INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/fhir-radiation-dose-summary-ig --branch main repo DEBUG:root:Time to deadline 35879.998027 seconds Cloning into 'repo'... DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35879.530546 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35878.060073 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported added 139 packages in 9s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.2 npm notice Changelog: npm notice Run `npm install -g npm@11.6.2` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-radiation-dose-summary-ig/ -out /scratch/repo DEBUG:root:Time to deadline 35868.653303 seconds FHIR IG Publisher Version 2.0.24 (Git# f67b3ab6b4f9). Built 2025-10-28T17:45:50.25Z (23 hours old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-radiation-dose-summary-ig/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Wednesday, October 29, 2025, 5:37:07 PM Coordinated Universal Time (2025-10-29T17:37:07Z) Build FHIR IG from /scratch/repo (00:00.034 / 00:00.035, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.003 / 00:00.038, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.004 / 00:00.042, 97Mb) Found dependency on hl7.fhir.uv.ips#2.0.0 in Sushi config. Pre-installing (00:00.005 / 00:00.047, 97Mb) Installing hl7.fhir.uv.ips#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.ips#2.0.0  done. Found dependency on fhir.dicom#2025.2.20250411 in Sushi config. Pre-installing (00:02.010 / 00:02.058, 64Mb) Installing fhir.dicom#2025.2.20250411 to the package cache  Fetching:  Installing fhir.dicom#2025.2.20250411  done. Run Sushi on /scratch/repo (00:10.025 / 00:12.083, 160Mb) Sushi: info Running SUSHI v3.16.5 (implements FHIR Shorthand specification v3.0.0) (00:00.754 / 00:12.838, 168Mb) Sushi: info Arguments: (00:00.000 / 00:12.838, 168Mb) Sushi: info --require-latest (00:00.000 / 00:12.839, 168Mb) Sushi: info --out /scratch/repo (00:00.000 / 00:12.839, 168Mb) Sushi: info /scratch/repo (00:00.000 / 00:12.840, 168Mb) Sushi: info Using configuration file: /scratch/repo/sushi-config.yaml (00:01.039 / 00:13.879, 168Mb) Sushi: info Importing FSH text... (00:00.124 / 00:14.004, 168Mb) Sushi: info Preprocessed 13 documents with 6 aliases. (00:00.342 / 00:14.346, 168Mb) Sushi: info Imported 9 definitions and 18 instances. (00:00.032 / 00:14.379, 168Mb) Sushi: info Loaded virtual package sushi-r5forR4#1.0.0 with 7 resources (00:00.172 / 00:14.551, 168Mb) Sushi: info Resolved hl7.fhir.uv.tools.r4#latest to concrete version 0.8.0 (00:00.620 / 00:15.172, 168Mb) Sushi: info Attempting to download hl7.fhir.uv.tools.r4#0.8.0 from https://packages.fhir.org/hl7.fhir.uv.tools.r4/0.8.0 (00:00.001 / 00:15.173, 168Mb) Sushi: info Downloaded hl7.fhir.uv.tools.r4#0.8.0 (00:00.813 / 00:15.986, 168Mb) Sushi: info Cached hl7.fhir.uv.tools.r4#0.8.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.tools.r4#0.8.0 (00:00.003 / 00:15.989, 168Mb) Sushi: info Loaded hl7.fhir.uv.tools.r4#0.8.0 with 110 resources (00:00.060 / 00:16.050, 168Mb) Sushi: info Resolved hl7.terminology.r4#latest to concrete version 6.5.0 (00:00.467 / 00:16.517, 168Mb) Sushi: info Attempting to download hl7.terminology.r4#6.5.0 from https://packages.fhir.org/hl7.terminology.r4/6.5.0 (00:00.000 / 00:16.518, 168Mb) Sushi: info Downloaded hl7.terminology.r4#6.5.0 (00:03.379 / 00:19.897, 168Mb) Sushi: info Cached hl7.terminology.r4#6.5.0 to /home/fhiruser/.fhir/packages/hl7.terminology.r4#6.5.0 (00:00.002 / 00:19.900, 168Mb) Sushi: info Loaded hl7.terminology.r4#6.5.0 with 4392 resources (00:01.594 / 00:21.494, 168Mb) Sushi: info Resolved hl7.fhir.uv.extensions.r4#latest to concrete version 5.2.0 (00:00.442 / 00:21.937, 168Mb) Sushi: info Attempting to download hl7.fhir.uv.extensions.r4#5.2.0 from https://packages.fhir.org/hl7.fhir.uv.extensions.r4/5.2.0 (00:00.000 / 00:21.937, 168Mb) Sushi: info Downloaded hl7.fhir.uv.extensions.r4#5.2.0 (00:01.464 / 00:23.402, 168Mb) Sushi: info Cached hl7.fhir.uv.extensions.r4#5.2.0 to /home/fhiruser/.fhir/packages/hl7.fhir.uv.extensions.r4#5.2.0 (00:00.001 / 00:23.403, 168Mb) Sushi: info Loaded hl7.fhir.uv.extensions.r4#5.2.0 with 759 resources (00:00.241 / 00:23.645, 168Mb) Sushi: info Loaded hl7.fhir.uv.ips#2.0.0 with 74 resources (00:00.088 / 00:23.733, 168Mb) Sushi: info Loaded fhir.dicom#2025.2.20250411 with 1398 resources (00:00.370 / 00:24.104, 168Mb) Sushi: info Attempting to download hl7.fhir.r4.core#4.0.1 from https://packages.fhir.org/hl7.fhir.r4.core/4.0.1 (00:00.000 / 00:24.104, 168Mb) Sushi: info Downloaded hl7.fhir.r4.core#4.0.1 (00:03.665 / 00:27.770, 168Mb) Sushi: info Cached hl7.fhir.r4.core#4.0.1 to /home/fhiruser/.fhir/packages/hl7.fhir.r4.core#4.0.1 (00:00.001 / 00:27.771, 168Mb) Sushi: info Loaded hl7.fhir.r4.core#4.0.1 with 4581 resources (00:01.334 / 00:29.106, 168Mb) Sushi: info Loaded virtual package sushi-local#LOCAL with 4 resources (00:00.039 / 00:29.146, 168Mb) Sushi: info Converting FSH to FHIR resources... (00:00.022 / 00:29.168, 168Mb) Sushi: info Converted 4 FHIR StructureDefinitions. (00:01.126 / 00:30.295, 168Mb) Sushi: info Converted 1 FHIR CodeSystems. (00:00.029 / 00:30.324, 168Mb) Sushi: info Converted 4 FHIR ValueSets. (00:00.224 / 00:30.549, 168Mb) Sushi: info Converted 18 FHIR instances. (00:02.367 / 00:32.917, 168Mb) Sushi: info Exporting FHIR resources as JSON... (00:00.019 / 00:32.936, 168Mb) Sushi: info Exported 27 FHIR resources as JSON. (00:00.067 / 00:33.003, 168Mb) Sushi: info Assembling Implementation Guide sources... (00:00.002 / 00:33.005, 168Mb) Sushi: info Generated ImplementationGuide-hl7.fhir.uv.radiation-dose-summary.json (00:00.048 / 00:33.054, 168Mb) Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:00.000 / 00:33.054, 168Mb) Sushi: ========================= SUSHI RESULTS =========================== (00:00.001 / 00:33.056, 168Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:33.056, 168Mb) Sushi: | | Profiles | Extensions | Logicals | Resources | | (00:00.000 / 00:33.056, 168Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:33.056, 168Mb) Sushi: | | 4 | 0 | 0 | 0 | | (00:00.000 / 00:33.057, 168Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:33.057, 168Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:33.057, 168Mb) Sushi: | | ValueSets | CodeSystems | Instances | | (00:00.000 / 00:33.057, 168Mb) Sushi: | |-------------------------------------------------------------| | (00:00.000 / 00:33.057, 168Mb) Sushi: | | 4 | 1 | 18 | | (00:00.000 / 00:33.057, 168Mb) Sushi: | ------------------------------------------------------------- | (00:00.000 / 00:33.058, 168Mb) Sushi: | | (00:00.000 / 00:33.058, 168Mb) Sushi: =================================================================== (00:00.000 / 00:33.058, 168Mb) Sushi: | You've found your sea legs. 0 Errors 0 Warnings | (00:00.000 / 00:33.058, 168Mb) Sushi: =================================================================== (00:00.000 / 00:33.058, 168Mb) Root directory: /scratch/repo (00:00.032 / 00:33.091, 168Mb) Unable to load IG as an r5 IG - try R4 (property code is a class com.google.gson.JsonPrimitive looking for an object) (00:00.646 / 00:33.737, 56Mb) Load Template from hl7.fhir.template#current (00:00.618 / 00:34.355, 57Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:00.624 / 00:34.979, 97Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir2.base.template#current (00:00.208 / 00:35.188, 97Mb) Installing fhir2.base.template#current to the package cache  Fetching:  Installing fhir2.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:03.898 / 00:39.087, 393Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.000 / 00:39.088, 393Mb) Running Terminology Log: /tmp/ohfu-fhir-ig-3103001065416828340.html Connect to Terminology Server at http://tx.fhir.org (00:41.296 / 01:20.385, 496Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Load Package hl7.terminology.r4#6.5.0 Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.fhir.uv.ipa#1.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.ipa#1.1.0  done. Installing hl7.terminology.r4#6.2.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.2.0  done. Load Package hl7.terminology.r4#6.2.0 Installing hl7.fhir.uv.smart-app-launch#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.0.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.0.0 Load Package hl7.fhir.uv.ipa#1.1.0 Load Package hl7.fhir.uv.ips#2.0.0 Load Package fhir.dicom#2025.2.20250411 Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:14.509 / 01:34.894, 418Mb) Load IG (00:00.000 / 01:34.894, 418Mb) Load Translations (00:00.003 / 01:34.898, 418Mb) Load Content (00:00.000 / 01:34.898, 418Mb) Using en as the default narrative language. (Implementation Guide param i18n-default-lang) (00:00.077 / 01:34.976, 418Mb) Process Loaded Resources (00:00.970 / 01:35.946, 474Mb) Generating Snapshots (00:00.257 / 01:36.204, 514Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/uv/radiation-dose-summary/package-list.json for version check (00:00.797 / 01:37.001, 690Mb) Checking Language (00:00.139 / 01:37.141, 690Mb) Load Dependency Info (00:00.002 / 01:37.143, 690Mb) Load Info (00:00.001 / 01:37.145, 690Mb) Load Paths (00:00.001 / 01:37.146, 695Mb) Check R4 / R4B (00:00.000 / 01:37.146, 695Mb) Assign Comparison Ids (00:00.032 / 01:37.179, 703Mb) Propagating status (00:00.000 / 01:37.180, 703Mb) Generating Narratives (00:00.042 / 01:37.222, 722Mb) Validating Conformance Resources (00:03.452 / 01:40.675, 695Mb) Check profiles & code systems (00:09.620 / 01:50.295, 564Mb) Check realm rules (00:00.002 / 01:50.297, 564Mb) Previous Version Comparison (00:00.000 / 01:50.298, 564Mb) Installing hl7.fhir.uv.radiation-dose-summary#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.radiation-dose-summary#0.1.0  done. Installing hl7.fhir.uv.ips#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.ips#1.0.0  done. Installing fhir.dicom#2021.4.20210910 to the package cache  Fetching:  Installing fhir.dicom#2021.4.20210910  done. Checking for Bundles to sign (00:16.246 / 02:06.544, 797Mb) Validating Resources (00:00.000 / 02:06.545, 797Mb) Processing Provenance Records (00:03.608 / 02:10.154, 965Mb) Generating Translation artifacts (00:00.000 / 02:10.154, 965Mb) Generating Outputs in /scratch/repo/output (00:00.001 / 02:10.155, 965Mb) Generate Native Outputs (00:00.410 / 02:10.566, 982Mb) Run Template (00:02.841 / 02:13.408, 963Mb) Generate HTML Outputs (00:05.133 / 02:18.542, 681Mb) Generate Spreadsheets (00:19.884 / 02:38.427, 1Gb) Generate Summaries (00:05.114 / 02:43.541, 2Gb) Generating Summary Outputs (en) (00:00.000 / 02:43.542, 2Gb) DB Cumulative Time invested: 00:00:00.763 Sending Usage Stats to Server (00:15.619 / 02:59.162, 4Gb) ## Memory (MB): Use = 4514, Free = 14493, Total = 19008, Max = 19008 (00:00.010 / 02:59.172, 4Gb) Reclaiming memory... (00:00.000 / 02:59.172, 4Gb) ## Memory (MB): Use = 625, Free = 18382, Total = 19008, Max = 19008 (00:00.697 / 02:59.870, 641Mb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.001 / 02:59.872, 641Mb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 02:59.872, 641Mb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 02:59.872, 641Mb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 02:59.872, 641Mb) Jekyll: Source: /scratch/repo/temp/pages (00:00.575 / 03:00.448, 657Mb) Jekyll: Generating... (00:00.000 / 03:00.448, 657Mb) Jekyll: done in 2.95 seconds. (00:02.949 / 03:03.398, 658Mb) Checking Output HTML (00:01.604 / 03:05.002, 1Gb) AI format for /scratch/repo/output/en - % reduction = 99 found 1817 files (00:00.697 / 03:05.700, 1Gb) ........................................ ........................................ ... 1817 html files, 0 pages invalid xhtml (0%) (00:15.339 / 03:21.039, 5Gb) ... 102264 links, 0 broken links (0%) (00:00.000 / 03:21.039, 5Gb) Generate fragment-usage-analysis.csv (00:00.000 / 03:21.039, 5Gb) Build final .zip (00:00.008 / 03:21.048, 5Gb) Final .zip built (00:01.818 / 03:22.867, 5Gb) Built. Times: loading: 00:02.243, generate: 01:48.284, propagating status: 00:00.042, narrative generation: 00:03.452, realm-rules: 00:00.000, previous-version: 00:16.198, jekyll: 00:03.549, validation: 00:13.225 (#32), template: 00:05.145 (#3) (00:02.558 / 03:25.426, 6Gb) Generating QA (00:00.000 / 03:25.426, 6Gb) Validation output in /scratch/repo/output/qa.html Errors: 1, Warnings: 0, Info: 0, Broken Links: 0 (00:00.183 / 03:25.609, 6Gb) Finished @ 10/29/25, 5:40 PM. Max Memory Used = 6Gb (00:00.023 / 03:25.633, 6Gb)