INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/fhir-sirb --branch master repo DEBUG:root:Time to deadline 35879.99725 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.378499 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.459374 seconds added 107 packages, and audited 116 packages in 5s 2 moderate severity vulnerabilities To address all issues, run: npm audit fix Run `npm audit` for details. npm notice npm notice New major version of npm available! 7.18.1 -> 9.6.5 npm notice Changelog: npm notice Run `npm install -g npm@9.6.5` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-sirb/ -out /scratch/ig-build-temp-IL8X7N/repo DEBUG:root:Time to deadline 35872.917166 seconds FHIR IG Publisher Version 1.3.4 (Git# b9e58ebc9169). Built 2023-03-29T15:55:51.502Z (26 days old) Detected Java version: 11.0.9 from /usr/local/openjdk-11 on Linux/amd64 (64bit). 18366MB available dir = /scratch/ig-build-temp-IL8X7N/repo, path = /usr/local/rvm/bin:/usr/local/rvm/rubies/ruby-2.5.1/bin:/usr/local/openjdk-11/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-sirb/ -out /scratch/ig-build-temp-IL8X7N/repo Start Clock @ Monday, April 24, 2023 at 8:02:48 PM Coordinated Universal Time (2023-04-24T20:02:48Z) Build FHIR IG from /scratch/ig-build-temp-IL8X7N/repo (00:00.008) API keys loaded from /etc/ig.builder.keyfile.ini (00:00.014) Package Cache: var/lib/.fhir/packages (00:00.018) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.884) Load Template from hl7.fhir.template#current (00:01.673) Installing hl7.fhir.template#current to the package cache Fetching: Installing: done. Load Template from hl7.base.template#current (00:02.258) Installing hl7.base.template#current to the package cache Fetching: Installing: done. Load Template from fhir.base.template#current (00:02.285) Installing fhir.base.template#current to the package cache Fetching: .. Installing: .. done. onLoad.findSpreadsheets: onLoad.updateIg: [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onLoad-ig-working.xml to /scratch/ig-build-temp-IL8X7N/repo/template/onLoad-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onLoad.xslt onLoad.extend: onLoad: Root directory: /scratch/ig-build-temp-IL8X7N/repo (00:07.131) Core Package hl7.fhir.r4.core#4.0.1 Installing hl7.fhir.r4.core#4.0.1 to the package cache Fetching: .................................................................................................... Installing: .................................................................................................... done. .:Terminology Cache is at /scratch/ig-build-temp-IL8X7N/repo/input-cache/txcache. Trimming now (00:22.135) Connect to Terminology Server at http://tx.fhir.org (00:22.143) Installing hl7.fhir.pubpack#0.1.4 to the package cache Fetching: .......... Installing: .......... done. Load Package hl7.fhir.pubpack#0.1.4 Installing hl7.fhir.xver-extensions#0.0.12 to the package cache Fetching: Installing: done. Load Package hl7.fhir.xver-extensions#0.0.12 Installing hl7.terminology.r4#5.0.0 to the package cache Fetching: .................................................................................... Installing: .................................................................................... done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache Fetching: .... Installing: .... done. Ignore Core Dependency on FHIR version 4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:36.114) Load Package hl7.fhir.uv.sdc#3.0.0 Installing hl7.fhir.uv.tools#current to the package cache Fetching: . Installing: . done. Version mismatch. This IG is version 4.0.1, while the IG 'igtools' is from version 5.0.0 (will try to run anyway) (00:36.269) Load Package hl7.fhir.uv.tools#current Initialization complete (00:37.176) Fetch http://hl7.org/fhir/us/sirb/package-list.json for version check (00:37.178) Load Content (00:37.255) loadPrePages from FetchedFile[/scratch/ig-build-temp-IL8X7N/repo/input/includes] as /scratch/ig-build-temp-IL8X7N/repo/input/includes loadPrePages from FetchedFile[/scratch/ig-build-temp-IL8X7N/repo/input/pagecontent] as /scratch/ig-build-temp-IL8X7N/repo/input/pagecontent Processing Conformance Resources (00:39.009) Generating Snapshots (00:40.615) Propagating status (00:40.732) Generating Narratives (00:40.732) Validating Conformance Resources (00:44.708) US Core Comparisons Finished Validating Resources (00:51.263) Processing Provenance Records (00:51.965) Generating Outputs in /scratch/ig-build-temp-IL8X7N/repo/output (00:51.965) Run Template (00:54.224) onGenerate.checkVersions: [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-IL8X7N/repo/template/versions.txt [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.getVersions.xslt onGenerate.r5-schemas: [get] Getting: http://build.fhir.org/fhir-single.xsd [get] To: /scratch/ig-build-temp-IL8X7N/repo/input-cache/schemas/R5/fhir-single.xsd [get] Not modified - so not downloaded [get] Getting: http://build.fhir.org/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-IL8X7N/repo/input-cache/schemas/R5/fhir-xhtml.xsd [get] Not modified - so not downloaded [get] Getting: http://build.fhir.org/xml.xsd [get] To: /scratch/ig-build-temp-IL8X7N/repo/input-cache/schemas/R5/xml.xsd [get] Getting: http://build.fhir.org/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-IL8X7N/repo/input-cache/schemas/R5/xmldsig-core-schema.xsd onGenerate.r4-schemas: [get] Getting: http://hl7.org/fhir/R4/fhir-single.xsd [get] To: /scratch/ig-build-temp-IL8X7N/repo/input-cache/schemas/R4/fhir-single.xsd [get] Not modified - so not downloaded [get] Getting: http://hl7.org/fhir/R4/fhir-xhtml.xsd [get] To: /scratch/ig-build-temp-IL8X7N/repo/input-cache/schemas/R4/fhir-xhtml.xsd [get] Not modified - so not downloaded [get] Getting: http://hl7.org/fhir/R4/xml.xsd [get] To: /scratch/ig-build-temp-IL8X7N/repo/input-cache/schemas/R4/xml.xsd [get] Getting: http://hl7.org/fhir/R4/xmldsig-core-schema.xsd [get] To: /scratch/ig-build-temp-IL8X7N/repo/input-cache/schemas/R4/xmldsig-core-schema.xsd onGenerate.r3-schemas: onGenerate.r2b-schemas: onGenerate.r2-schemas: onGenerate.schemas: onGenerate.data: [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-IL8X7N/repo/temp/pages/_data/artifacts.json [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.data.xslt onGenerate.setup: onGenerate.infoFile: [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-IL8X7N/repo/temp/pages/_data/info.json [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.genJson.xslt onGenerate.processIncludes: [copy] Copying 17 files to /scratch/ig-build-temp-IL8X7N/repo/temp/pages/_includes onGenerate.processIg: [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate-ig-working.xml to /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate-ig-working.1.xml [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.group.xslt [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate-ig-working.1.xml to /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate-ig-updated.xml [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.final.xslt onGenerate.igQa: [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-IL8X7N/repo/template/ongenerate-validation-igqa.json [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.qa.xslt onGenerate.artifactList: [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-IL8X7N/repo/temp/pages/_includes/artifacts.xml [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/createArtifactSummary.xslt check-plantumlfiles: onGenerate.plantUml.ig: onGenerate.plantUml.template: onGenerate.plantUml: onGenerate.copyDataFiles: onGenerate.jira.setup: [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate-ig-updated.xml to /scratch/ig-build-temp-IL8X7N/repo/template/properties.txt [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.genProperties.xslt [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml [get] To: /scratch/ig-build-temp-IL8X7N/repo/input-cache/workgroups.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/_workgroups.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/_workgroups.xml [get] Getting: https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-us-sirb.xml [get] To: /scratch/ig-build-temp-IL8X7N/repo/input-cache/jiraspec.xml [get] https://github.com/HL7/JIRA-Spec-Artifacts/raw/master/xml/FHIR-us-sirb.xml moved to https://raw.githubusercontent.com/HL7/JIRA-Spec-Artifacts/master/xml/FHIR-us-sirb.xml onGenerate.jira.packagelistcopy: onGenerate.jira.packagelistget: [get] Getting: http://hl7.org/fhir/us/sirb/package-list.json [get] To: /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate.jira.workingpackage-list.json onGenerate.jira.packagelistProcess: [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate.jira.package-list.tmp.xml to /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate.jira.package-list.xml [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.package-list.xslt onGenerate.jira.packagelistSkip: onGenerate.jira.pubrequestProcess: [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate.jira.pubrequest.tmp.xml to /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate.jira.pubrequest.xml [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.pubrequest.xslt onGenerate.jira.pubrequestSkip: onGenerate.jira.generate: [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate.jira.tmp.xml to /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate.jira.tmp2.xml [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.process-pkg-list.xslt [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate.jira.tmp2.xml to /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate.jira.xml [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.jira.xslt [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/template/onGenerate.jira.xml to /scratch/ig-build-temp-IL8X7N/repo/template/jira-new.xml [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.normalize.xslt [xslt] Processing /scratch/ig-build-temp-IL8X7N/repo/input-cache/jiraspec.xml to /scratch/ig-build-temp-IL8X7N/repo/template/jira-current.xml [xslt] Loading stylesheet /scratch/ig-build-temp-IL8X7N/repo/template/scripts/onGenerate.normalize.xslt [copy] Copying 1 file to /scratch/ig-build-temp-IL8X7N/repo onGenerate.jira.check: onGenerate.jira.skip-offline: onGenerate.jira.skip-missing: onGenerate.jira: onGenerate.extend: onGenerate: Template Done (00:55.275) Unable to convert resource ResearchStudy/ResearchStudyExample-sIRB for rendering: The resource ResearchStudy cannot be converted from R4 to R5 (00:57.589) This resource contains other resources that won't be rendered correctly, and Jekyll may fail (00:57.590) Generating Summary Outputs (00:59.812) Warning @ Unable to read the git branch: error: unknown option `show-current'usage: git branch [] [-r | -a] [--merged | --no-merged] or: git branch [] [-l] [-f] [] or: git branch [] [-r] (-d | -D) ... or: git branch [] (-m | -M) [] or: git branch [] (-c | -C) [] or: git branch [] [-r | -a] [--points-at] or: git branch [] [-r | -a] [--format]Generic options -v, --verbose show hash and subject, give twice for upstream branch -q, --quiet suppress informational messages -t, --track set up tracking mode (see git-pull(1)) -u, --set-upstream-to change the upstream info --unset-upstream Unset the upstream info --color[=] use colored output -r, --remotes act on remote-tracking branches --contains print only branches that contain the commit --no-contains print only branches that don't contain the commit --abbrev[=] use digits to display SHA-1sSpecific git-branch actions: -a, --all list both remote-tracking and local branches -d, --delete delete fully merged branch -D delete branch (even if not merged) -m, --move move/rename a branch and its reflog -M move/rename a branch, even if target exists -c, --copy copy a branch and its reflog -C copy a branch, even if target exists -l, --list list branch names --create-reflog create the branch's reflog --edit-description edit the description for the branch -f, --force force creation, move/rename, deletion --merged print only branches that are merged --no-merged print only branches that are not merged --column[=