INFO:root:about to clone! DEBUG:root:running: git clone --recursive https://github.com/HL7/fhir-qi-core --branch v6.0.0-ballot repo DEBUG:root:Time to deadline 35879.998023 seconds Cloning into 'repo'... Note: switching to '25c5356ee9805265021bc393ca161dfd7b00a89b'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false DEBUG:root:running: wget -q https://github.com/HL7/fhir-ig-publisher/releases/latest/download/publisher.jar -O publisher.jar DEBUG:root:Time to deadline 35866.642162 seconds DEBUG:root:running: npm -g install fsh-sushi DEBUG:root:Time to deadline 35865.523341 seconds npm WARN deprecated inflight@1.0.6: This module is not supported, and leaks memory. Do not use it. Check out lru-cache if you want a good and tested way to coalesce async requests by a key value, which is much more comprehensive and powerful. npm WARN deprecated glob@7.2.3: Glob versions prior to v9 are no longer supported npm WARN deprecated rimraf@2.6.3: Rimraf versions prior to v4 are no longer supported added 139 packages in 6s 14 packages are looking for funding run `npm fund` for details npm notice npm notice New major version of npm available! 9.8.1 -> 11.6.4 npm notice Changelog: npm notice Run `npm install -g npm@11.6.4` to update! npm notice DEBUG:root:running: java -Xms19000m -Xmx19000m -jar ../publisher.jar -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-qi-core/ -out /scratch/repo DEBUG:root:Time to deadline 35859.379443 seconds FHIR IG Publisher Version 2.0.27 (Git# 07050daf807f). Built 2025-11-28T20:03:59.255Z (3 days old) Detected Java version: 21-ea from /usr/local/openjdk-21 on Linux/amd64 (64bit). 19008MB available dir = /scratch/repo, path = /usr/local/openjdk-21/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Parameters: -ig ig.json -api-key-file /etc/ig.builder.keyfile.ini -fhir-settings /etc/fhir-settings.json -auto-ig-build -tx http://tx.fhir.org -target https://build.fhir.org/ig/HL7/fhir-qi-core/ -out /scratch/repo Character encoding = UTF-8 / UTF-8 Start Clock @ Tuesday, December 2, 2025, 2:24:06 PM Coordinated Universal Time (2025-12-02T14:24:06Z) Build FHIR IG from /scratch/repo (00:00.021 / 00:00.021, 97Mb) API keys loaded from /etc/fhir-settings.json (00:00.002 / 00:00.024, 97Mb) Package Cache: /var/lib/.fhir/packages (00:00.002 / 00:00.026, 97Mb) Root directory: /scratch/repo (00:00.009 / 00:00.036, 97Mb) Load Template from hl7.fhir.template#current (00:00.960 / 00:00.997, 77Mb) Installing hl7.fhir.template#current to the package cache  Fetching:  Installing hl7.fhir.template#current  done.  Load Template from hl7.base.template#current (00:01.095 / 00:02.092, 150Mb) Installing hl7.base.template#current to the package cache  Fetching:  Installing hl7.base.template#current  done.  Load Template from fhir2.base.template#current (00:00.157 / 00:02.250, 150Mb) Installing fhir2.base.template#current to the package cache  Fetching:  Installing fhir2.base.template#current  done. Scanning directory: /scratch/repo/template ====================================================================== Terminology Cache is at /scratch/repo/input-cache/txcache. Trimming now (00:03.346 / 00:05.597, 149Mb) Core Package hl7.fhir.r4.core#4.0.1 (00:00.008 / 00:05.605, 149Mb) Installing hl7.fhir.r4.core#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.core#4.0.1  done. Running Terminology Log: /tmp/ohfu-fhir-ig-3923800513216677531.html Connect to Terminology Server at http://tx.fhir.org (00:28.738 / 00:34.344, 607Mb) Installing hl7.fhir.pubpack#0.2.3 to the package cache  Fetching:  Installing hl7.fhir.pubpack#0.2.3  done. Load Package hl7.fhir.pubpack#0.2.3 Installing hl7.fhir.xver-extensions#0.1.0 to the package cache  Fetching:  Installing hl7.fhir.xver-extensions#0.1.0  done. Load Package hl7.fhir.xver-extensions#0.1.0 Installing hl7.terminology.r4#7.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#7.0.0  done. Load Package hl7.terminology.r4#7.0.0 Installing hl7.fhir.uv.extensions.r4#5.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#5.2.0  done. Load Package hl7.fhir.uv.extensions.r4#5.2.0 Installing hl7.fhir.us.core#6.1.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#6.1.0  done. Installing hl7.terminology.r4#5.0.0 to the package cache  Fetching:  Installing hl7.terminology.r4#5.0.0  done. Load Package hl7.terminology.r4#5.0.0 Installing hl7.fhir.uv.extensions.r4#1.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions.r4#1.0.0  done. Load Package hl7.fhir.uv.extensions.r4#1.0.0 Installing hl7.fhir.uv.bulkdata#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.bulkdata#2.0.0  done. Load Package hl7.fhir.uv.bulkdata#2.0.0 Installing hl7.fhir.uv.smart-app-launch#2.1.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.1.0  done. Load Package hl7.fhir.uv.smart-app-launch#2.1.0 Installing us.nlm.vsac#0.11.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.11.0  done. Load Package us.nlm.vsac#0.11.0 Installing hl7.fhir.uv.sdc#3.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.sdc#3.0.0  done. Ignore Dependency on Core FHIR hl7.fhir.r4.examples#4.0.1, from package 'hl7.fhir.uv.sdc#3.0.0' (00:41.734 / 01:16.078, 485Mb) Load Package hl7.fhir.uv.sdc#3.0.0 Installing us.cdc.phinvads#0.12.0 to the package cache  Fetching:  Installing us.cdc.phinvads#0.12.0  done. Load Package us.cdc.phinvads#0.12.0 Installing ihe.formatcode.fhir#1.1.0 to the package cache  Fetching:  Installing ihe.formatcode.fhir#1.1.0  done. Load Package ihe.formatcode.fhir#1.1.0 Load Package hl7.fhir.us.core#6.1.0 Installing fhir.dicom#2023.3.20230704 to the package cache  Fetching:  Installing fhir.dicom#2023.3.20230704  done. Load Package fhir.dicom#2023.3.20230704 Installing hl7.fhir.uv.tools.r4#0.8.0 to the package cache  Fetching:  Installing hl7.fhir.uv.tools.r4#0.8.0  done. Load Package hl7.fhir.uv.tools.r4#0.8.0 Load R5 Specials Installing hl7.fhir.r5.core#5.0.0 to the package cache  Fetching:  Installing hl7.fhir.r5.core#5.0.0  done. Initialization complete (00:22.364 / 01:38.443, 1Gb) Load IG (00:00.000 / 01:38.444, 1Gb) Load Translations (00:00.002 / 01:38.446, 1Gb) Load Content (00:00.000 / 01:38.447, 1Gb) Using en as the default narrative language. (Implementation Guide param i18n-default-lang) (00:00.097 / 01:38.544, 1Gb) Process Loaded Resources (00:02.784 / 01:41.329, 624Mb) Generating Snapshots (00:00.870 / 01:42.200, 764Mb) Signing Certificate: RSA key for Subject: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us from: OU=IG Publisher, L=Ann Arbor, CN=hl7.org, O=HL7, ST=Missouri, C=us Fetch http://hl7.org/fhir/us/qicore/package-list.json for version check (00:03.492 / 01:45.692, 1Gb) Checking Language (00:00.159 / 01:45.851, 1Gb) Load Dependency Info (00:00.004 / 01:45.855, 1Gb) Load Info (00:00.002 / 01:45.857, 1Gb) Load Paths (00:00.001 / 01:45.858, 1Gb) Check R4 / R4B (00:00.000 / 01:45.859, 1Gb) Assign Comparison Ids (00:00.049 / 01:45.909, 1Gb) Propagating status (00:00.000 / 01:45.909, 1Gb) Generating Narratives (00:00.000 / 01:45.909, 1Gb) Validating Conformance Resources (00:06.352 / 01:52.261, 1Gb) Check profiles & code systems (00:22.508 / 02:14.770, 1Gb) Check realm rules (00:00.008 / 02:14.778, 1Gb) Installing hl7.fhir.us.core#8.0.0 to the package cache  Fetching:  Installing hl7.fhir.us.core#8.0.0  done. US Core Comparisons Finished Previous Version Comparison (00:06.260 / 02:21.039, 3Gb) Installing hl7.fhir.us.qicore#8.0.0-ballot to the package cache  Fetching:  Installing hl7.fhir.us.qicore#8.0.0-ballot  done. Installing hl7.terminology.r4#6.4.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.4.0  done. Installing hl7.fhir.uv.smart-app-launch#2.2.0 to the package cache  Fetching:  Installing hl7.fhir.uv.smart-app-launch#2.2.0  done. Installing hl7.fhir.uv.extensions#5.1.0-snapshot1 to the package cache  Fetching:  Installing hl7.fhir.uv.extensions#5.1.0-snapshot1  done. FHIR Version mismatch in package hl7.fhir.uv.extensions#5.1.0-snapshot1: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.us.qicore#8.0.0-ballot -> hl7.fhir.us.core#8.0.0 -> hl7.fhir.uv.smart-app-launch#2.2.0) Installing hl7.terminology.r5#5.3.0 to the package cache  Fetching:  Installing hl7.terminology.r5#5.3.0  done. FHIR Version mismatch in package hl7.terminology.r5#5.3.0: version is 5.0.0 but must be 4.0.1 (path: hl7.fhir.us.qicore#8.0.0-ballot -> hl7.fhir.us.core#8.0.0 -> hl7.fhir.uv.smart-app-launch#2.2.0 -> hl7.fhir.uv.extensions#5.1.0-snapshot1) Installing hl7.terminology#5.5.0 to the package cache  Fetching:  Installing hl7.terminology#5.5.0  done. Installing us.nlm.vsac#0.23.0 to the package cache  Fetching:  Installing us.nlm.vsac#0.23.0  done. Installing hl7.fhir.r4.examples#4.0.1 to the package cache  Fetching:  Installing hl7.fhir.r4.examples#4.0.1  done. Installing fhir.dicom#2025.2.20250411 to the package cache  Fetching:  Installing fhir.dicom#2025.2.20250411  done. Installing hl7.terminology.r4#6.5.0 to the package cache  Fetching:  Installing hl7.terminology.r4#6.5.0  done. Installing hl7.fhir.uv.cql#2.0.0 to the package cache  Fetching:  Installing hl7.fhir.uv.cql#2.0.0  done. Checking for Bundles to sign (07:39.132 / 10:00.172, 3Gb) Validating Resources (00:00.000 / 10:00.172, 3Gb) Processing Provenance Records (00:14.020 / 10:14.193, 5Gb) Generating Translation artifacts (00:00.000 / 10:14.193, 5Gb) Generating Outputs in /scratch/repo/output (00:00.001 / 10:14.195, 5Gb) Generate Native Outputs (00:00.398 / 10:14.593, 5Gb) Run Template (00:15.711 / 10:30.305, 11Gb) Generate HTML Outputs (00:01.979 / 10:32.284, 11Gb) Generate Spreadsheets (00:49.528 / 11:21.813, 2Gb) Generate Summaries (00:08.184 / 11:29.997, 7Gb) Generating Summary Outputs (en) (00:00.031 / 11:30.028, 7Gb) DB Cumulative Time invested: 00:00:04.723 Sending Usage Stats to Server (00:23.298 / 11:53.326, 11Gb) ## Memory (MB): Use = 11584, Free = 7423, Total = 19008, Max = 19008 (00:00.011 / 11:53.338, 11Gb) Reclaiming memory... (00:00.000 / 11:53.338, 11Gb) ## Memory (MB): Use = 1973, Free = 17034, Total = 19008, Max = 19008 (00:01.808 / 11:55.148, 1Gb) Run jekyll: jekyll build --destination "/scratch/repo/output" (in folder /scratch/repo/temp/pages) (00:00.009 / 11:55.156, 1Gb) Troubleshooting Note: usual cases for Jekyll to fail are: (00:00.000 / 11:55.157, 1Gb) * A failure to produce a fragment that is already logged in the output above (00:00.000 / 11:55.157, 1Gb) * A reference to a manually edited file that hasn't been provided (00:00.000 / 11:55.157, 1Gb) Jekyll: Source: /scratch/repo/temp/pages (00:00.394 / 11:55.551, 1Gb) Jekyll: Generating... (00:00.000 / 11:55.551, 1Gb) Jekyll has failed. Complete output from running Jekyll:  Liquid Exception: Could not locate the included file 'dependency-table.xhtml' in any of ["/scratch/repo/temp/pages/_includes"]. Ensure it exists in one of those directories and, if it is a symlink, does not point outside your site source. in en/down (00:07.848 / 12:03.400, 1Gb) Note: Check that Jekyll is installed correctly (00:00.000 / 12:03.400, 1Gb) Publishing Content Failed: Process exited with an error: 1 (Exit value: 1) (00:00.032 / 12:03.433, 1Gb) (00:00.000 / 12:03.433, 1Gb) Use -? to get command line help (00:00.000 / 12:03.433, 1Gb) (00:00.000 / 12:03.433, 1Gb) Stack Dump (for debugging): (00:00.000 / 12:03.433, 1Gb) org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) at org.apache.commons.exec.DefaultExecutor.executeInternal(DefaultExecutor.java:404) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:166) at org.apache.commons.exec.DefaultExecutor.execute(DefaultExecutor.java:153) at org.hl7.fhir.igtools.publisher.PublisherGenerator.runJekyll(PublisherGenerator.java:3796) at org.hl7.fhir.igtools.publisher.PublisherGenerator.runTool(PublisherGenerator.java:3683) at org.hl7.fhir.igtools.publisher.PublisherGenerator.generate(PublisherGenerator.java:381) at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:427) at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:231) at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:1593)