113Mb) Sushi: info Attempting to download hl7.terminology.r5#6.5.0 from https://packages.fhir.org/hl7.terminology.r5/6.5.0 (00:00.000 / 00:04.424, 113Mb) Sushi: info Downloaded hl7.terminology.r5#6.5.0 (00:02.956 / 00:07.381, 113Mb) Sushi: info Cached hl7.terminology.r5#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r5#6.5.0 (00:00.002 / 00:07.384, 113Mb) Sushi: info Loaded hl7.terminology.r5#6.5.0 with 4392 resources (00:01.400 / 00:08.784, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r5#latest to concrete version 5.2.0 (00:00.463 / 00:09.247, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r5#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r5/5.2.0 (00:00.000 / 00:09.247, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r5#5.2.0 (00:01.605 / 00:10.853, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r5#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r5#5.2.0 (00:00.003 / 00:10.856, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r5#5.2.0 with 759 resources (00:00.241 / 00:11.098, 113Mb) Sushi: info Attempting to download hl7.fhir.r5.core#5.0.0 from https://packages.fhir.org/hl7.fhir.r5.core/5.0.0 (00:00.000 / 00:11.099, 113Mb) Sushi: info Downloaded hl7.fhir.r5.core#5.0.0 (00:04.139 / 00:15.238, 113Mb) Sushi: info Cached hl7.fhir.r5.core#5.0.0 to /home/fhiruser/.fhir/packages/hl7.fhir.r5.core#5.0.0 (00:00.001 / 00:15.240, 113Mb) Sushi: info Loaded hl7.fhir.r5.core#5.0.0 with 2968 resources (00:01.070 / 00:16.310, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 1 resources (00:00.059 / 00:16.370, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.024 / 00:16.394, 113Mb) Sushi: info Converted 62 FHIR StructureDefinitions. (00:07.205 / 00:23.599, 113Mb) Sushi: info Converted 7 FHIR CodeSystems. (00:00.148 / 00:23.748, 113Mb) Sushi: info Converted 24 FHIR ValueSets. (00:00.582 / 00:24.330, 113Mb) Sushi: info Converted 144 FHIR instances. (00:13.091 / 00:37.422, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.000 / 00:37.423, 113Mb) Sushi: info Exported 237 FHIR resources as JSON. (00:00.309 / 00:37.733, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.006 / 00:37.739, 113Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.us.spl.json (00:00.017 / 00:37.757, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:37.757, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:37.759, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:37.759, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:37.759, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:37.759, 113Mb) Sushi: | | 52 | 5 | 5 | 0 | | (00:00.000 / 00:37.760, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:37.760, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:37.760, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:37.760, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:37.760, 113Mb) Sushi: | | 24 | 7 | 144 | | (00:00.000 / 00:37.760, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:37.761, 113Mb) Sushi: | | (00:00.000 / 00:37.761, 113Mb) Sushi: =================================================================== (00:00.000 / 00:37.761, 113Mb) Sushi: | You're in the swim of things now! 0 Errors 0 Warnings | (00:00.000 / 00:37.762, 113Mb) Sushi: =================================================================== (00:00.000 / 00:37.762, 113Mb) Load Template from hl7.fhir.template#current (00:00.646 / 00:38.408, 38Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:01.469 / 00:39.877, 102Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir.base.template#current (00:00.253 / 00:40.130, 102Mb) Installing fhir.base.template#current to the package cache  Fetching:  Installing fhir.base.template#current  done. Root directory: /scratch/repo (00:04.587 / 00:44.718, 179Mb) Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:00.002 / 00:44.721, 179Mb) Core Package hl7.fhir.r5.core#5.0.0 Running Terminology Log: /tmp/ohfu-fhir-ig-3138767911811180252.html Connect to Terminology Server at http://tx.fhir.org (00:05.158 / 00:49.879, 698Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r5#6.5.0 Load Package hl7.fhir.uv.extensions.r5#5.2.0 Load Package hl7.fhir.uv.tools.r5#0.7.0 Initialization complete (00:06.644 / 00:56.523, 661Mb) Load IG (00:00.000 / 00:56.524, 661Mb) Load Content (00:00.000 / 00:56.524, 661Mb) Using en-US as the default narrative language. (no language information in Implementation Guide) (00:00.109 / 00:56.634, 677Mb) Process Loaded Resources (00:03.000 / 00:59.634, 1Gb) Generating Snapshots (00:00.299 / 00:59.933, 1Gb) loadPrePages from FetchedFile[/scratch/repo/fsh-generated/includes] as /scratch/repo/fsh-generated/includes loadPrePages from FetchedFile[/scratch/repo/input/intro-notes] as /scratch/repo/input/intro-notes loadPrePages from FetchedFile[/scratch/repo/input/pagecontent] as /scratch/repo/input/pagecontent Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/spl/package-list.json for version check (00:02.717 / 01:02.650, 836Mb) Processing Conformance Resources (00:00.313 / 01:02.964, 852Mb) Checking Language (00:00.000 / 01:02.964, 852Mb) Load Dependency Info (00:00.004 / 01:02.969, 852Mb) Load Info (00:00.002 / 01:02.971, 852Mb) Load Paths (00:00.002 / 01:02.974, 855Mb) Check R4 / R4B (00:00.000 / 01:02.974, 855Mb) Assign Comparison Ids (00:00.071 / 01:03.046, 876Mb) Propagating status (00:00.000 / 01:03.047, 876Mb) Generating Narratives (00:00.124 / 01:03.171, 996Mb) Validating Conformance Resources (00:08.601 / 01:11.772, 765Mb) Check profiles & code systems (00:29.554 / 01:41.327, 1Gb) Check realm rules (00:00.009 / 01:41.337, 1Gb) Installing hl7.fhir.us.core#8.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#8.0.0  done. US Core Comparisons Finished Previous Version Comparison (00:06.647 / 01:47.984, 1Gb) Checking for Bundles to sign (00:00.105 / 01:48.089, 1Gb) Validating Resources (00:00.000 / 01:48.090, 1Gb) Processing Provenance Records (00:19.637 / 02:07.728, 2Gb) Generating Outputs in /scratch/repo/output (00:00.000 / 02:07.728, 2Gb) Generate Native Outputs (00:00.391 / 02:08.121, 2Gb) Run Template (00:15.182 / 02:23.303, 4Gb) Generate HTML Outputs (00:04.027 / 02:27.331, 5Gb) Generate Spreadsheets (00:46.260 / 03:13.592, 5Gb) Generate Summaries (00:12.621 / 03:26.213, 2Gb) Generating Summary Outputs (00:00.000 / 03:26.213, 2Gb) Table of contents has a section with more than 222 entries. Collapsing will not work reliably DB Cumulative Time invested: 00:00:17.731 Sending Usage Stats to Server (00:15.433 / 03:41.646, 1Gb) ## Memory (MB): Use = 1580, Free = 17427, Total = 19008, Max = 19008 (00:00.009 / 03:41.655, 1Gb) Reclaiming memory... (00:00.003 / 03:41.658, 1Gb) ## Memory (MB): Use = 790, Free = 18217, Total = 19008, Max = 19008 (00:00.838 / 03:42.497, 800Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 03:42.499, 800Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 03:42.499, 800Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 03:42.499, 800Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 03:42.499, 800Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.499 / 03:42.998, 822Mb) Jekyll: Generating... (00:00.000 / 03:42.998, 822Mb) Jekyll: done in 8.16 seconds. (00:08.159 / 03:51.158, 824Mb) Checking Output HTML (00:02.852 / 03:54.010, 2Gb) found 3408 files (00:00.016 / 03:54.027, 2Gb) ........................................ ........................................ ... 3408 html files, 0 pages invalid xhtml (0%) (00:39.217 / 04:33.245, 5Gb) ... 833009 links, 6 broken links (0%) (00:00.000 / 04:33.245, 5Gb) Generate fragment-usage-analysis.csv (00:00.000 / 04:33.245, 5Gb) Build final .zip (00:00.008 / 04:33.253, 5Gb) Final .zip built (00:05.889 / 04:39.143, 5Gb) Built. Times: loading: 00:06.439, generate: 03:38.015, propagating status: 00:00.124, narrative generation: 00:08.600, realm-rules: 00:06.647, previous-version: 00:00.000, jekyll: 00:08.727, validation: 00:48.958 (#239), template: 00:04.035 (#3) (00:01.836 / 04:40.979, 5Gb) Generating QA (00:00.000 / 04:40.979, 5Gb) Validation output in /scratch/repo/output/qa.html Errors: 8, Warnings: 43, Info: 45, Broken Links: 6 (00:00.556 / 04:41.536, 5Gb) Finished @ 7/25/25, 4:26 PM. Max Memory Used = 5Gb (00:00.044 / 04:41.580, 5Gb)