INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/fhir-sdoh-clinicalcare --branch master repo DEBUG:root:Time to deadline 35879.998219 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35877.222927 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35876.204125 seconds npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 7s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.7.0 npm notice Changelog: npm notice Run `npm install -g npm@11.7.0` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-sdoh-clinicalcare/ -out /scratch/repo DEBUG:root:Time to deadline 35869.247119 seconds FHIR IG Publisher Version 2.0.28 (Git# 6c0c59a855ec). Built 2025-12-08T04:22:21.813Z (4 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-sdoh-clinicalcare/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Friday, December 12, 2025, 4:15:20 PM Coordinated Universal Time (2025-12-12T16:15:20Z) Build FHIR IG from /scratch/repo (00:00.027 / 00:00.028, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.031, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.003 / 00:00.035, 97Mb) Run Sushi on /scratch/repo (00:00.009 / 00:00.044, 97Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.972 / 00:01.016, 113Mb) Sushi: info Arguments: (00:00.000 / 00:01.017, 113Mb) Sushi: info --require-latest (00:00.000 / 00:01.017, 113Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:01.017, 113Mb) Sushi: info /scratch/repo (00:00.000 / 00:01.018, 113Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:00.729 / 00:01.748, 113Mb) Sushi: info Importing FSH text... (00:00.197 / 00:01.945, 113Mb) Sushi: info Preprocessed 139 documents with 45 aliases. (00:01.458 / 00:03.404, 113Mb) Sushi: info Imported 45 definitions and 78 instances. (00:00.727 / 00:04.131, 113Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.178 / 00:04.309, 113Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.597 / 00:04.907, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:04.909, 113Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.774 / 00:05.684, 113Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.003 / 00:05.687, 113Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.093 / 00:05.780, 113Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.446 / 00:06.227, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:06.227, 113Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.519 / 00:07.746, 113Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:07.748, 113Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.462 / 00:08.210, 113Mb) Sushi: info Attempting to download hl7.fhir.us.core#7.0.0 from https://packages.fhir.org/hl7.fhir.us.core/7.0.0 (00:00.001 / 00:08.211, 113Mb) Sushi: info Downloaded hl7.fhir.us.core#7.0.0 (00:01.581 / 00:09.793, 113Mb) Sushi: info Cached hl7.fhir.us.core#7.0.0 to /home/fhiruser/.fhir/packages/hl7.fhir.us.core#7.0.0 (00:00.001 / 00:09.794, 113Mb) Sushi: info Loaded hl7.fhir.us.core#7.0.0 with 211 resources (00:00.145 / 00:09.940, 113Mb) Sushi: info Attempting to download hl7.fhir.us.core.v610#6.1.0 from https://packages.fhir.org/hl7.fhir.us.core.v610/6.1.0 (00:00.000 / 00:09.940, 113Mb) Sushi: info Downloaded hl7.fhir.us.core.v610#6.1.0 (00:00.424 / 00:10.365, 113Mb) Sushi: info Cached hl7.fhir.us.core.v610#6.1.0 to /home/fhiruser/.fhir/packages/hl7.fhir.us.core.v610#6.1.0 (00:00.001 / 00:10.366, 113Mb) Sushi: info Loaded hl7.fhir.us.core.v610#6.1.0 with 0 resources (00:00.001 / 00:10.368, 113Mb) Sushi: info Attempting to download hl7.fhir.us.core.v311#3.1.1 from https://packages.fhir.org/hl7.fhir.us.core.v311/3.1.1 (00:00.000 / 00:10.368, 113Mb) Sushi: info Downloaded hl7.fhir.us.core.v311#3.1.1 (00:00.452 / 00:10.821, 113Mb) Sushi: info Cached hl7.fhir.us.core.v311#3.1.1 to /home/fhiruser/.fhir/packages/hl7.fhir.us.core.v311#3.1.1 (00:00.001 / 00:10.822, 113Mb) Sushi: info Loaded hl7.fhir.us.core.v311#3.1.1 with 0 resources (00:00.001 / 00:10.823, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.sdc#3.0.0 from https://packages.fhir.org/hl7.fhir.uv.sdc/3.0.0 (00:00.000 / 00:10.823, 113Mb) Sushi: info Downloaded hl7.fhir.uv.sdc#3.0.0 (00:01.101 / 00:11.925, 113Mb) Sushi: info Cached hl7.fhir.uv.sdc#3.0.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.sdc#3.0.0 (00:00.001 / 00:11.926, 113Mb) Sushi: info Loaded hl7.fhir.uv.sdc#3.0.0 with 105 resources (00:00.080 / 00:12.007, 113Mb) Sushi: info Attempting to download hl7.fhir.uv.subscriptions-backport.r4#1.1.0 from https://packages.fhir.org/hl7.fhir.uv.subscriptions-backport.r4/1.1.0 (00:00.000 / 00:12.007, 113Mb) Sushi: info Downloaded hl7.fhir.uv.subscriptions-backport.r4#1.1.0 (00:00.656 / 00:12.664, 113Mb) Sushi: info Cached hl7.fhir.uv.subscriptions-backport.r4#1.1.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.subscriptions-backport.r4#1.1.0 (00:00.000 / 00:12.665, 113Mb) Sushi: info Loaded hl7.fhir.uv.subscriptions-backport.r4#1.1.0 with 23 resources (00:00.014 / 00:12.680, 113Mb) Sushi: info Attempting to download hl7.terminology.r4#7.0.0 from https://packages.fhir.org/hl7.terminology.r4/7.0.0 (00:00.000 / 00:12.680, 113Mb) Sushi: info Downloaded hl7.terminology.r4#7.0.0 (00:02.745 / 00:15.426, 113Mb) Sushi: info Cached hl7.terminology.r4#7.0.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#7.0.0 (00:00.004 / 00:15.430, 113Mb) Sushi: info Loaded hl7.terminology.r4#7.0.0 with 4096 resources (00:01.701 / 00:17.131, 113Mb) Sushi: info Attempting to download hl7.fhir.us.davinci-hrex#1.1.0 from https://packages.fhir.org/hl7.fhir.us.davinci-hrex/1.1.0 (00:00.001 / 00:17.132, 113Mb) Sushi: info Downloaded hl7.fhir.us.davinci-hrex#1.1.0 (00:00.898 / 00:18.031, 113Mb) Sushi: info Cached hl7.fhir.us.davinci-hrex#1.1.0 to /home/fhiruser/.fhir/packages/hl7.fhir.us.davinci-hrex#1.1.0 (00:00.001 / 00:18.033, 113Mb) Sushi: info Loaded hl7.fhir.us.davinci-hrex#1.1.0 with 31 resources (00:00.024 / 00:18.057, 113Mb) Sushi: info Attempting to download us.nlm.vsac#0.24.0 from https://packages.fhir.org/us.nlm.vsac/0.24.0 (00:00.000 / 00:18.058, 113Mb) Sushi: info Attempting to download us.nlm.vsac#0.24.0 from https://packages2.fhir.org/packages/us.nlm.vsac/0.24.0 (00:00.436 / 00:18.494, 113Mb) Sushi: info Downloaded us.nlm.vsac#0.24.0 (00:12.345 / 00:30.839, 113Mb) Sushi: info Cached us.nlm.vsac#0.24.0 to /home/fhiruser/.fhir/packages/us.nlm.vsac#0.24.0 (00:00.002 / 00:30.841, 113Mb) Sushi: info Loaded us.nlm.vsac#0.24.0 with 7882 resources (00:06.951 / 00:37.793, 113Mb) Sushi: warn Incorrect package version: hl7.fhir.extensions.r5#5.2.0. FHIR extensions packages should use the same version as the implementation guide's fhirVersion. Version 4.0.1 will be used instead. Update the dependency version in sushi-config.yaml to eliminate this warning. (00:00.006 / 00:37.799, 113Mb) Sushi: info Loading supplemental version of FHIR to support extensions from hl7.fhir.extensions.r5 (00:00.000 / 00:37.800, 113Mb) Sushi: info Attempting to download hl7.fhir.r5.core#5.0.0 from https://packages.fhir.org/hl7.fhir.r5.core/5.0.0 (00:00.016 / 00:37.817, 113Mb) Sushi: info Downloaded hl7.fhir.r5.core#5.0.0 (00:04.047 / 00:41.864, 113Mb) Sushi: info Cached hl7.fhir.r5.core#5.0.0 to /home/fhiruser/.fhir/packages/hl7.fhir.r5.core#5.0.0 (00:00.001 / 00:41.865, 113Mb) Sushi: info Loaded hl7.fhir.r5.core#5.0.0 with 2968 resources (00:01.383 / 00:43.249, 113Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:43.250, 113Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.062 / 00:46.313, 113Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:46.314, 113Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.443 / 00:47.758, 113Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 2 resources (00:00.168 / 00:47.926, 113Mb) Sushi: info Converting FSH to FHIR resources... (00:00.035 / 00:47.962, 113Mb) Sushi: warn Definition of extension (http://hl7.org/fhir/5.0/StructureDefinition/extension-Observation.subject) is incomplete since the following type has no equivalent in FHIR 4.0.1: http://hl7.org/fhir/StructureDefinition/NutritionProduct. (00:06.565 / 00:54.527, 113Mb) Sushi: warn Definition of extension (http://hl7.org/fhir/5.0/StructureDefinition/extension-Observation.subject) is incomplete since the following type has no equivalent in FHIR 4.0.1: http://hl7.org/fhir/StructureDefinition/NutritionProduct. (00:00.029 / 00:54.556, 113Mb) Sushi: warn Definition of extension (http://hl7.org/fhir/5.0/StructureDefinition/extension-Observation.subject) is incomplete since the following type has no equivalent in FHIR 4.0.1: http://hl7.org/fhir/StructureDefinition/NutritionProduct. (00:05.769 / 01:00.326, 113Mb) Sushi: warn Definition of extension (http://hl7.org/fhir/5.0/StructureDefinition/extension-Observation.subject) is incomplete since the following type has no equivalent in FHIR 4.0.1: http://hl7.org/fhir/StructureDefinition/NutritionProduct. (00:00.027 / 01:00.353, 113Mb) Sushi: info Converted 25 FHIR StructureDefinitions. (00:06.029 / 01:06.383, 113Mb) Sushi: info Converted 1 FHIR CodeSystems. (00:00.056 / 01:06.440, 113Mb) Sushi: info Converted 19 FHIR ValueSets. (00:00.703 / 01:07.143, 113Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:23.773 / 01:30.917, 113Mb) Sushi: File: /scratch/repo/input/fsh/instances/SDOHCC-TaskContextRichReferralWIC.fsh (00:00.000 / 01:30.917, 113Mb) Sushi: Line: 77 (00:00.000 / 01:30.917, 113Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.226 / 01:31.144, 113Mb) Sushi: File: /scratch/repo/input/fsh/instances/SDOHCC-TaskContextRichReferralWIC.fsh (00:00.000 / 01:31.144, 113Mb) Sushi: Line: 112 (00:00.000 / 01:31.145, 113Mb) Sushi: warn Sliced element Observation.category is being accessed via numeric index. Use slice names in rule paths when possible. (00:00.112 / 01:31.258, 113Mb) Sushi: File: /scratch/repo/input/fsh/instances/SDOHCC-TaskContextRichReferralWIC.fsh (00:00.000 / 01:31.258, 113Mb) Sushi: Line: 128 (00:00.000 / 01:31.258, 113Mb) Sushi: info Converted 78 FHIR instances. (00:01.805 / 01:33.064, 113Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.001 / 01:33.065, 113Mb) Sushi: info Exported 123 FHIR resources as JSON. (00:00.368 / 01:33.434, 113Mb) Sushi: info Assembling Implementation Guide sources... (00:00.004 / 01:33.438, 113Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.us.sdoh-clinicalcare.json (00:00.061 / 01:33.500, 113Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 01:33.500, 113Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.002 / 01:33.503, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:33.503, 113Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 01:33.503, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:33.504, 113Mb) Sushi: | | 22 | 3 | 0 | 0 | | (00:00.000 / 01:33.504, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:33.504, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:33.504, 113Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 01:33.504, 113Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 01:33.505, 113Mb) Sushi: | | 19 | 1 | 78 | | (00:00.000 / 01:33.505, 113Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 01:33.505, 113Mb) Sushi: | | (00:00.000 / 01:33.505, 113Mb) Sushi: =================================================================== (00:00.000 / 01:33.505, 113Mb) Sushi: | Whale, whale, what happened here? 0 Errors 8 Warnings | (00:00.000 / 01:33.505, 113Mb) Sushi: =================================================================== (00:00.000 / 01:33.506, 113Mb) Root directory: /scratch/repo (00:00.043 / 01:33.549, 113Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.809 / 01:34.358, 38Mb) Load Template from hl7.gravity.template#current (00:00.743 / 01:35.101, 94Mb) Installing hl7.gravity.template#current to the package cache  Fetching:  Installing hl7.gravity.template#current  done.  Load Template from hl7.fhir.template#current (00:01.486 / 01:36.588, 103Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:00.120 / 01:36.709, 103Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir2.base.template#current (00:00.096 / 01:36.806, 103Mb) Installing fhir2.base.template#current to the package cache  Fetching:  Installing fhir2.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:04.511 / 01:41.318, 351Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.010 / 01:41.328, 351Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-14305089751140272976.html Connect to Terminology Server at http://tx.fhir.org (00:30.152 / 02:11.481, 444Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.terminology.r4#5.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.5.0  done. Load Package hl7.terminology.r4#5.5.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Installing us.nlm.vsac#0.18.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.18.0  done. Load Package us.nlm.vsac#0.18.0 Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:25.767 / 02:37.249, 416Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Installing us.cdc.phinvads#0.12.0 to the package cache  Fetching:  Installing us.cdc.phinvads#0.12.0  done. Load Package us.cdc.phinvads#0.12.0 Installing hl7.fhir.uv.extensions.r4#5.1.0-snapshot1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.1.0  done. Load Package hl7.fhir.uv.extensions.r4#5.1.0 Load Package hl7.fhir.us.core#7.0.0 Installing hl7.fhir.us.core#6.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#6.1.0  done. Installing hl7.terminology.r4#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.0.0  done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#2.0.0  done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.1.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.1.0 Installing us.nlm.vsac#0.11.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.11.0  done. Load Package us.nlm.vsac#0.11.0 Installing ihe.formatcode.fhir#1.1.0 to the package cache  Fetching:  Installing ihe.formatcode.fhir#1.1.0  done. Load Package ihe.formatcode.fhir#1.1.0 Load Package hl7.fhir.us.core#6.1.0 Load Package hl7.fhir.us.core.v610#6.1.0 Installing hl7.fhir.us.core#3.1.1 to the package cache  Fetching:  Installing hl7.fhir.us.core#3.1.1  done. Load Package hl7.fhir.us.core#3.1.1 Load Package hl7.fhir.us.core.v311#3.1.1 Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (01:03.071 / 03:40.321, 1Gb) Load Package hl7.fhir.uv.sdc#3.0.0 Version mismatch. This IG is version 4.0.1, while the IG 'hl7.fhir.uv.subscriptions-backport.r4' is from version 4.0.0 (will try to run anyway) (00:00.132 / 03:40.454, 1Gb) Ignore Dependency on Core FHIR hl7.fhir.r4.core#4.0.0, from package 'hl7.fhir.uv.subscriptions-backport.r4#1.1.0' (00:00.000 / 03:40.454, 1Gb) Load Package hl7.fhir.uv.subscriptions-backport.r4#1.1.0 Load Package hl7.terminology.r4#7.0.0 Installing hl7.terminology.r4#6.1.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.1.0  done. Load Package hl7.terminology.r4#6.1.0 Installing us.nlm.vsac#0.19.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.19.0  done. Load Package us.nlm.vsac#0.19.0 Load Package hl7.fhir.us.davinci-hrex#1.1.0 Load Package us.nlm.vsac#0.24.0 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Initialization complete (00:46.178 / 04:26.633, 835Mb) Load IG (00:00.000 / 04:26.633, 835Mb) Load Translations (00:00.007 / 04:26.641, 835Mb) Load Content (00:00.000 / 04:26.641, 835Mb) Using en as the default narrative language. (Implementation Guide param i18n-default-lang) (00:00.302 / 04:26.944, 859Mb) Process Loaded Resources (00:04.532 / 04:31.476, 1Gb) Generating Snapshots (00:01.656 / 04:33.133, 1Gb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/sdoh-clinicalcare/package-list.json for version check (00:04.387 / 04:37.520, 1Gb) Checking Language (00:00.142 / 04:37.663, 1Gb) Load Dependency Info (00:00.005 / 04:37.669, 1Gb) Load Info (00:00.001 / 04:37.671, 1Gb) Load Paths (00:00.000 / 04:37.671, 1Gb) Check R4 / R4B (00:00.000 / 04:37.672, 1Gb) Assign Comparison Ids (00:00.150 / 04:37.823, 1Gb) Propagating status (00:00.000 / 04:37.823, 1Gb) Generating Narratives (00:00.139 / 04:37.962, 1Gb) Validating Conformance Resources (00:06.214 / 04:44.177, 1Gb) Check profiles & code systems (01:32.709 / 06:16.886, 1Gb) Check realm rules (00:00.006 / 06:16.893, 1Gb) Installing hl7.fhir.us.core#9.0.0-ballot to the package cache  Fetching:  Installing hl7.fhir.us.core#9.0.0-ballot  done. US Core Comparisons Finished Previous Version Comparison (00:08.980 / 06:25.873, 2Gb) Installing hl7.fhir.us.sdoh-clinicalcare#2.3.0 to the package cache  Fetching:  Installing hl7.fhir.us.sdoh-clinicalcare#2.3.0  done. Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Installing hl7.fhir.uv.extensions#5.1.0-snapshot1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions#5.1.0-snapshot1  done. FHIR Version mismatch in package hl7.fhir.uv.extensions#5.1.0-snapshot1: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.us.sdoh-clinicalcare#2.3.0 -> hl7.fhir.us.core#7.0.0) Installing hl7.terminology.r5#5.3.0 to the package cache  Fetching:  Installing hl7.terminology.r5#5.3.0  done. FHIR Version mismatch in package hl7.terminology.r5#5.3.0: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.us.sdoh-clinicalcare#2.3.0 -> hl7.fhir.us.core#7.0.0 -> hl7.fhir.uv.extensions#5.1.0-snapshot1) FHIR Version mismatch in package hl7.fhir.uv.subscriptions-backport.r4#1.1.0: version is 4.0.0 but must be 4.0.1 (path: hl7.fhir.us.sdoh-clinicalcare#2.3.0) Installing hl7.terminology.r4#6.2.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.2.0  done. Installing us.nlm.vsac#0.21.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.21.0  done. Checking for Bundles to sign (01:46.161 / 08:12.034, 3Gb) Validating Resources (00:00.000 / 08:12.035, 3Gb) Processing Provenance Records (00:10.547 / 08:22.583, 3Gb) Generating Translation artifacts (00:00.000 / 08:22.583, 3Gb) Generating Outputs in /scratch/repo/output (00:00.002 / 08:22.585, 3Gb) Generate Native Outputs (00:00.391 / 08:22.977, 3Gb) Run Template (00:20.909 / 08:43.887, 4Gb) Generate HTML Outputs (00:02.876 / 08:46.763, 4Gb) Generate Spreadsheets (00:54.036 / 09:40.800, 4Gb) Generate Summaries (00:07.594 / 09:48.394, 6Gb) Generating Summary Outputs (en) (00:00.000 / 09:48.394, 6Gb) Unable to find 3-character code having same country code as ISO 2-char code AA - User-assigned (00:30.955 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QM - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QN - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QO - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QP - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QQ - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QR - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QS - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QT - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QU - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QV - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QW - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QX - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QY - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code QZ - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XA - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XB - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XC - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XD - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XE - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XF - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XG - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XH - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XI - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XJ - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XK - Kosovo (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XL - User-assigned (00:00.000 / 10:19.350, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XM - User-assigned (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XN - User-assigned (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XO - User-assigned (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XP - User-assigned (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XQ - User-assigned (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XR - User-assigned (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XS - User-assigned (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XT - User-assigned (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XU - User-assigned (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XV - User-assigned (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XW - User-assigned (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XX - Unknown (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XY - User-assigned (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code XZ - International Waters (00:00.000 / 10:19.351, 3Gb) Unable to find 3-character code having same country code as ISO 2-char code ZZ - Unknown or Invalid Territory (00:00.000 / 10:19.351, 3Gb) DB Cumulative Time invested: 00:00:03.268 Sending Usage Stats to Server (00:00.423 / 10:19.775, 3Gb) ## Memory (MB): Use = 3384, Free = 15623, Total = 19008, Max = 19008 (00:00.011 / 10:19.787, 3Gb) Reclaiming memory... (00:00.000 / 10:19.787, 3Gb) ## Memory (MB): Use = 2638, Free = 16369, Total = 19008, Max = 19008 (00:02.818 / 10:22.605, 2Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 10:22.607, 2Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 10:22.607, 2Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 10:22.607, 2Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 10:22.607, 2Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.507 / 10:23.114, 2Gb) Jekyll: Generating... (00:00.000 / 10:23.114, 2Gb) Jekyll: [33m Conflict: The following destination is shared by multiple files. (00:07.794 / 10:30.909, 2Gb) Jekyll: [33m The written file may end up with unexpected contents. (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m /scratch/repo/output/FunctionalUseCaseFlowDirectReferral3.svg (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m - /scratch/repo/temp/pages/FunctionalUseCaseFlowDirectReferral3..svg (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m - /scratch/repo/temp/pages/FunctionalUseCaseFlowDirectReferral3.svg (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m  (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m Conflict: The following destination is shared by multiple files. (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m The written file may end up with unexpected contents. (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m /scratch/repo/output/PatientQuestionnaire.svg (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m - /scratch/repo/temp/pages/PatientQuestionnaire..svg (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m - /scratch/repo/temp/pages/PatientQuestionnaire.svg (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m  (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m Conflict: The following destination is shared by multiple files. (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m The written file may end up with unexpected contents. (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m /scratch/repo/output/en/FunctionalUseCaseFlowDirectReferral3.svg (00:00.000 / 10:30.909, 2Gb) Jekyll: [33m - /scratch/repo/temp/pages/en/FunctionalUseCaseFlowDirectReferral3..svg (00:00.000 / 10:30.910, 2Gb) Jekyll: [33m - /scratch/repo/temp/pages/en/FunctionalUseCaseFlowDirectReferral3.svg (00:00.000 / 10:30.910, 2Gb) Jekyll: [33m  (00:00.000 / 10:30.910, 2Gb) Jekyll: [33m Conflict: The following destination is shared by multiple files. (00:00.000 / 10:30.910, 2Gb) Jekyll: [33m The written file may end up with unexpected contents. (00:00.000 / 10:30.910, 2Gb) Jekyll: [33m /scratch/repo/output/en/PatientQuestionnaire.svg (00:00.000 / 10:30.910, 2Gb) Jekyll: [33m - /scratch/repo/temp/pages/en/PatientQuestionnaire..svg (00:00.000 / 10:30.910, 2Gb) Jekyll: [33m - /scratch/repo/temp/pages/en/PatientQuestionnaire.svg (00:00.000 / 10:30.910, 2Gb) Jekyll: [33m  (00:00.000 / 10:30.910, 2Gb) Jekyll: done in 8.378 seconds. (00:00.581 / 10:31.492, 2Gb) Checking Output HTML (00:06.742 / 10:38.234, 3Gb) AI format for /scratch/repo/output/en - % reduction = 99 found 3960 files (00:04.029 / 10:42.264, 6Gb) ....................................... ....................................... ... 3960 html files, 0 pages invalid xhtml (0%) (01:13.864 / 11:56.129, 4Gb) ... 531837 links, 0 broken links (0%) (00:00.000 / 11:56.129, 4Gb) Generate fragment-usage-analysis.csv (00:00.000 / 11:56.129, 4Gb) Build final .zip (00:00.009 / 11:56.139, 4Gb) Final .zip built (00:08.332 / 12:04.471, 4Gb) Built. Times: loading: 00:11.022, generate: 07:34.467, propagating status: 00:00.138, narrative generation: 00:06.213, realm-rules: 00:08.980, previous-version: 01:46.107, jekyll: 00:08.925, validation: 01:43.137 (#126), template: 00:02.778 (#3) (00:07.659 / 12:12.131, 5Gb) Generating QA (00:00.000 / 12:12.131, 5Gb) Validation output in /scratch/repo/output/qa.html Errors: 1, Warnings: 0, Info: 0, Broken Links: 0 (00:00.670 / 12:12.801, 5Gb) Finished @ 12/12/25, 4:27 PM. Max Memory Used = 6Gb (00:00.085 / 12:12.887, 5Gb)